RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EPB42 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023216

Ensembl transcript IDs: ENSMUST00000023987.6, ENSMUST00000102490.10

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTACAGGCTGCAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTaGAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAA +
Preference number: 1 (lower is better)
Translates to: STGCRKRDTGPGLGF*NFKAHPPATHFLQQ
Trigger: TTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTGCAGCCTGTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 90 bp TTTTACATCTCAATCTACAGGCTGCAGGAAGAGAGACACTGGGCCTaGCTTGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACA +
Preference number: 1 (lower is better)
Translates to: FYISIYRLQEERHWA*LGLLKLQSPPTSNT
Trigger: TGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTGCAGCCTGTAGATTGAGATGTAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 90 bp ACTGCTCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTaGGGTGTGGTGTATGACCTGAATAGAGTCCCCCGAAAACACCAG +
Preference number: 1 (lower is better)
Translates to: TALEDHMLESRVKLQ*GVVYDLNRVPRKHQ
Trigger: CTGGTGTTTTCGGGGGACTCTATTCAGGTCATACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGAGCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR TCA 90 bp AAGCTCACCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTaGTGTTTGTGTCTACTACGGAGTTTTGGACACTGGAGTATAGAC +
Preference number: 1 (lower is better)
Translates to: KLTHAVGFRQEFCKF*CLCLLRSFGHWSID
Trigger: GTCTATACTCCAGTGTCCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGGTGAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
3UTR-3UTR TCA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTTGGGAAAGGCCCAGTaGTGGGAAGAACAGAGACCT +
Preference number: 2 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDLGKAQ*WEEQRP
Trigger: AGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAA...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
3UTR-3UTR TCA 90 bp CAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACTTCAAAGCCCACCCTTCTGTGAATCTAGCTaGTTTTTGGCCACTGGTCTG +
Preference number: 2 (lower is better)
Translates to: QEERHWAWLGLLKLQSPPFCESS*FLATGL
Trigger: CAGACCAGTGGCCAAAAATCAGCTAGATTCACAGAA...GGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR-3UTR TCA 90 bp GGAGCATGGCAGCATTCAGGCAGACATAGGCCCGGAGAAGTAGCTGAGAGTTTTAATCTGAATGTACTCTaGAAAGGTAGTCAGAACATC +
Preference number: 2 (lower is better)
Translates to: GAWQHSGRHRPGEVAESFNLNVL*KGSQNI
Trigger: GATGTTCTGACTACCTTTTCAGAGTACATTCAGATT...AAAACTCTCAGCTACTTCTCCGGGCCTATGTCTGCCTGAATGCTGCCATGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR-3UTR CCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCTCTACTACGGAGTTTTaGACACTGGAGTATAGACCA +
Preference number: 2 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVSTTEF*TLEYRP
Trigger: TGGTCTATACTCCAGTGTCCAAAACTCCGTAGTAGA...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
3UTR-3UTR CCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTGATACAAATGGATTTTaGAGCCAGGCAGTGGTGGCG +
Preference number: 2 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTDTNGF*SQAVVA
Trigger: CGCCACCACTGCCTGGCTCCAAAATCCATTTGTATC...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR-3UTR CCA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGCTATCCACTCATCTTTaGGTCTTTTACAATAGCCAC +
Preference number: 2 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKLSTHL*VFYNSH
Trigger: GTGGCTATTGTAAAAGACCCAAAGATGAGTGGATAG...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR-3UTR TCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACGGTGACTCCAGTGTATaGCCAAGTTTAAGCAGGATT +
Preference number: 2 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYGDSSV*PSLSRI
Trigger: AATCCTGCTTAAACTTGGTCATACACTGGAGTCACC...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
3UTR-3UTR TCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTTGCCTTAGGTTGGCTTaGTACAAATGGATTTTGGAG +
Preference number: 2 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTCLRLA*YKWILE
Trigger: CTCCAAAATCCATTTGTATCAAGCCAACCTAAGGCA...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR TCA 72 bp TGCAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTaGAACTTCAAAGCCCACCCACCAGCAACACACTTC +
Preference number: 3 (lower is better)
Translates to: CRKRDTGPGLGF*NFKAHPPATHF
Trigger: GAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 72 bp GTTGGCTTGATACAAATGGATTTTGGAGCCAGGCAGTaGTGGCGCACGCCTTTAATCCCAGTACTTGGGAGG +
Preference number: 3 (lower is better)
Translates to: VGLIQMDFGARQ*WRTPLIPVLGR
Trigger: CCTCCCAAGTACTGGGATTAAAGGCGTGCGCCACCACTGCCTGGCTCCAAAATCCATTTGTATCAAGCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 72 bp CTGACTGCCTTAGGTTGGCTTGATACAAATGGATTTTaGAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCC +
Preference number: 3 (lower is better)
Translates to: LTALGWLDTNGF*SQAVVAHAFNP
Trigger: GGGATTAAAGGCGTGCGCCACCACTGCCTGGCTCCAAAATCCATTTGTATCAAGCCAACCTAAGGCAGTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR-3UTR CAA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGCCACTGGTCTGTTGCTaGGTAGGCAGAATTCCCCTC +
Preference number: 3 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKPLVCC*VGRIPL
Trigger: GAGGGGAATTCTGCCTACCAAGCAACAGACCAGTGG...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR GCA 72 bp GAAGTAGCTGAGAGTTTTACATCTCAATCTACAGGCTaGAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTT +
Preference number: 3 (lower is better)
Translates to: EVAESFTSQSTG*RKRDTGPGLGF
Trigger: AAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTGCAGCCTGTAGATTGAGATGTAAAACTCTCAGCTACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 72 bp GAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTaGGGTGTGGTGTATGACCTGAATAGAGTCCCCCGA +
