Pregenerated sensors for EPGN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035020Ensembl transcript IDs: ENSMUST00000041516.9, ENSMUST00000202724.4
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTTCAGTCCTCAGGAATTTATCTGCTTCTTCCAAACTACATGAATaGAGTTTGCAAACTGTTGTCACCAGCTGGGTAGGATTTATGCTG | + |
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Preference number: 1 (lower is better) Translates to: LSVLRNLSASSKLHE*SLQTVVTSWVGFML Trigger: CAGCATAAATCCTACCCAGCTGGTGACAACAGTTTGCAAACTTCATTCATGTAGTTTGGAAGAAGCAGATAAATTCCTGAGGACTGAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR TCA 90 bp | GTGACTTTCAGTCCTCAGGAATTTATCTGCTTCTTCCAAACTACATaGATGAAGTTTGCAAACTGTTGTCACCAGCTGGGTAGGATTTAT | + |
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Preference number: 1 (lower is better) Translates to: VTFSPQEFICFFQTT*MKFANCCHQLGRIY Trigger: ATAAATCCTACCCAGCTGGTGACAACAGTTTGCAAACTTCATTCATGTAGTTTGGAAGAAGCAGATAAATTCCTGAGGACTGAAAGTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR TCA 90 bp | GTTAGAAACGGGGCTGAGGATGGAAGCATTGAGGATAATCTTGCCTGCCATGCACAAATCTTCCTGCAGTaGCAACAACCACCCAACAGC | + |
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Preference number: 2 (lower is better) Translates to: VRNGAEDGSIEDNLACHAQIFLQ*QQPPNS Trigger: GCTGTTGGGTGGTTGTTGTCACTGCAGGAAGATTTG...TGCATGGCAGGCAAGATTATCCTCAATGCTTCCATCCTCAGCCCCGTTTCTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR CAA 90 bp | GTGACAACAACCACCCAACAGCAAACCCAAAGAAGGGTAGTGAACTaGGCTTCTGTTACTGTAGCTCATTCCCATAGCTTCCATGGCACC | + |
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Preference number: 2 (lower is better) Translates to: VTTTTQQQTQRRVVN*ASVTVAHSHSFHGT Trigger: GGTGCCATGGAAGCTATGGGAATGAGCTACAGTAACAGAAGCCAAGTTCACTACCCTTCTTTGGGTTTGCTGTTGGGTGGTTGTTGTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR CCA 90 bp | AACGGGGCTGAGGATGGAAGCATTGAGGATAATCTTGCCTGCCATGCAGTTATACCATTGGATTCCCTGTaGCTTTTGACAAATGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: NGAEDGSIEDNLACHAVIPLDSL*LLTNGL Trigger: CAAGCCATTTGTCAAAAGCCACAGGGAATCCAATGG...TATAACTGCATGGCAGGCAAGATTATCCTCAATGCTTCCATCCTCAGCCCCGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR GCA 90 bp | ACCAGCTGGGTAGGATTTATGCTGCCTTGGATATTCCATTTTCTTTTAGTGGTTCCAATGGTCAATTACTaGATTGTGACCCAAACCACC | + |
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Preference number: 2 (lower is better) Translates to: TSWVGFMLPWIFHFLLVVPMVNY*IVTQTT Trigger: GGTGGTTTGGGTCACAATGCAGTAATTGACCATTGG...AACCACTAAAAGAAAATGGAATATCCAAGGCAGCATAAATCCTACCCAGCTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR CCA 90 bp | AATGGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTACCATTGGATTCCCTGTaGCTTTTGACAAATGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: NGQLLHCDPNHHYFQVSLPLDSL*LLTNGL Trigger: CAAGCCATTTGTCAAAAGCCACAGGGAATCCAATGG...TAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR CAA 90 bp | ATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTaGTATCATCCAAAGATCTCCATTGGATTCCCTGTGGCTTTTGAC | + |
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Preference number: 2 (lower is better) Translates to: IVTQTTIIFKLAYHI*YHPKISIGFPVAFD Trigger: GTCAAAAGCCACAGGGAATCCAATGGAGATCTTTGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR-3UTR CCA 90 bp | GGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCAGTGGCTTTTGACAAATaGCTTGATGACTATGTCTTA | + |
