Pregenerated sensors for EPCAM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045394Ensembl transcript IDs: ENSMUST00000053577.9, ENSMUST00000234009.2, ENSMUST00000234623.2, ENSMUST00000235125.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTACAGTCCGAGCTCTTCTaGCACTTCCGGTCGGGCGGC | + |
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Preference number: 2 (lower is better) Translates to: VKASQWQSRYTAATSEALQSELF*HFRSGG Trigger: GCCGCCCGACCGGAAGTGGCAGAAGAGCTCGGACTG...TAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCCAGTCCGAGCTCTTCTaGCACTTCCGGTCGGGCGGC | + |
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Preference number: 2 (lower is better) Translates to: KASQWQSRYTAATSEALTQSELF*HFRSGG Trigger: GCCGCCCGACCGGAAGTGGCAGAAGAGCTCGGACTG...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| 3UTR-3UTR GCA 90 bp | GTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTATACTGTTGGAATGTTTaGGACGCACACTCTGTCATA | + |
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Preference number: 2 (lower is better) Translates to: VKASQWQSRYTAATSEALYCWNV*DAHSVI Trigger: TATGACAGAGTGTGCGTCGCAAACATTCCAACAGTA...TAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| 3UTR-3UTR GCA 90 bp | AGTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTTACTGTTGGAATGTTTaGGACGCACACTCTGTCATA | + |
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Preference number: 2 (lower is better) Translates to: SQGQSVAEQIHSSYLGSAYCWNV*DAHSVI Trigger: TATGACAGAGTGTGCGTCGCAAACATTCCAACAGTA...AGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| 3UTR-3UTR TCA 90 bp | TATTTCTTTCAGATAGGGTGTTGGATAGTCAAGGCCAGTCAGTGGCAGAGCAGATTGCAGGCTAAGTTCTaGGTACCACACTGGACCTGC | + |
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Preference number: 2 (lower is better) Translates to: YFFQIGCWIVKASQWQSRLQAKF*VPHWTC Trigger: GCAGGTCCAGTGTGGTACTCAGAACTTAGCCTGCAA...TCTGCTCTGCCACTGACTGGCCTTGACTATCCAACACCCTATCTGAAAGAAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | AGTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTGCTTTGAAGAGCCCCTaGTCGTCGCAGTCGGGGTCG | + |
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Preference number: 4 (lower is better) Translates to: SQGQSVAEQIHSSYLGSAALKSP*SSQSGS Trigger: CGACCCCGACTGCGACGAGCAGGGGCTCTTCAAAGC...AGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCGCTTTGAAGAGCCCCTaGTCGTCGCAGTCGGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: KASQWQSRYTAATSEALTALKSP*SSQSGS Trigger: CGACCCCGACTGCGACGAGCAGGGGCTCTTCAAAGC...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR TCA 90 bp | AGTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTTGCACTGCTTGGCTTTaGAGAGCCCCTGCTCGTCGC | + |
|
Preference number: 4 (lower is better) Translates to: SQGQSVAEQIHSSYLGSACTAWL*RAPARR Trigger: GCGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCA...AGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR TCA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCTGCACTGCTTGGCTTTaGAGAGCCCCTGCTCGTCGC | + |
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Preference number: 4 (lower is better) Translates to: KASQWQSRYTAATSEALTCTAWL*RAPARR Trigger: GCGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCA...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | GTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAGCGGTGCCGTTGCACTaGTTGGCTTTGAAGAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: VKASQWQSRYTAATSEALAVPLH*LALKSP Trigger: GGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGC...TAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCCAGAGAGCAACTTGTTaGCAGCTTGTAGTTGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: KASQWQSRYTAATSEALTQRATC*QLVVVT Trigger: TGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTG...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | ATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTATACATCTGCACCAGCACGTGGCGGTaGCGTTGCACTGCTTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: IKAVTLRRSSSSPGLYICTSTWR*RCTAWL Trigger: AAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGT...GCAGATGTATAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | TATTTCTTTCAGATAGGGTGTTGGATAGTCAAGGCCAGTCAGTGGCAGAGCAGAACCAGCACGTGGCGGTaGCGTTGCACTGCTTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: YFFQIGCWIVKASQWQSRTSTWR*RCTAWL Trigger: AAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGT...TCTGCTCTGCCACTGACTGGCCTTGACTATCCAACACCCTATCTGAAAGAAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234623.2 |
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| CDS-3UTR TCA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCCCAGTTTGGAGCAAATaGCAGTATTCTGTGTACCAT | + |
|
Preference number: 4 (lower is better) Translates to: KASQWQSRYTAATSEALTPVWSK*QYSVYH Trigger: ATGGTACACAGAATACTGTCATTTGCTCCAAACTGG...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR TCA 90 bp | GTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTACCAGTTTGGAGCAAATaGCAGTATTCTGTGTACCAT | + |
|
Preference number: 4 (lower is better) Translates to: VKASQWQSRYTAATSEALPVWSK*QYSVYH Trigger: ATGGTACACAGAATACTGTCATTTGCTCCAAACTGG...TAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | AGTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTGCTGTGAGTCATTTCTaGTTTCATCGCCAAGCATTT | + |
|
Preference number: 4 (lower is better) Translates to: SQGQSVAEQIHSSYLGSAAVSHF*FHRQAF Trigger: AAATGCTTGGCGATGAAAGCAGAAATGACTCACAGC...AGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | AAAGTAACTATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTAGCGGTGCCGTTGCACTaGTTGGCTTTGAAGAGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: KVTIKAVTLRRSSSSPGLAVPLH*LALKSP Trigger: GGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGC...TAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGATAGTTACTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR TCA 90 bp | ATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTATACATCTGCCTCCCAGACTTGCTGTaGGTCATTTCTGCTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: IKAVTLRRSSSSPGLYICLPDLL*VISAFI Trigger: GATGAAAGCAGAAATGACTCACAGCAAGTCTGGGAG...GCAGATGTATAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | ATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTATACATCTGCCAGAGAGCAACTTGTTaGCAGCTTGTAGTTGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: IKAVTLRRSSSSPGLYICQRATC*QLVVVT Trigger: TGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTG...GCAGATGTATAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | GTTTGCGACGCACACTCTGTCATAATAAGCATCAACTCTCTTAACTTTGCAGGCTCCTCCTCCCAGACTTaGTGTGAGTCATTTCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: VCDAHSVIISINSLNFAGSSSQT*CESFLL Trigger: AAGCAGAAATGACTCACAGCAAGTCTGGGAGGAGGA...GCCTGCAAAGTTAAGAGAGTTGATGCTTATTATGACAGAGTGTGCGTCGCAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR GCA 90 bp | TATTTCTTTCAGATAGGGTGTTGGATAGTCAAGGCCAGTCAGTGGCAGAGCAGAGCTGTGAGTCATTTCTaGTTTCATCGCCAAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: YFFQIGCWIVKASQWQSRAVSHF*FHRQAF Trigger: AAATGCTTGGCGATGAAAGCAGAAATGACTCACAGC...TCTGCTCTGCCACTGACTGGCCTTGACTATCCAACACCCTATCTGAAAGAAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234623.2 |