Preference number: 3 (lower is better)
Translates to: EDHMLESRVKLQ*GVVYDLNRVPR
Trigger: TCGGGGGACTCTATTCAGGTCATACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR GCA 72 bp TCTGTGAATCTAGCTGATTTTTGGCCACTGGTCTGTTaGTTGGTAGGCAGAATTCCCCTCTGGAGCATGTCT +
Preference number: 3 (lower is better)
Translates to: SVNLADFWPLVC*LVGRIPLWSMS
Trigger: AGACATGCTCCAGAGGGGAATTCTGCCTACCAAGCAACAGACCAGTGGCCAAAAATCAGCTAGATTCACAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR TCA 72 bp AAGACAAATAGTGTTTCTGACTGCCTTAGGTTGGCTTaGTACAAATGGATTTTGGAGCCAGGCAGTGGTGGC +
Preference number: 3 (lower is better)
Translates to: KTNSVSDCLRLA*YKWILEPGSGG
Trigger: GCCACCACTGCCTGGCTCCAAAATCCATTTGTATCAAGCCAACCTAAGGCAGTCAGAAACACTATTTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 72 bp AAATGGATTTTGGTTTCTGTGAATCTAGCTGATTTTTaGCCACTGGTCTGTTGCTTGGTAGGCAGAATTCCC +
Preference number: 3 (lower is better)
Translates to: KWILVSVNLADF*PLVCCLVGRIP
Trigger: GGGAATTCTGCCTACCAAGCAACAGACCAGTGGCCAAAAATCAGCTAGATTCACAGAAACCAAAATCCATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CCA 72 bp AGTCTAAGACAAATAGTGTTTCTGACTGCCTTAGGTTaGCTTGATACAAATGGATTTTGGAGCCAGGCAGTG +
Preference number: 3 (lower is better)
Translates to: SLRQIVFLTALG*LDTNGFWSQAV
Trigger: CACTGCCTGGCTCCAAAATCCATTTGTATCAAGCCAACCTAAGGCAGTCAGAAACACTATTTGTCTTAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR TCA 72 bp ATGAAACATCTGAACACCCCAAATCTGAATGTACTCTaGAAAGGTAGTCAGAACATCTCATTATACTTTGAG +
Preference number: 3 (lower is better)
Translates to: MKHLNTPNLNVL*KGSQNISLYFE
Trigger: CTCAAAGTATAATGAGATGTTCTGACTACCTTTTCAGAGTACATTCAGATTTGGGGTGTTCAGATGTTTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR TCA 72 bp GAACAACAGTTCTCAACCATGGATTTCGAAACCCTTTaGTGGTCACATATCATATATCCTGAATATCAGATA +
Preference number: 3 (lower is better)
Translates to: EQQFSTMDFETL*WSHIIYPEYQI
Trigger: TATCTGATATTCAGGATATATGATATGTGACCATCAAAGGGTTTCGAAATCCATGGTTGAGAACTGTTGTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp CAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACTTCAAAGCCCACCCGCCACTGCCTCAGGATaGGCACGCTGCCCCGACGTT +
Preference number: 4 (lower is better)
Translates to: QEERHWAWLGLLKLQSPPATASG*ARCPDV
Trigger: AACGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGC...GGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp GGAGCATGGCAGCATTCAGGCAGACATAGGCCCGGAGAAGTAGCTGAGAGTTTTCTCGTCCTTGGCCAGTaGGCCACTGCCTCAGGATGG +
Preference number: 4 (lower is better)
Translates to: GAWQHSGRHRPGEVAESFLVLGQ*ATASGW
Trigger: CCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAG...AAAACTCTCAGCTACTTCTCCGGGCCTATGTCTGCCTGAATGCTGCCATGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp GGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCCGACTCGAGCTGGGATaGCCAGGCACCGTAGCACTG +
Preference number: 4 (lower is better)
Translates to: GPVMGRTETSFVVVPWMSRLELG*PGTVAL
Trigger: CAGTGCTACGGTGCCTGGGCATCCCAGCTCGAGTCG...GCTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACGCCACTGCCTCAGGATaGGCACGCTGCCCCGACGTT +
Preference number: 4 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDATASG*ARCPDV
Trigger: AACGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGC...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp CAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACTTCAAAGCCCACCCGGCAGCCTGGGTCTGTaGAATAGGCAGGACACTCTT +
Preference number: 4 (lower is better)
Translates to: QEERHWAWLGLLKLQSPPGSLGL*NRQDTL
Trigger: AAGAGTGTCCTGCCTATTTCACAGACCCAGGCTGCC...GGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCTCGTCCTTGGCCAGTaGGCCACTGCCTCAGGATGG +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVLVLGQ*ATASGW
Trigger: CCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAG...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCCGACTCGAGCTGGGATaGCCAGGCACCGTAGCACTG +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSRLELG*PGTVAL
Trigger: CAGTGCTACGGTGCCTGGGCATCCCAGCTCGAGTCG...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp CAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACTTCAAAGCCCACCCGCCCCAATCACCAGGTaGACCTTCTTCTCCTCGTCT +
Preference number: 4 (lower is better)
Translates to: QEERHWAWLGLLKLQSPPAPITR*TFFSSS
Trigger: AGACGAGGAGAAGAAGGTGCACCTGGTGATTGGGGC...GGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCTCCCAGGGCTCTTCCTaGATGCAGTCAGCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVSQGSS*MQSAVP
Trigger: GGGCACAGCTGACTGCATTCAGGAAGAGCCCTGGGA...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp CATGCTAATTCACGCTGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACTGTGGATCATCTGGGTaGAGACTGCCCAGCCTGGAC +
Preference number: 4 (lower is better)
Translates to: HANSRCAWERPSDGKNRDCGSSG*RLPSLD
Trigger: GTCCAGGCTGGGCAGTCTGCACCCAGATGATCCACA...GTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACAGCGTGAATTAGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACCCTTCCTGGGCAGCCTaGGTCTGTGAAATAGGCAGG +
Preference number: 4 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDPSWAA*VCEIGR
Trigger: CCTGCCTATTTCACAGACCCAGGCTGCCCAGGAAGG...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GGAGCATGGCAGCATTCAGGCAGACATAGGCCCGGAGAAGTAGCTGAGAGTTTTTCCACAGTGAGCCTTTaGAGCCCCAGATGTGTTGGG +
Preference number: 4 (lower is better)
Translates to: GAWQHSGRHRPGEVAESFSTVSL*SPRCVG
Trigger: CCCAACACATCTGGGGCTCCAAAGGCTCACTGTGGA...AAAACTCTCAGCTACTTCTCCGGGCCTATGTCTGCCTGAATGCTGCCATGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGAGGGCTCTTCCTGAATaGAGTCAGCTGTGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: RPSDGKNRDLICCSPVDERALPE*SQLCPG