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Preference number: 2 (lower is better) Translates to: GQLLHCDPNHHYFQVSLSVAFDK*LDDYVL Trigger: TAAGACATAGTCATCAAGCCATTTGTCAAAAGCCAC...TGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR-3UTR CAA 90 bp | GTTAGAAACGGGGCTGAGGATGGAAGCATTGAGGATAATCTTGCCTGCCATGCAATAGGAACAGCTACTTaGCCTGCTCTGGATCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: VRNGAEDGSIEDNLACHAIGTAT*PALDLL Trigger: CAGCAGATCCAGAGCAGGCAAAGTAGCTGTTCCTAT...TGCATGGCAGGCAAGATTATCCTCAATGCTTCCATCCTCAGCCCCGTTTCTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR TCA 72 bp | ACAGCTACTTTGCCTGCTCTGGATCTGCTGTCCAGGTaGCTTTCAGTCCTCAGGAATTTATCTGCTTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: TATLPALDLLSR*LSVLRNLSASS Trigger: GGAAGAAGCAGATAAATTCCTGAGGACTGAAAGTCACCTGGACAGCAGATCCAGAGCAGGCAAAGTAGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR CAA 90 bp | GTTAGAAACGGGGCTGAGGATGGAAGCATTGAGGATAATCTTGCCTGCCATGCAGATTCCCTGTGGCTTTaGACAAATGGCTTGATGACT | + |
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Preference number: 3 (lower is better) Translates to: VRNGAEDGSIEDNLACHADSLWL*TNGLMT Trigger: AGTCATCAAGCCATTTGTCAAAAGCCACAGGGAATC...TGCATGGCAGGCAAGATTATCCTCAATGCTTCCATCCTCAGCCCCGTTTCTAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR TCA 72 bp | AGTCCTCAGGAATTTATCTGCTTCTTCCAAACTACATaGATGAAGTTTGCAAACTGTTGTCACCAGCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: SPQEFICFFQTT*MKFANCCHQLG Trigger: ACCCAGCTGGTGACAACAGTTTGCAAACTTCATTCATGTAGTTTGGAAGAAGCAGATAAATTCCTGAGGACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR CAA 90 bp | CAGCTGGGTAGGATTTATGCTGCCTTGGATATTCCATTTTCTTTTAGTGGTTTAAGAAGGGTAGTGAACTaGGCTTCTGTTACTGTAGCT | + |
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Preference number: 3 (lower is better) Translates to: QLGRIYAALDIPFSFSGLRRVVN*ASVTVA Trigger: AGCTACAGTAACAGAAGCCAAGTTCACTACCCTTCT...TAAACCACTAAAAGAAAATGGAATATCCAAGGCAGCATAAATCCTACCCAGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR CCA 72 bp | AGTTCAATTTTGGAACTGCATGGGTCTTGTAGAGAATaGAACCAAACCACAAAGAATATAAGAGACTTGCCC | + |
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Preference number: 3 (lower is better) Translates to: SSILELHGSCRE*NQTTKNIRDLP Trigger: GGGCAAGTCTCTTATATTCTTTGTGGTTTGGTTCCATTCTCTACAAGACCCATGCAGTTCCAAAATTGAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR-3UTR CAA 90 bp | AATGGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTAGATTCCCTGTGGCTTTaGACAAATGGCTTGATGACT | + |
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Preference number: 3 (lower is better) Translates to: NGQLLHCDPNHHYFQVSLDSLWL*TNGLMT Trigger: AGTCATCAAGCCATTTGTCAAAAGCCACAGGGAATC...TAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR CCA 72 bp | TTTTGTATCATCCAAAGATCTCCATTGGATTCCCTGTaGCTTTTGACAAATGGCTTGATGACTATGTCTTAT | + |
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Preference number: 3 (lower is better) Translates to: FCIIQRSPLDSL*LLTNGLMTMSY Trigger: ATAAGACATAGTCATCAAGCCATTTGTCAAAAGCCACAGGGAATCCAATGGAGATCTTTGGATGATACAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR TCA 72 bp | TTTAGGTGTAATGCATCTTTGGTTCACTCAAGGAGCTaGGACATTCACTGTTTTCATCTAAAAATTGATACC | + |