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| CDS-3UTR TCA 90 bp | GGTTTGTACCAGTTAGCAGTGCCAGAGCATTTAGACATCTATTATCTTAATTATTCGTCTTGTGTTTTCTaGGAAGAGTTTTGCATCAGA | + |
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Preference number: 4 (lower is better) Translates to: GLYQLAVPEHLDIYYLNYSSCVF*EEFCIR Trigger: TCTGATGCAAAACTCTTCTCAGAAAACACAAGACGA...ATAATTAAGATAATAGATGTCTAAATGCTCTGGCACTGCTAACTGGTACAAACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | AGTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTGTGCCGTTGCACTGCTaGGCTTTGAAGAGCCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: SQGQSVAEQIHSSYLGSAVPLHC*ALKSPC Trigger: GCAGGGGCTCTTCAAAGCCAAGCAGTGCAACGGCAC...AGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | GTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTACACGTGGCGGTGCCGTaGCACTGCTTGGCTTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: VKASQWQSRYTAATSEALHVAVP*HCLALK Trigger: CTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTG...TAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCTTGCACTGCTTGGCTTaGAAGAGCCCCTGCTCGTCG | + |
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Preference number: 5 (lower is better) Translates to: KASQWQSRYTAATSEALTLHCLA*KSPCSS Trigger: CGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAA...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | AAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAACCTCAGAGAGCAACTTGTaGCCAGCTTGTAGTTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: KASQWQSRYTAATSEALTSESNL*PACSCH Trigger: GTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGA...GGTTAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | ATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTATACATCTGCTTGCACTGCTTGGCTTaGAAGAGCCCCTGCTCGTCG | + |
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Preference number: 5 (lower is better) Translates to: IKAVTLRRSSSSPGLYICLHCLA*KSPCSS Trigger: CGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAA...GCAGATGTATAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | GTTTGCGACGCACACTCTGTCATAATAAGCATCAACTCTCTTAACTTTGCAGGCCACGTGGCGGTGCCGTaGCACTGCTTGGCTTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: VCDAHSVIISINSLNFAGHVAVP*HCLALK Trigger: CTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTG...GCCTGCAAAGTTAAGAGAGTTGATGCTTATTATGACAGAGTGTGCGTCGCAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS GCA 90 bp | GGAAGTACACTGGCATTCACCATATTCATTCAGAGAGCAACTTGTTaGCAGCTTGTAGTTGTCACAGACACAGTCTCTCTGAGCCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: GSTLAFTIFIQRATC*QLVVVTDTVSLSRG Trigger: GCCGCGGCTCAGAGAGACTGTGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCAGTGTACTTCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS GCA 90 bp | CCCTTCGGGCTTTATCCTCCTCCCAGACTTGCTGTGAGTCATTTCTaGTTTCATCGCCAAGCATTTAGACGCCAGTTTGGAGCAAATGAC | + |
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Preference number: 5 (lower is better) Translates to: PFGLYPPPRLAVSHF*FHRQAFRRQFGAND Trigger: GTCATTTGCTCCAAACTGGCGTCTAAATGCTTGGCGATGAAAGCAGAAATGACTCACAGCAAGTCTGGGAGGAGGATAAAGCCCGAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | GTCAAGGCCAGTCAGTGGCAGAGCAGATACACAGCAGCTACCTCGGAAGCGCTAGGGCTTTCTCTTTCTTaGTGTTTTAGTTCAATGATG | + |