Trigger: ACCTGGGCACAGCTGACTGCATTCAGGAAGAGCCCT...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp GGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCTTAGGAGCCCTTGGGTaGAGAATCTGCCATCCACCA +
Preference number: 4 (lower is better)
Translates to: GPVMGRTETSFVVVPWMSLGALG*RICHPP
Trigger: TGGTGGATGGCAGATTCTGCACCCAAGGGCTCCTAA...GCTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp CATGCTAATTCACGCTGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACAAAGAGCTCTGGTACTaGGGGGTCCAGCTGCAGTTC +
Preference number: 4 (lower is better)
Translates to: HANSRCAWERPSDGKNRDKELWY*GVQLQF
Trigger: GAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTT...GTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACAGCGTGAATTAGCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GGAGCATGGCAGCATTCAGGCAGACATAGGCCCGGAGAAGTAGCTGAGAGTTTTCTCAAAGTAAGGTGCTaGGAGCTGATGGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: GAWQHSGRHRPGEVAESFLKVRC*ELMALV
Trigger: CACCAAGGCCATCAGCTCCCAGCACCTTACTTTGAG...AAAACTCTCAGCTACTTCTCCGGGCCTATGTCTGCCTGAATGCTGCCATGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp GGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCTGGAAGACCCAGATATaGCCCCTCTGTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: GPVMGRTETSFVVVPWMSWKTQI*PLCPSP
Trigger: TGGAGAAGGACAGAGGGGCCATATCTGGGTCTTCCA...GCTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGTCCATTAGGAGCCCTTaGGTGCAGAATCTGCCATCC +
Preference number: 4 (lower is better)
Translates to: GKGPVMGRTETSFVVVPWSIRSP*VQNLPS
Trigger: GGATGGCAGATTCTGCACCCAAGGGCTCCTAATGGA...CCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGCAGCTGAGGCTGGTGTaGGAGTACCTTGCCATTGCC +
Preference number: 4 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKQLRLV*EYLAIA
Trigger: GGCAATGGCAAGGTACTCCCACACCAGCCTCAGCTG...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp CCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTGGAAGTCACAGCTCTTaGTGCTCAGAGCTTGCCCCA +
Preference number: 4 (lower is better)
Translates to: PLLPRQQNSALLSMTYKTGSHSS*CSELAP
Trigger: TGGGGCAAGCTCTGAGCATCAAGAGCTGTGACTTCC...AGTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCGGAAGTCACAGCTCTTaGTGCTCAGAGCTTGCCCCA +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSGSHSS*CSELAP
Trigger: TGGGGCAAGCTCTGAGCATCAAGAGCTGTGACTTCC...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCAAGGTCACTGAGAGCTaGCCATCTCCACTCAGAGGG +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVKVTES*PSPLRG
Trigger: CCCTCTGAGTGGAGATGGTCAGCTCTCAGTGACCTT...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCTCCTCAAAGTAAGGTaGTGGGAGCTGATGGCCTTG +
Preference number: 4 (lower is better)
Translates to: RPSDGKNRDLICCSPVDELLKVR*WELMAL
Trigger: CAAGGCCATCAGCTCCCAGCACCTTACTTTGAGGAG...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGAGGGCTCTTCCTGAATaGAGTCAGCTGTGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKRALPE*SQLCPG
Trigger: ACCTGGGCACAGCTGACTGCATTCAGGAAGAGCCCT...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCTCAGGATGGGCACGCTaGCCCGACGTTTGTACAACA +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVSGWAR*PDVCTT
Trigger: TGTTGTACAAACGTCGGGGCAGCGTGCCCATCCTGA...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCTCAGGATGGGCACGCTaGCCCGACGTTTGTACAACA +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSSGWAR*PDVCTT
Trigger: TGTTGTACAAACGTCGGGGCAGCGTGCCCATCCTGA...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp CCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTGGCACCGTAGCACTGTaGAAGCAACAGCAGCAGACA +
Preference number: 4 (lower is better)
Translates to: PLLPRQQNSALLSMTYKTGTVAL*KQQQQT
Trigger: TGTCTGCTGCTGTTGCTTGCACAGTGCTACGGTGCC...AGTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTTAGGAGCCCTTGGGTaGAGAATCTGCCATCCACCA +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSLGALG*RICHPP
Trigger: TGGTGGATGGCAGATTCTGCACCCAAGGGCTCCTAA...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp GGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGCAGAAATGTGTGGGTTaGAGCACGGAAGTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: GKGPVMGRTETSFVVVPWQKCVG*STEVQG
Trigger: ACCCTGAACTTCCGTGCTCCAACCCACACATTTCTG...CCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp CATGCTAATTCACGCTGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACGAGACGGTCCAGTGTTaGGCATCTCTTTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: HANSRCAWERPSDGKNRDETVQC*ASLSST
Trigger: AGTGGAGGAAAGAGATGCCCAACACTGGACCGTCTC...GTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACAGCGTGAATTAGCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTCCATTAGGAGCCCTTaGGTGCAGAATCTGCCATCC +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSSIRSP*VQNLPS
Trigger: GGATGGCAGATTCTGCACCCAAGGGCTCCTAATGGA...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGCTTGACTGCTCTGACTaGGACCAGACTGCAGGATCC +
Preference number: 4 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKLDCSD*DQTAGS
Trigger: GGATCCTGCAGTCTGGTCCCAGTCAGAGCAGTCAAG...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp GGAGCATGGCAGCATTCAGGCAGACATAGGCCCGGAGAAGTAGCTGAGAGTTTTTGGCTTGGGTCTTATTaGTCTTGGAAGGTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: GAWQHSGRHRPGEVAESFWLGSY*SWKVAL
Trigger: GAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCA...AAAACTCTCAGCTACTTCTCCGGGCCTATGTCTGCCTGAATGCTGCCATGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCAATCTACTTCCACAGTaGGCCTTTGGAGCCCCAGAT +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSNLLPQ*AFGAPD
Trigger: ATCTGGGGCTCCAAAGGCTCACTGTGGAAGTAGATT...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACCTCCTCGTTGTTTTCTaGTGCGTGGAAGTCACAGCT +
Preference number: 4 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDLLVVF*CVEVTA
Trigger: AGCTGTGACTTCCACGCAGCAGAAAACAACGAGGAG...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTTCTTCTTGAGGGCATaGAACAAGGCGCCCACAACT +