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Preference number: 3 (lower is better) Translates to: FRCNASLVHSRS*DIHCFHLKIDT Trigger: GGTATCAATTTTTAGATGAAAACAGTGAATGTCTCAGCTCCTTGAGTGAACCAAAGATGCATTACACCTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR GCA 90 bp | TCTGCTGTCCAGGTGACTTTCAGTCCTCAGGAATTTATCTGCTTCTTCCAAACTCCAGTTGCTCTGCTGTaGTGTGCTAGGAGGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: SAVQVTFSPQEFICFFQTPVALL*CARRDH Trigger: GTGATCCCTCCTAGCACAGCACAGCAGAGCAACTGG...AGTTTGGAAGAAGCAGATAAATTCCTGAGGACTGAAAGTCACCTGGACAGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR TCA 90 bp | AACCACCCAACAGCAAACCCAAAGAAGGGTAGTGAACTTGGCTTCTGTTACTGTTCCCTCCAGAGCAGATaGTGTAGGGTGATTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: NHPTANPKKGSELGFCYCSLQSR*CRVISD Trigger: ATCTGAAATCACCCTACATCATCTGCTCTGGAGGGA...ACAGTAACAGAAGCCAAGTTCACTACCCTTCTTTGGGTTTGCTGTTGGGTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR CAA 72 bp | ACCACCCAACAGCAAACCCAAAGAAGGGTAGTGAACTaGGCTTCTGTTACTGTAGCTCATTCCCATAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: TTQQQTQRRVVN*ASVTVAHSHSF Trigger: GAAGCTATGGGAATGAGCTACAGTAACAGAAGCCAAGTTCACTACCCTTCTTTGGGTTTGCTGTTGGGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR CCA 90 bp | TGTATCATCCAAAGATCTCCATTGGATTCCCTGTGGCTTTTGACAAATGGCTTGGCTTGCTTCAGCTCATaGTGGAATGCACATGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: CIIQRSPLDSLWLLTNGLACFSS*WNAHAP Trigger: TGGAGCATGTGCATTCCACCATGAGCTGAAGCAAGC...CAAGCCATTTGTCAAAAGCCACAGGGAATCCAATGGAGATCTTTGGATGATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR TCA 90 bp | AATTCCCTGAAATTCCATAAGGACAGATACTTTGCTATTAGGTCCATCGAGGCGCTGCCTTCATTGCTTTaGACAAGAGGCAGACTGCTA | + |
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Preference number: 4 (lower is better) Translates to: NSLKFHKDRYFAIRSIEALPSLL*TRGRLL Trigger: TAGCAGTCTGCCTCTTGTTCAAAGCAATGAAGGCAG...CGCCTCGATGGACCTAATAGCAAAGTATCTGTCCTTATGGAATTTCAGGGAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR GCA 90 bp | GATGGTCAGAAGTATAGAACAAATCTTCCTGCAGTGACAACAACCACCCAACAGGAAGTTAGGGTCAAATaGTCACATCGTTGTCCCGTA | + |
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Preference number: 4 (lower is better) Translates to: DGQKYRTNLPAVTTTTQQEVRVK*SHRCPV Trigger: TACGGGACAACGATGTGAGCATTTGACCCTAACTTC...CTGTTGGGTGGTTGTTGTCACTGCAGGAAGATTTGTTCTATACTTCTGACCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR TCA 90 bp | AATTCCCTGAAATTCCATAAGGACAGATACTTTGCTATTAGGTCCATCGAGGCGTCTTCCAGACAAGGATaGGAGAACTTCAGAGCTACA | + |
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Preference number: 4 (lower is better) Translates to: NSLKFHKDRYFAIRSIEASSRQG*ENFRAT Trigger: TGTAGCTCTGAAGTTCTCTCATCCTTGTCTGGAAGA...CGCCTCGATGGACCTAATAGCAAAGTATCTGTCCTTATGGAATTTCAGGGAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR GCA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCACCAGTTGCTCTGCTGTaGTGTGCTAGGAGGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: VTQTTIIFKLAYHILYHPPVALL*CARRDH Trigger: GTGATCCCTCCTAGCACAGCACAGCAGAGCAACTGG...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR GCA 90 bp | ATACCAAATTCCCTGAAATTCCATAAGGACAGATACTTTGCTATTAGGTCCATCAATGTCCAGTTGCTCTaGTGTGCTGTGCTAGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: IPNSLKFHKDRYFAIRSINVQLL*CAVLGG Trigger: CCCTCCTAGCACAGCACAGCAGAGCAACTGGACATT...GATGGACCTAATAGCAAAGTATCTGTCCTTATGGAATTTCAGGGAATTTGGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR GCA 90 bp | AATTCCCTGAAATTCCATAAGGACAGATACTTTGCTATTAGGTCCATCGAGGCGCAGCTCATGGTGGAATaGACATGCTCCATTAATGCA | + |