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Preference number: 5 (lower is better) Translates to: VKASQWQSRYTAATSEALGLSLS*CFSSMM Trigger: CATCATTGAACTAAAACACAAAGAAAGAGAAAGCCC...TAGCGCTTCCGAGGTAGCTGCTGTGTATCTGCTCTGCCACTGACTGGCCTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | ATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTATACATCTGCAGATGTGAACGCCTCTaGAAGCGCAGTCTGCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: IKAVTLRRSSSSPGLYICRCERL*KRSLQA Trigger: AGCTTGCAGACTGCGCTTCAAGAGGCGTTCACATCT...GCAGATGTATAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | TATTTCTTTCAGATAGGGTGTTGGATAGTCAAGGCCAGTCAGTGGCAGAGCAGATCAGAGAGCAACTTGTaGCCAGCTTGTAGTTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: YFFQIGCWIVKASQWQSRSESNL*PACSCH Trigger: GTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGA...TCTGCTCTGCCACTGACTGGCCTTGACTATCCAACACCCTATCTGAAAGAAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | TATTTCTTTCAGATAGGGTGTTGGATAGTCAAGGCCAGTCAGTGGCAGAGCAGAGGGCTTTCTCTTTCTTaGTGTTTTAGTTCAATGATG | + |
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Preference number: 5 (lower is better) Translates to: YFFQIGCWIVKASQWQSRGLSLS*CFSSMM Trigger: CATCATTGAACTAAAACACAAAGAAAGAGAAAGCCC...TCTGCTCTGCCACTGACTGGCCTTGACTATCCAACACCCTATCTGAAAGAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234623.2 |
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| CDS-3UTR CAA 90 bp | ATCAAAGCAGTAACCCTTCGCAGGTCTTCATCTTCCCCAGGTTTATACATCTGCTTTCTGAGAAGAGTTTaGCATCAGATCAATGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: IKAVTLRRSSSSPGLYICFLRRV*HQINGD Trigger: ATCACCATTGATCTGATGCAAAACTCTTCTCAGAAA...GCAGATGTATAAACCTGGGGAAGATGAAGACCTGCGAAGGGTTACTGCTTTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 90 bp | CTTCGGACTCCGGCGGTGTTGACACACCAGCACGTGGCGGTGCCGTaGCACTGCTTGGCTTTGAAGAGCCCCTGCTCGTCGCAGTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: LRTPAVLTHQHVAVP*HCLALKSPCSSQSG Trigger: CCCCGACTGCGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAACACCGCCGGAGTCCGAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 72 bp | CCGGCGGTGTTGACACACCAGCACGTGGCGGTGCCGTaGCACTGCTTGGCTTTGAAGAGCCCCTGCTCGTCG | + |
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Preference number: 6 (lower is better) Translates to: PAVLTHQHVAVP*HCLALKSPCSS Trigger: CGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAACACCGCCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS TCA 72 bp | ACCAGCACGTGGCGGTGCCGTTGCACTGCTTGGCTTTaGAGAGCCCCTGCTCGTCGCAGTCGGGGTCGTACA | + |
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Preference number: 6 (lower is better) Translates to: TSTWRCRCTAWL*RAPARRSRGRT Trigger: TGTACGACCCCGACTGCGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS TCA 72 bp | CCGTGTCCTTGTCGGTTCTTCGGACTCCGGCGGTGTTaGCACACCAGCACGTGGCGGTGCCGTTGCACTGCT | + |
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Preference number: 6 (lower is better) Translates to: PCPCRFFGLRRC*HTSTWRCRCTA Trigger: AGCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAACACCGCCGGAGTCCGAAGAACCGACAAGGACACGG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 72 bp | TTGACACACCAGCACGTGGCGGTGCCGTTGCACTGCTaGGCTTTGAAGAGCCCCTGCTCGTCGCAGTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: LTHQHVAVPLHC*ALKSPCSSQSG Trigger: CCCCGACTGCGACGAGCAGGGGCTCTTCAAAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 72 bp | TCCGTGTCCTTGTCGGTTCTTCGGACTCCGGCGGTGTaGACACACCAGCACGTGGCGGTGCCGTTGCACTGC | + |
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Preference number: 6 (lower is better) Translates to: SVSLSVLRTPAV*THQHVAVPLHC Trigger: GCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAACACCGCCGGAGTCCGAAGAACCGACAAGGACACGGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 72 bp | CCCTGCTCGTCGCAGTCGGGGTCGTACAGCCCATCGTaGTTCTGGATCGCCCCTTCGGGCTTTATCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: PCSSQSGSYSPS*FWIAPSGFILL Trigger: GAGGAGGATAAAGCCCGAAGGGGCGATCCAGAACAACGATGGGCTGTACGACCCCGACTGCGACGAGCAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS CAA 90 bp | CACGTGATCTCCGTGTCCTTGTCGGTTCTTCGGACTCCGGCGGTGTaGACACACCAGCACGTGGCGGTGCCGTTGCACTGCTTGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: HVISVSLSVLRTPAV*THQHVAVPLHCLAL Trigger: CAAAGCCAAGCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAACACCGCCGGAGTCCGAAGAACCGACAAGGACACGGAGATCACGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CCA 72 bp | TCGTCGCAGTCGGGGTCGTACAGCCCATCGTTGTTCTaGATCGCCCCTTCGGGCTTTATCCTCCTCCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SSQSGSYSPSLF*IAPSGFILLPD Trigger: GTCTGGGAGGAGGATAAAGCCCGAAGGGGCGATCCAGAACAACGATGGGCTGTACGACCCCGACTGCGACGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS TCA 72 bp | GCCCCTTCGGGCTTTATCCTCCTCCCAGACTTGCTGTaGGTCATTTCTGCTTTCATCGCCAAGCATTTAGAC | + |
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Preference number: 6 (lower is better) Translates to: APSGFILLPDLL*VISAFIAKHLD Trigger: GTCTAAATGCTTGGCGATGAAAGCAGAAATGACTCACAGCAAGTCTGGGAGGAGGATAAAGCCCGAAGGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS CAA 90 bp | AGGAAGTACACTGGCATTCACCATATTCATTCAGAGAGCAACTTGTaGCCAGCTTGTAGTTGTCACAGACACAGTCTCTCTGAGCCGCGG | + |
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Preference number: 6 (lower is better) Translates to: RKYTGIHHIHSESNL*PACSCHRHSLSEPR Trigger: CCGCGGCTCAGAGAGACTGTGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCAGTGTACTTCCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS CAA 72 bp | TTTCTGATTCAGCTTATATCGAGATGTGAACGCCTCTaGAAGCGCAGTCTGCAAGCTCTGATGGTCGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: FLIQLISRCERL*KRSLQALMVVG Trigger: CCCTACGACCATCAGAGCTTGCAGACTGCGCTTCAAGAGGCGTTCACATCTCGATATAAGCTGAATCAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 90 bp | CATAGGAAGTACACTGGCATTCACCATATTCATTCAGAGAGCAACTaGTTGCCAGCTTGTAGTTGTCACAGACACAGTCTCTCTGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: HRKYTGIHHIHSESN*LPACSCHRHSLSEP Trigger: CGGCTCAGAGAGACTGTGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCAGTGTACTTCCTATG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS GCA 72 bp | CTTTATCCTCCTCCCAGACTTGCTGTGAGTCATTTCTaGTTTCATCGCCAAGCATTTAGACGCCAGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LYPPPRLAVSHF*FHRQAFRRQFG Trigger: TCCAAACTGGCGTCTAAATGCTTGGCGATGAAAGCAGAAATGACTCACAGCAAGTCTGGGAGGAGGATAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 |
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| CDS GCA 72 bp | CTGGCATTCACCATATTCATTCAGAGAGCAACTTGTTaGCAGCTTGTAGTTGTCACAGACACAGTCTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LAFTIFIQRATC*QLVVVTDTVSL Trigger: CAGAGAGACTGTGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 ENSMUST00000235125.2 |
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| CDS CAA 90 bp | TTTGATAAATTTCTGATTCAGCTTATATCGAGATGTGAACGCCTCTaGAAGCGCAGTCTGCAAGCTCTGATGGTCGTAGGGGCTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: FDKFLIQLISRCERL*KRSLQALMVVGAFS Trigger: AGAGAAAGCCCCTACGACCATCAGAGCTTGCAGACTGCGCTTCAAGAGGCGTTCACATCTCGATATAAGCTGAATCAGAAATTTATCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053577.9 ENSMUST00000234623.2 |
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| CDS CAA 72 bp | TACACTGGCATTCACCATATTCATTCAGAGAGCAACTaGTTGCCAGCTTGTAGTTGTCACAGACACAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: YTGIHHIHSESN*LPACSCHRHSL Trigger: GAGACTGTGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCAGTGTA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053577.9 ENSMUST00000234009.2 ENSMUST00000234623.2 ENSMUST00000235125.2 |
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