Preference number: 4 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDFFLRA*NKAPTT
Trigger: AGTTGTGGGCGCCTTGTTGCATGCCCTCAAGAAGAA...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACCATCTGGGTGCAGACTaGCCAGCCTGGACAAGGGGC +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYHLGAD*PAWTRG
Trigger: GCCCCTTGTCCAGGCTGGGCAGTCTGCACCCAGATG...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCTCAAAGTAAGGTGCTaGGAGCTGATGGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVLKVRC*ELMALV
Trigger: CACCAAGGCCATCAGCTCCCAGCACCTTACTTTGAG...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGGCACTCCACCCTTTTTaGTCCCCAAGAGAGGAAATT +
Preference number: 4 (lower is better)
Translates to: GKGPVMGRTETSFVVVPWALHPF*SPREEI
Trigger: AATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGTGC...CCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTACCTTCCTGGGCAGCCTaGGTCTGTGAAATAGGCAGG +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVPSWAA*VCEIGR
Trigger: CCTGCCTATTTCACAGACCCAGGCTGCCCAGGAAGG...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp CCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTAACCTGAAGCAAGAGTaGGTAGTGGCCAATGACAGC +
Preference number: 4 (lower is better)
Translates to: PLLPRQQNSALLSMTYKTNLKQE*VVANDS
Trigger: GCTGTCATTGGCCACTACTCACTCTTGCTTCAGGTT...AGTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTTCCCAGGGCTCTTCCTaGATGCAGTCAGCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTSQGSS*MQSAVP
Trigger: GGGCACAGCTGACTGCATTCAGGAAGAGCCCTGGGA...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCCTCGTTGTTTTCTGCTaGGTGGAAGTCACAGCTCTT +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSLVVFC*VEVTAL
Trigger: AAGAGCTGTGACTTCCACGCAGCAGAAAACAACGAG...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTAGGCACCGTAGCACTGTaGAAGCAACAGCAGCAGACA +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVGTVAL*KQQQQT
Trigger: TGTCTGCTGCTGTTGCTTGCACAGTGCTACGGTGCC...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTATTCCCCCTCCTTGACTaGTCTGACTGGGACCAGACT +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVFPLLD*SDWDQT
Trigger: AGTCTGGTCCCAGTCAGAGCAGTCAAGGAGGGGGAA...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp CCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTCGAGGCATTTACTGCTaGAAAGAGCTCTGGTACTGC +
Preference number: 4 (lower is better)
Translates to: PLLPRQQNSALLSMTYKTRGIYC*KELWYC
Trigger: GCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCG...AGTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCCGAGGCATTTACTGCTaGAAAGAGCTCTGGTACTGC +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSRGIYC*KELWYC
Trigger: GCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCG...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp TGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTGTCGGTCTCCCCAAATaGTTTCTTACGACAGGGTGG +
Preference number: 4 (lower is better)
Translates to: CAWERPSDGKNRDLICCSVGLPK*FLTTGW
Trigger: CCACCCTGTCGTAAGAAAGCATTTGGGGAGACCGAC...ACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCCCCAAGAGAGGAAATTaGGAAGATGGCTTGGGTCTT +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSPKRGN*EDGLGL
Trigger: AAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGG...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp GATCTACAGAGTGAGTTCCTGGACCAACAGCACTACATAGAGAAACCCTGTCTCGAGACGGTCCAGTGTTaGGCATCTCTTTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: DLQSEFLDQQHYIEKPCLETVQC*ASLSST
Trigger: AGTGGAGGAAAGAGATGCCCAACACTGGACCGTCTC...GAGACAGGGTTTCTCTATGTAGTGCTGTTGGTCCAGGAACTCACTCTGTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCAAAGCTGTTCTCGGGTaGGGTTTGCTCAAAACAGGA +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSKAVLG*GLLKTG
Trigger: TCCTGTTTTGAGCAAACCCCACCCGAGAACAGCTTT...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGAGTACCTCCTTTTCTTaGAGAGATCCTGCAGGATAC +
Preference number: 4 (lower is better)
Translates to: RPSDGKNRDLICCSPVDESTSFS*RDPAGY
Trigger: GTATCCTGCAGGATCTCTTCAAGAAAAGGAGGTACT...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCCCAGATGTGTTGGGGTaGACTGGAACTGAGTATGTA +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSPDVLG*TGTEYV
Trigger: TACATACTCAGTTCCAGTTCACCCCAACACATCTGG...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp TGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTTCTTTCCTCCACTGCTaGACTCCACCCTTTTTGGTC +
Preference number: 4 (lower is better)
Translates to: CAWERPSDGKNRDLICCSSFLHC*TPPFLV
Trigger: GACCAAAAAGGGTGGAGTGCAGCAGTGGAGGAAAGA...ACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp GATCTACAGAGTGAGTTCCTGGACCAACAGCACTACATAGAGAAACCCTGTCTCTTCTCGGGTGGGGTTTaGTCAAAACAGGAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: DLQSEFLDQQHYIEKPCLFSGGV*SKQEKD
Trigger: GTCCTTCTCCTGTTTTGAGCAAACCCCACCCGAGAA...GAGACAGGGTTTCTCTATGTAGTGCTGTTGGTCCAGGAACTCACTCTGTAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGTTGTTTTCTGCTGCGTaGAAGTCACAGCTCTTGATG +
Preference number: 4 (lower is better)
Translates to: RPSDGKNRDLICCSPVDELFSAA*KSQLLM
Trigger: CATCAAGAGCTGTGACTTCCACGCAGCAGAAAACAA...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGGCACTCCACCCTTTTTaGTCCCCAAGAGAGGAAATT +
Preference number: 4 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKALHPF*SPREEI
Trigger: AATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGTGC...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTATGGAAGACCCAGATATaGCCCCTCTGTCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVWKTQI*PLCPSP
Trigger: TGGAGAAGGACAGAGGGGCCATATCTGGGTCTTCCA...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp GGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCCTTTTCTGTTGGAGTTaGTCAACTCCAACTTCCCAT +