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Preference number: 4 (lower is better) Translates to: NSLKFHKDRYFAIRSIEAQLMVE*TCSINA Trigger: TGCATTAATGGAGCATGTGCATTCCACCATGAGCTG...CGCCTCGATGGACCTAATAGCAAAGTATCTGTCCTTATGGAATTTCAGGGAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR GCA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCAAATGTCCAGTTGCTCTaGTGTGCTGTGCTAGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: VTQTTIIFKLAYHILYHPNVQLL*CAVLGG Trigger: CCCTCCTAGCACAGCACAGCAGAGCAACTGGACATT...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR GCA 90 bp | GGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACAGTGCTGCCTTCATTaGTTTGAACAAGAGGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: GQLLHCDPNHHYFQVSLSQCCLH*FEQEAD Trigger: GTCTGCCTCTTGTTCAAAGCAATGAAGGCAGCACTG...TGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR CCA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCAGCTTGCTTCAGCTCATaGTGGAATGCACATGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VTQTTIIFKLAYHILYHPACFSS*WNAHAP Trigger: TGGAGCATGTGCATTCCACCATGAGCTGAAGCAAGC...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR TCA 90 bp | CTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCCCTCCAGAGCAGATaGTGTAGGGTGATTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LHCDPNHHYFQVSLSHFVSLQSR*CRVISD Trigger: ATCTGAAATCACCCTACATCATCTGCTCTGGAGGGA...TACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR CAA 72 bp | ATCATCCAAAGATCTCCATTGGATTCCCTGTGGCTTTaGACAAATGGCTTGATGACTATGTCTTATAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: IIQRSPLDSLWL*TNGLMTMSYKV Trigger: GACCTTATAAGACATAGTCATCAAGCCATTTGTCAAAAGCCACAGGGAATCCAATGGAGATCTTTGGATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR CAA 72 bp | AACTGTTGTCACCAGCTGGGTAGGATTTATGCTGCCTaGGATATTCCATTTTCTTTTAGTGGTTTAGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: NCCHQLGRIYAA*DIPFSFSGLGV Trigger: TACACCTAAACCACTAAAAGAAAATGGAATATCCAAGGCAGCATAAATCCTACCCAGCTGGTGACAACAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR TCA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCATCTTCCAGACAAGGATaGGAGAACTTCAGAGCTACA | + |
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Preference number: 4 (lower is better) Translates to: VTQTTIIFKLAYHILYHPSSRQG*ENFRAT Trigger: TGTAGCTCTGAAGTTCTCTCATCCTTGTCTGGAAGA...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR GCA 90 bp | AATGGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTACAGCTCATGGTGGAATaGACATGCTCCATTAATGCA | + |
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Preference number: 4 (lower is better) Translates to: NGQLLHCDPNHHYFQVSLQLMVE*TCSINA Trigger: TGCATTAATGGAGCATGTGCATTCCACCATGAGCTG...TAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR GCA 90 bp | CTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTACATCTGCAAATGGCTTaGTTCAGCTCATGGTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LHCDPNHHYFQVSLSHFVHLQMA*FSSWWN Trigger: ATTCCACCATGAGCTGAAGCAAGCCATTTGCAGATG...TACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR GCA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCAGAAGTTAGGGTCAAATaGTCACATCGTTGTCCCGTA | + |
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Preference number: 4 (lower is better) Translates to: VTQTTIIFKLAYHILYHPEVRVK*SHRCPV Trigger: TACGGGACAACGATGTGAGCATTTGACCCTAACTTC...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| 3UTR CAA 72 bp | AGAGAATGGAACCAAACCACAAAGAATATAAGAGACTaGCCCAAGATTGAATCATGTAGCAGAAGCAATTCC | + |
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Preference number: 4 (lower is better) Translates to: REWNQTTKNIRD*PKIESCSRSNS Trigger: GGAATTGCTTCTGCTACATGATTCAATCTTGGGCAAGTCTCTTATATTCTTTGTGGTTTGGTTCCATTCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| 3UTR CAA 72 bp | ATGACAATATATAGTAAGGATAATATTCGTGGGTATTaGAGGGTTAGAAACGGGGCTGAGGATGGAAGCATT | + |