Preference number: 4 (lower is better)
Translates to: GPVMGRTETSFVVVPWMSLFCWS*STPTSH
Trigger: ATGGGAAGTTGGAGTTGACCAACTCCAACAGAAAAG...GCTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCCTGTGCTGCTCTCTTTaGCATCTCGATGATAAGATC +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSLCCSL*HLDDKI
Trigger: GATCTTATCATCGAGATGCCAAAGAGAGCAGCACAG...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTAGAGCCCCAGATGTGTTaGGGTGAACTGGAACTGAGT +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVEPQMC*GELELS
Trigger: ACTCAGTTCCAGTTCACCCCAACACATCTGGGGCTC...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
3UTR CAA 72 bp GTGAATCTAGCTGATTTTTGGCCACTGGTCTGTTGCTaGGTAGGCAGAATTCCCCTCTGGAGCATGTCTAGT +
Preference number: 4 (lower is better)
Translates to: VNLADFWPLVCC*VGRIPLWSMSS
Trigger: ACTAGACATGCTCCAGAGGGGAATTCTGCCTACCAAGCAACAGACCAGTGGCCAAAAATCAGCTAGATTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACGGCAGCCTGGGTCTGTaGAATAGGCAGGACACTCTT +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYGSLGL*NRQDTL
Trigger: AAGAGTGTCCTGCCTATTTCACAGACCCAGGCTGCC...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTAAGGTCACTGAGAGCTaGCCATCTCCACTCAGAGGG +
Preference number: 4 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTKVTES*PSPLRG
Trigger: CCCTCTGAGTGGAGATGGTCAGCTCTCAGTGACCTT...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTACTCCTCGTTGTTTTCTaGTGCGTGGAAGTCACAGCT +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVLLVVF*CVEVTA
Trigger: AGCTGTGACTTCCACGCAGCAGAAAACAACGAGGAG...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTCAACACATATTCTGTaGGTTCAGCCTCGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSSTHIL*VQPRSV
Trigger: TACAGAACGAGGCTGAACGCACAGAATATGTGTTGA...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTATTCTTCTTGAGGGCATaGAACAAGGCGCCCACAACT +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVFFLRA*NKAPTT
Trigger: AGTTGTGGGCGCCTTGTTGCATGCCCTCAAGAAGAA...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACGCCCCAATCACCAGGTaGACCTTCTTCTCCTCGTCT +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYAPITR*TFFSSS
Trigger: AGACGAGGAGAAGAAGGTGCACCTGGTGATTGGGGC...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCTTGAGCATGAACAACTaGTTCTTGCTCCAGAGACCA +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSLSMNN*FLLQRP
Trigger: TGGTCTCTGGAGCAAGAAGCAGTTGTTCATGCTCAA...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp GTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGACACTGGAGTATTACACGGCTCGTCCTTaGCCAGTGAGCCACTGCCTC +
Preference number: 4 (lower is better)
Translates to: VLQILMFVSTTEFWTLEYYTARP*PVSHCL
Trigger: GAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTA...ATACTCCAGTGTCCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCCTTTTCTGTTGGAGTTaGTCAACTCCAACTTCCCAT +
Preference number: 4 (lower is better)
Translates to: RGRWISEFKASVIYRVSSLFCWS*STPTSH
Trigger: ATGGGAAGTTGGAGTTGACCAACTCCAACAGAAAAG...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCCACATCTTTTCTGTTaGAGTTGGTCAACTCCAACT +
Preference number: 4 (lower is better)
Translates to: RPSDGKNRDLICCSPVDEPHLFC*SWSTPT
Trigger: AGTTGGAGTTGACCAACTCCAACAGAAAAGATGTGG...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGTCTGTCTGGAATGCTTaGTACATTTTTCTAGCTGGC +
Preference number: 4 (lower is better)
Translates to: RPSDGKNRDLICCSPVDESVWNA*YIFLAG
Trigger: GCCAGCTAGAAAAATGTACCAAGCATTCCAGACAGA...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTAACTTGTAGTTCTGAGTaGTGTCTTCACAGCGGTCAC +
Preference number: 4 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVTCSSE*CLHSGH
Trigger: GTGACCGCTGTGAAGACATCACTCAGAACTACAAGT...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCTCCCTCTGTCTGGAATaGTTGGTACATTTTTCTAGC +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVSLCLE*LVHFSS
Trigger: GCTAGAAAAATGTACCAAGCATTCCAGACAGAGGGA...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GATCTACAGAGTGAGTTCCTGGACCAACAGCACTACATAGAGAAACCCTGTCTCTTGTTTTCTGCTGCGTaGAAGTCACAGCTCTTGATG +
Preference number: 4 (lower is better)
Translates to: DLQSEFLDQQHYIEKPCLLFSAA*KSQLLM
Trigger: CATCAAGAGCTGTGACTTCCACGCAGCAGAAAACAA...GAGACAGGGTTTCTCTATGTAGTGCTGTTGGTCCAGGAACTCACTCTGTAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp ATAGAGAAACCCTGTCTCAAAAATACCAACCAACCAACCAACCAAATAACCAAATACACGGCTCGTCCTTaGCCAGTGAGCCACTGCCTC +
Preference number: 4 (lower is better)
Translates to: IEKPCLKNTNQPTNQITKYTARP*PVSHCL
Trigger: GAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTA...TTTGGTTATTTGGTTGGTTGGTTGGTTGGTATTTTTGAGACAGGGTTTCTCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp AATGCAAAGTTTTTACTAGCCCACTGTTACCCAGACAACAAAACTCAGCCCTCCCTCGTTGTTTTCTGCTaGGTGGAAGTCACAGCTCTT +
Preference number: 4 (lower is better)
Translates to: NAKFLLAHCYPDNKTQPSLVVFC*VEVTAL
Trigger: AAGAGCTGTGACTTCCACGCAGCAGAAAACAACGAG...GGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGGCTAGTAAAAACTTTGCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTTCTTTCCTCCACTGCTaGACTCCACCCTTTTTGGTC +
Preference number: 4 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTSFLHC*TPPFLV
Trigger: GACCAAAAAGGGTGGAGTGCAGCAGTGGAGGAAAGA...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp GTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCATTGGGAAGATGGCTTaGGTCTTATTGATCTTGGAA +
Preference number: 4 (lower is better)
Translates to: VLGKGPVMGRTETSFVVVIGKMA*VLLILE
Trigger: TTCCAAGATCAATAAGACCCAAGCCATCTTCCCAAT...GACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp GATCTACAGAGTGAGTTCCTGGACCAACAGCACTACATAGAGAAACCCTGTCTCCCACATCTTTTCTGTTaGAGTTGGTCAACTCCAACT +
Preference number: 4 (lower is better)
Translates to: DLQSEFLDQQHYIEKPCLPHLFC*SWSTPT
Trigger: AGTTGGAGTTGACCAACTCCAACAGAAAAGATGTGG...GAGACAGGGTTTCTCTATGTAGTGCTGTTGGTCCAGGAACTCACTCTGTAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGTTCAGTCTTTCTTTTTaGACTTTCTCCAGTACCTCC +
Preference number: 4 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKFSLSF*TFSSTS
Trigger: GGAGGTACTGGAGAAAGTCCAAAAAGAAAGACTGAA...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTGGCTTGGGTCTTATTaGTCTTGGAAGGTTGCTCTC +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYWLGSY*SWKVAL
Trigger: GAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCA...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGGTGAGTAGTGGCCAATaGCAGCATCCACAGGTGTGG +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWVSSGQ*QHPQVW
Trigger: CCACACCTGTGGATGCTGTCATTGGCCACTACTCAC...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACACTTGTAGTTCTGAGTaGTGTCTTCACAGCGGTCAC +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYTCSSE*CLHSGH
Trigger: GTGACCGCTGTGAAGACATCACTCAGAACTACAAGT...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGTTCCCCCTCCTTGACTaGTCTGACTGGGACCAGACT +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWFPLLD*SDWDQT
Trigger: AGTCTGGTCCCAGTCAGAGCAGTCAAGGAGGGGGAA...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATAGAGAAACCCTGTCTCAAAAATACCAACCAACCAACCAACCAAATAACCAAAAAAGAGCTCTGGTACTaGGGGGTCCAGCTGCAGTTC +
Preference number: 4 (lower is better)
Translates to: IEKPCLKNTNQPTNQITKKELWY*GVQLQF
Trigger: GAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTT...TTTGGTTATTTGGTTGGTTGGTTGGTTGGTATTTTTGAGACAGGGTTTCTCTAT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCATCATCTCTGTTCCATaGATTAAAGAGCAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSIISVP*IKEQCE
Trigger: TTCACACTGCTCTTTAATCCATGGAACAGAGATGAT...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGCTTGACTGCTCTGACTaGGACCAGACTGCAGGATCC +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWLDCSD*DQTAGS
Trigger: GGATCCTGCAGTCTGGTCCCAGTCAGAGCAGTCAAG...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTAGAAGGACAGGTTGGTaGATAGTCTCATCACCTGGT +
Preference number: 4 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTRRTGW*IVSSPG
Trigger: ACCAGGTGATGAGACTATCCACCAACCTGTCCTTCT...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR TCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTAGTACCTCCTTTTCTTaGAGAGATCCTGCAGGATAC +
Preference number: 4 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTSTSFS*RDPAGY
Trigger: GTATCCTGCAGGATCTCTTCAAGAAAAGGAGGTACT...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR GCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTTGAGCATGAACAACTaGTTCTTGCTCCAGAGACCA +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYLSMNN*FLLQRP
Trigger: TGGTCTCTGGAGCAAGAAGCAGTTGTTCATGCTCAA...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR TCA 90 bp ATAGAGAAACCCTGTCTCAAAAATACCAACCAACCAACCAACCAAATAACCAAAAACCTGAAGCAAGAGTaGGTAGTGGCCAATGACAGC +
Preference number: 4 (lower is better)
Translates to: IEKPCLKNTNQPTNQITKNLKQE*VVANDS
Trigger: GCTGTCATTGGCCACTACTCACTCTTGCTTCAGGTT...TTTGGTTATTTGGTTGGTTGGTTGGTTGGTATTTTTGAGACAGGGTTTCTCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTATTGGGAAGATGGCTTaGGTCTTATTGATCTTGGAA +
Preference number: 4 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTIGKMA*VLLILE
Trigger: TTCCAAGATCAATAAGACCCAAGCCATCTTCCCAAT...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGCCCAAGAGAGGAAATTaGGAAGATGGCTTGGGTCTT +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWPKRGN*EDGLGL
Trigger: AAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGG...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp AATGCAAAGTTTTTACTAGCCCACTGTTACCCAGACAACAAAACTCAGCCCTCCATCATCTCTGTTCCATaGATTAAAGAGCAGTGTGAA +
Preference number: 4 (lower is better)
Translates to: NAKFLLAHCYPDNKTQPSIISVP*IKEQCE
Trigger: TTCACACTGCTCTTTAATCCATGGAACAGAGATGAT...GGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGGCTAGTAAAAACTTTGCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACCATCTTCCCTCTGTCTaGAATGCTTGGTACATTTTT +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYHLPSV*NAWYIF
Trigger: AAAAATGTACCAAGCATTCCAGACAGAGGGAAGATG...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGTTGCTCTCCCGTTTGTaGAATGAGAGCCACTTTCTT +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWLLSRL*NESHFL
Trigger: AAGAAAGTGGCTCTCATTGCACAAACGGGAGAGCAA...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATAGAGAAACCCTGTCTCAAAAATACCAACCAACCAACCAACCAAATAACCAAATTGCTCTCCCGTTTGTaGAATGAGAGCCACTTTCTT +
Preference number: 4 (lower is better)
Translates to: IEKPCLKNTNQPTNQITKLLSRL*NESHFL
Trigger: AAGAAAGTGGCTCTCATTGCACAAACGGGAGAGCAA...TTTGGTTATTTGGTTGGTTGGTTGGTTGGTATTTTTGAGACAGGGTTTCTCTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CCA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACGTACATTTTTCTAGCTaGCCCTTCTTCATTCTTCAA +
Preference number: 4 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYVHFSS*PFFILQ
Trigger: TTGAAGAATGAAGAAGGGCCAGCTAGAAAAATGTAC...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR GCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGTCAACACATATTCTGTaGGTTCAGCCTCGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWSTHIL*VQPRSV
Trigger: TACAGAACGAGGCTGAACGCACAGAATATGTGTTGA...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CCA 90 bp ATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGTTCAGTCTTTCTTTTTaGACTTTCTCCAGTACCTCC +
Preference number: 4 (lower is better)
Translates to: ISSRVLQILMFVSTTEFWFSLSF*TFSSTS
Trigger: GGAGGTACTGGAGAAAGTCCAAAAAGAAAGACTGAA...CCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
3UTR CAA 72 bp TTTAGGGAATTTCTCAGTCAAACCACCACAGCTCATTaGTTAGCTTTGTCCACTTTATTAAGAAGATTTGTT +