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Preference number: 4 (lower is better) Translates to: MTIYSKDNIRGY*RVRNGAEDGSI Trigger: AATGCTTCCATCCTCAGCCCCGTTTCTAACCCTCAAATACCCACGAATATTATCCTTACTATATATTGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR GCA 90 bp | GGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCAATGGTGGAATGCACATaGTCCATTAATGCAGTAACT | + |
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Preference number: 4 (lower is better) Translates to: GQLLHCDPNHHYFQVSLSMVECT*SINAVT Trigger: AGTTACTGCATTAATGGAGCATGTGCATTCCACCAT...TGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR GCA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCAATGGTGGAATGCACATaGTCCATTAATGCAGTAACT | + |
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Preference number: 4 (lower is better) Translates to: VTQTTIIFKLAYHILYHPMVECT*SINAVT Trigger: AGTTACTGCATTAATGGAGCATGTGCATTCCACCAT...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS GCA 90 bp | GCTAGGAGGGATCACCTCTGCTTCTTCGCTCAGTGCTGCCTTCATTaGTTTGAACAAGAGGCAGACTGCTATCAGAACCCCCAGAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: ARRDHLCFFAQCCLH*FEQEADCYQNPQSH Trigger: ATGGCTCTGGGGGTTCTGATAGCAGTCTGCCTCTTGTTCAAAGCAATGAAGGCAGCACTGAGCGAAGAAGCAGAGGTGATCCCTCCTAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS GCA 90 bp | CTGCTGTGCTGTGCTAGGAGGGATCACCTCTGCTTCTTCGCTCAGTaGTGCCTTCATTGCTTTGAACAAGAGGCAGACTGCTATCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: LLCCARRDHLCFFAQ*CLHCFEQEADCYQN Trigger: GTTCTGATAGCAGTCTGCCTCTTGTTCAAAGCAATGAAGGCAGCACTGAGCGAAGAAGCAGAGGTGATCCCTCCTAGCACAGCACAGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS GCA 90 bp | AAATGTCCAGTTGCTCTGCTGTGCTGTGCTAGGAGGGATCACCTCTaGTTCTTCGCTCAGTGCTGCCTTCATTGCTTTGAACAAGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: KCPVALLCCARRDHL*FFAQCCLHCFEQEA Trigger: TGCCTCTTGTTCAAAGCAATGAAGGCAGCACTGAGCGAAGAAGCAGAGGTGATCCCTCCTAGCACAGCACAGCAGAGCAACTGGACATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS GCA 90 bp | TATGTAGTCAGCTTCGGTGTTGTTAAATGTCCAGTTGCTCTGCTGTaGTGTGCTAGGAGGGATCACCTCTGCTTCTTCGCTCAGTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: YVVSFGVVKCPVALL*CARRDHLCFFAQCC Trigger: GCAGCACTGAGCGAAGAAGCAGAGGTGATCCCTCCTAGCACAGCACAGCAGAGCAACTGGACATTTAACAACACCGAAGCTGACTACATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR CAA 90 bp | TCTGCTGTCCAGGTGACTTTCAGTCCTCAGGAATTTATCTGCTTCTTCCAAACTGCTGCCTTCATTGCTTaGAACAAGAGGCAGACTGCT | + |
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Preference number: 5 (lower is better) Translates to: SAVQVTFSPQEFICFFQTAAFIA*NKRQTA Trigger: AGCAGTCTGCCTCTTGTTCAAAGCAATGAAGGCAGC...AGTTTGGAAGAAGCAGATAAATTCCTGAGGACTGAAAGTCACCTGGACAGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS-3UTR CAA 90 bp | TGTATCATCCAAAGATCTCCATTGGATTCCCTGTGGCTTTTGACAAATGGCTTGGCATCTGCAAATGGCTaGCTTCAGCTCATGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: CIIQRSPLDSLWLLTNGLASANG*LQLMVE Trigger: TTCCACCATGAGCTGAAGCAAGCCATTTGCAGATGC...CAAGCCATTTGTCAAAAGCCACAGGGAATCCAATGGAGATCTTTGGATGATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS GCA 90 bp | AAAGCATCTGCAAATGGCTTGCTTCAGCTCATGGTGGAATGCACATaGTCCATTAATGCAGTAACTATTATGGTCTTCCAGACAAGGATG | + |
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Preference number: 5 (lower is better) Translates to: KASANGLLQLMVECT*SINAVTIMVFQTRM Trigger: CATCCTTGTCTGGAAGACCATAATAGTTACTGCATTAATGGAGCATGTGCATTCCACCATGAGCTGAAGCAAGCCATTTGCAGATGCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS GCA 90 bp | ACCAGTAAAGCATCTGCAAATGGCTTGCTTCAGCTCATGGTGGAATaGACATGCTCCATTAATGCAGTAACTATTATGGTCTTCCAGACA | + |