Preference number: 4 (lower is better)
Translates to: FREFLSQTTTAH*LALSTLLRRFV
Trigger: AACAAATCTTCTTAATAAAGTGGACAAAGCTAACAAATGAGCTGTGGTGGTTTGACTGAGAAATTCCCTAAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CCA 90 bp ACAGCAGCAGACACCCACGCCTGGGTCTCATACACGGCTCGTCCTTaGCCAGTGAGCCACTGCCTCAGGATGGGCACGCTGCCCCGACGT +
Preference number: 5 (lower is better)
Translates to: TAADTHAWVSYTARP*PVSHCLRMGTLPRR
Trigger: ACGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTATGAGACCCAGGCGTGGGTGTCTGCTGCTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS TCA 90 bp CAGACACCCACGCCTGGGTCTCATACACGGCTCGTCCTTGGCCAGTaGGCCACTGCCTCAGGATGGGCACGCTGCCCCGACGTTTGTACA +
Preference number: 5 (lower is better)
Translates to: QTPTPGSHTRLVLGQ*ATASGWARCPDVCT
Trigger: TGTACAAACGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTATGAGACCCAGGCGTGGGTGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 90 bp GCCTGGGTCTGTGAAATAGGCAGGACACTCTTCTTCTTGAGGGCATaGAACAAGGCGCCCACAACTCGGGCCACGTGTGCAGGCTGGTTC +
Preference number: 5 (lower is better)
Translates to: AWVCEIGRTLFFLRA*NKAPTTRATCAGWF
Trigger: GAACCAGCCTGCACACGTGGCCCGAGTTGTGGGCGCCTTGTTGCATGCCCTCAAGAAGAAGAGTGTCCTGCCTATTTCACAGACCCAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 90 bp GAGGCATTTACTGCTGCAAAGAGCTCTGGTACTGCGGGGTCCAGCTaGAGTTCCCCCTCCTTGACTGCTCTGACTGGGACCAGACTGCAG +
Preference number: 5 (lower is better)
Translates to: EAFTAAKSSGTAGSS*SSPSLTALTGTRLQ
Trigger: CTGCAGTCTGGTCCCAGTCAGAGCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 90 bp CCAGACCACACACGAGGCATTTACTGCTGCAAAGAGCTCTGGTACTaGGGGGTCCAGCTGCAGTTCCCCCTCCTTGACTGCTCTGACTGG +
Preference number: 5 (lower is better)
Translates to: PDHTRGIYCCKELWY*GVQLQFPLLDCSDW
Trigger: CCAGTCAGAGCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGTGTGGTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 90 bp CCCATCCTCACAGCACTTCCAGACCACACACGAGGCATTTACTGCTaGAAAGAGCTCTGGTACTGCGGGGTCCAGCTGCAGTTCCCCCTC +
Preference number: 5 (lower is better)
Translates to: PILTALPDHTRGIYC*KELWYCGVQLQFPL
Trigger: GAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGTGTGGTCTGGAAGTGCTGTGAGGATGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 90 bp CTTCCCATCCTCACAGCACTTCCAGACCACACACGAGGCATTTACTaGTGCAAAGAGCTCTGGTACTGCGGGGTCCAGCTGCAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: LPILTALPDHTRGIY*CKELWYCGVQLQFP
Trigger: GGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGTGTGGTCTGGAAGTGCTGTGAGGATGGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 90 bp GCACTTCCAGACCACACACGAGGCATTTACTGCTGCAAAGAGCTCTaGTACTGCGGGGTCCAGCTGCAGTTCCCCCTCCTTGACTGCTCT +
Preference number: 5 (lower is better)
Translates to: ALPDHTRGIYCCKEL*YCGVQLQFPLLDCS
Trigger: AGAGCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGTGTGGTCTGGAAGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp CAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACTTCAAAGCCCACCCATACACGGCTCGTCCTaGGCCAGTGAGCCACTGCCT +
Preference number: 5 (lower is better)
Translates to: QEERHWAWLGLLKLQSPPIHGSS*ASEPLP
Trigger: AGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTAT...GGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS GCA 90 bp TTCCTGGGCAAAGCAGCTGAGGCTGGTGTGGGAGTACCTTGCCATTaGCGTGACTCGGAGAAAGCTGTTCTCGGGTGGGGTTTGCTCAAA +
Preference number: 5 (lower is better)
Translates to: FLGKAAEAGVGVPCH*RDSEKAVLGWGLLK
Trigger: TTTGAGCAAACCCCACCCGAGAACAGCTTTCTCCGAGTCACGGCAATGGCAAGGTACTCCCACACCAGCCTCAGCTGCTTTGCCCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CCA 90 bp ACGCTGCCCCGACGTTTGTACAACAAGGCACCTTCCTGGGCAGCCTaGGTCTGTGAAATAGGCAGGACACTCTTCTTCTTGAGGGCATGC +
Preference number: 5 (lower is better)
Translates to: TLPRRLYNKAPSWAA*VCEIGRTLFFLRAC
Trigger: GCATGCCCTCAAGAAGAAGAGTGTCCTGCCTATTTCACAGACCCAGGCTGCCCAGGAAGGTGCCTTGTTGTACAAACGTCGGGGCAGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 90 bp GTGCTGGGAGCTGATGGCCTTGGTGTAGTGCTCCTCGTTGTTTTCTaGTGCGTGGAAGTCACAGCTCTTGATGCTCAGAGCTTGCCCCAT +
Preference number: 5 (lower is better)
Translates to: VLGADGLGVVLLVVF*CVEVTALDAQSLPH
Trigger: ATGGGGCAAGCTCTGAGCATCAAGAGCTGTGACTTCCACGCAGCAGAAAACAACGAGGAGCACTACACCAAGGCCATCAGCTCCCAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 90 bp CCAATGACAGCATCCACAGGTGTGGTCACAGAGACGGTCCAGTGTTaGGCATCTCTTTCCTCCACTGCTGCACTCCACCCTTTTTGGTCC +
Preference number: 5 (lower is better)
Translates to: PMTASTGVVTETVQC*ASLSSTAALHPFWS
Trigger: GGACCAAAAAGGGTGGAGTGCAGCAGTGGAGGAAAGAGATGCCCAACACTGGACCGTCTCTGTGACCACACCTGTGGATGCTGTCATTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp CAGGAAGAGAGACACTGGGCCTGGCTTGGGCTTTTGAAACTTCAAAGCCCACCCAGAGACGGTCCAGTGTaGGGCATCTCTTTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: QEERHWAWLGLLKLQSPPRDGPV*GISFLH
Trigger: GTGGAGGAAAGAGATGCCCAACACTGGACCGTCTCT...GGGTGGGCTTTGAAGTTTCAAAAGCCCAAGCCAGGCCCAGTGTCTCTCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp GGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCACGCTGCCCCGACGTTaGTACAACAAGGCACCTTCC +
Preference number: 5 (lower is better)
Translates to: GPVMGRTETSFVVVPWMSTLPRR*YNKAPS
Trigger: GGAAGGTGCCTTGTTGTACAAACGTCGGGGCAGCGT...GCTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS TCA 90 bp CCGACGTTTGTACAACAAGGCACCTTCCTGGGCAGCCTGGGTCTGTaGAATAGGCAGGACACTCTTCTTCTTGAGGGCATGCAACAAGGC +
Preference number: 5 (lower is better)
Translates to: PTFVQQGTFLGSLGL*NRQDTLLLEGMQQG
Trigger: GCCTTGTTGCATGCCCTCAAGAAGAAGAGTGTCCTGCCTATTTCACAGACCCAGGCTGCCCAGGAAGGTGCCTTGTTGTACAAACGTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS TCA 90 bp ATTGTAGTACTCATCCACCAGCAGGCTCCCAACTGTACCTTGGGCTaGATCAAATGTGGTAACGACTCGAGCTGGGATGCCCAGGCACCG +
Preference number: 5 (lower is better)
Translates to: IVVLIHQQAPNCTLG*IKCGNDSSWDAQAP