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Preference number: 5 (lower is better) Translates to: TSKASANGLLQLMVE*TCSINAVTIMVFQT Trigger: TGTCTGGAAGACCATAATAGTTACTGCATTAATGGAGCATGTGCATTCCACCATGAGCTGAAGCAAGCCATTTGCAGATGCTTTACTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR CAA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCAGCATCTGCAAATGGCTaGCTTCAGCTCATGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: VTQTTIIFKLAYHILYHPASANG*LQLMVE Trigger: TTCCACCATGAGCTGAAGCAAGCCATTTGCAGATGC...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR CAA 90 bp | AATGGTCAATTACTGCATTGTGACCCAAACCACCATTATTTTCAAGTTAGCTTACAAATGCTCACATCGTaGTCCCGTATAACCAGTAAA | + |
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Preference number: 5 (lower is better) Translates to: NGQLLHCDPNHHYFQVSLQMLTS*SRITSK Trigger: TTTACTGGTTATACGGGACAACGATGTGAGCATTTG...TAAGCTAACTTGAAAATAATGGTGGTTTGGGTCACAATGCAGTAATTGACCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS-3UTR CAA 90 bp | GTGACCCAAACCACCATTATTTTCAAGTTAGCTTATCACATTTTGTATCATCCACAAATGCTCACATCGTaGTCCCGTATAACCAGTAAA | + |
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Preference number: 5 (lower is better) Translates to: VTQTTIIFKLAYHILYHPQMLTS*SRITSK Trigger: TTTACTGGTTATACGGGACAACGATGTGAGCATTTG...TGGATGATACAAAATGTGATAAGCTAACTTGAAAATAATGGTGGTTTGGGTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS GCA 72 bp | GTTGCTCTGCTGTGCTGTGCTAGGAGGGATCACCTCTaGTTCTTCGCTCAGTGCTGCCTTCATTGCTTTGAA | + |
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Preference number: 6 (lower is better) Translates to: VALLCCARRDHL*FFAQCCLHCFE Trigger: TTCAAAGCAATGAAGGCAGCACTGAGCGAAGAAGCAGAGGTGATCCCTCCTAGCACAGCACAGCAGAGCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS GCA 72 bp | GCTAGGAGGGATCACCTCTGCTTCTTCGCTCAGTGCTaGCTTCATTGCTTTGAACAAGAGGCAGACTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: ARRDHLCFFAQC*LHCFEQEADCY Trigger: ATAGCAGTCTGCCTCTTGTTCAAAGCAATGAAGGCAGCACTGAGCGAAGAAGCAGAGGTGATCCCTCCTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS GCA 72 bp | AGCTTCGGTGTTGTTAAATGTCCAGTTGCTCTGCTGTaGTGTGCTAGGAGGGATCACCTCTGCTTCTTCGCT | + |
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Preference number: 6 (lower is better) Translates to: SFGVVKCPVALL*CARRDHLCFFA Trigger: AGCGAAGAAGCAGAGGTGATCCCTCCTAGCACAGCACAGCAGAGCAACTGGACATTTAACAACACCGAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS CAA 72 bp | ACCTCTGCTTCTTCGCTCAGTGCTGCCTTCATTGCTTaGAACAAGAGGCAGACTGCTATCAGAACCCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: TSASSLSAAFIA*NKRQTAIRTPR Trigger: TCTGGGGGTTCTGATAGCAGTCTGCCTCTTGTTCAAAGCAATGAAGGCAGCACTGAGCGAAGAAGCAGAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041516.9 |
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| CDS GCA 72 bp | GCAAATGGCTTGCTTCAGCTCATGGTGGAATGCACATaGTCCATTAATGCAGTAACTATTATGGTCTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: ANGLLQLMVECT*SINAVTIMVFQ Trigger: CTGGAAGACCATAATAGTTACTGCATTAATGGAGCATGTGCATTCCACCATGAGCTGAAGCAAGCCATTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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| CDS GCA 72 bp | GCATCTGCAAATGGCTTGCTTCAGCTCATGGTGGAATaGACATGCTCCATTAATGCAGTAACTATTATGGTC | + |
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Preference number: 6 (lower is better) Translates to: ASANGLLQLMVE*TCSINAVTIMV Trigger: GACCATAATAGTTACTGCATTAATGGAGCATGTGCATTCCACCATGAGCTGAAGCAAGCCATTTGCAGATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041516.9 ENSMUST00000202724.4 |
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