Trigger: CGGTGCCTGGGCATCCCAGCTCGAGTCGTTACCACATTTGATTCAGCCCAAGGTACAGTTGGGAGCCTGCTGGTGGATGAGTACTACAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCACGCTGCCCCGACGTTaGTACAACAAGGCACCTTCC +
Preference number: 5 (lower is better)
Translates to: RGRWISEFKASVIYRVSSTLPRR*YNKAPS
Trigger: GGAAGGTGCCTTGTTGTACAAACGTCGGGGCAGCGT...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS GCA 90 bp CTTGCCATTGCCGTGACTCGGAGAAAGCTGTTCTCGGGTGGGGTTTaGTCAAAACAGGAGAAGGACAGGTTGGTGGATAGTCTCATCACC +
Preference number: 5 (lower is better)
Translates to: LAIAVTRRKLFSGGV*SKQEKDRLVDSLIT
Trigger: GGTGATGAGACTATCCACCAACCTGTCCTTCTCCTGTTTTGAGCAAACCCCACCCGAGAACAGCTTTCTCCGAGTCACGGCAATGGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp TGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTATACACGGCTCGTCCTaGGCCAGTGAGCCACTGCCT +
Preference number: 5 (lower is better)
Translates to: CAWERPSDGKNRDLICCSIHGSS*ASEPLP
Trigger: AGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTAT...ACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CCA 90 bp TGCAATGAGAGCCACTTTCTTCAGGGCAGACAGAAATGTGTGGGTTaGAGCACGGAAGTTCAGGGTGATAGTGAAGGACTGTCCCCTCCT +
Preference number: 5 (lower is better)
Translates to: CNESHFLQGRQKCVG*STEVQGDSEGLSPP
Trigger: AGGAGGGGACAGTCCTTCACTATCACCCTGAACTTCCGTGCTCCAACCCACACATTTCTGTCTGCCCTGAAGAAAGTGGCTCTCATTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp GGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGTGCACTCCACCCTTTTaGGTCCCCAAGAGAGGAAAT +
Preference number: 5 (lower is better)
Translates to: GKGPVMGRTETSFVVVPWCTPPF*VPKRGN
Trigger: ATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGTGCA...CCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACAGGACACTCTTCTTCTaGAGGGCATGCAACAAGGCG +
Preference number: 5 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDRTLFF*RACNKA
Trigger: CGCCTTGTTGCATGCCCTCAAGAAGAAGAGTGTCCT...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCAGGACACTCTTCTTCTaGAGGGCATGCAACAAGGCG +
Preference number: 5 (lower is better)
Translates to: RGRWISEFKASVIYRVSSRTLFF*RACNKA
Trigger: CGCCTTGTTGCATGCCCTCAAGAAGAAGAGTGTCCT...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp AGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCGTTCTCGGGTGGGGTTaGCTCAAAACAGGAGAAGGA +
Preference number: 5 (lower is better)
Translates to: RGRWISEFKASVIYRVSSVLGWG*LKTGEG
Trigger: TCCTTCTCCTGTTTTGAGCAAACCCCACCCGAGAAC...GGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGATCCACCTGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCTTCCACAGTGAGCCTTaGGAGCCCCAGATGTGTTGG +
Preference number: 5 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSFHSEP*EPQMCW
Trigger: CCAACACATCTGGGGCTCCAAAGGCTCACTGTGGAA...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS TCA 90 bp ACCTTCTTCTCCTCGTCTGTGGGGTTAATCAAGGTCACTGAGAGCTaGCCATCTCCACTCAGAGGGATGGAGCTAGATGCTTCGAAGAAC +
Preference number: 5 (lower is better)
Translates to: TFFSSSVGLIKVTES*PSPLRGMELDASKN
Trigger: GTTCTTCGAAGCATCTAGCTCCATCCCTCTGAGTGGAGATGGTCAGCTCTCAGTGACCTTGATTAACCCCACAGACGAGGAGAAGAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 90 bp CTCCACTGCTGCACTCCACCCTTTTTGGTCCCCAAGAGAGGAAATTaGGAAGATGGCTTGGGTCTTATTGATCTTGGAAGGTTGCTCTCC +
Preference number: 5 (lower is better)
Translates to: LHCCTPPFLVPKRGN*EDGLGLIDLGRLLS
Trigger: GGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGTGCAGCAGTGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp GGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGCCATCCACCATAACCTaGGGACAAATCAGGTCTGTT +
Preference number: 5 (lower is better)
Translates to: GKGPVMGRTETSFVVVPWPSTIT*GQIRSV
Trigger: AACAGACCTGATTTGTCCCAAGGTTATGGTGGATGG...CCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp GGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGCTTGGTGCTGATGCAGTaGCCCACATCTTTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: GPVMGRTETSFVVVPWMSLVLMQ*PTSFLL
Trigger: CAACAGAAAAGATGTGGGCAACTGCATCAGCACCAA...GCTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS TCA 90 bp ATTGTTTCTTTCCTGAAACCTGAAGCAAGAGTGAGTAGTGGCCAATaGCAGCATCCACAGGTGTGGTCACAGAGACGGTCCAGTGTTGGG +
Preference number: 5 (lower is better)
Translates to: IVSFLKPEARVSSGQ*QHPQVWSQRRSSVG
Trigger: CCCAACACTGGACCGTCTCTGTGACCACACCTGTGGATGCTGTCATTGGCCACTACTCACTCTTGCTTCAGGTTTCAGGAAAGAAACAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 90 bp CCTTGGGACAAATCAGGTCTGTTCATCCAGCATTCTACAGACGTTTaGAAGACCCAGATATGGCCCCTCTGTCCTTCTCCATTCTGGAGT +
Preference number: 5 (lower is better)
Translates to: PWDKSGLFIQHSTDV*KTQIWPLCPSPFWS
Trigger: ACTCCAGAATGGAGAAGGACAGAGGGGCCATATCTGGGTCTTCCAAACGTCTGTAGAATGCTGGATGAACAGACCTGATTTGTCCCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp GATCTACAGAGTGAGTTCCTGGACCAACAGCACTACATAGAGAAACCCTGTCTCATGAACAACTGCTTCTaGCTCCAGAGACCAGCAGCG +
Preference number: 5 (lower is better)
Translates to: DLQSEFLDQQHYIEKPCLMNNCF*LQRPAA
Trigger: CGCTGCTGGTCTCTGGAGCAAGAAGCAGTTGTTCAT...GAGACAGGGTTTCTCTATGTAGTGCTGTTGGTCCAGGAACTCACTCTGTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CCA 90 bp CTCCACCCTTTTTGGTCCCCAAGAGAGGAAATTGGGAAGATGGCTTaGGTCTTATTGATCTTGGAAGGTTGCTCTCCCGTTTGTGCAATG +
Preference number: 5 (lower is better)
Translates to: LHPFWSPREEIGKMA*VLLILEGCSPVCAM
Trigger: CATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAAAGGGTGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp GGAGCATGGCAGCATTCAGGCAGACATAGGCCCGGAGAAGTAGCTGAGAGTTTTAATTGGGAAGATGGCTaGGGTCTTATTGATCTTGGA +
Preference number: 5 (lower is better)
Translates to: GAWQHSGRHRPGEVAESFNWEDG*GLIDLG
Trigger: TCCAAGATCAATAAGACCCAAGCCATCTTCCCAATT...AAAACTCTCAGCTACTTCTCCGGGCCTATGTCTGCCTGAATGCTGCCATGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp AGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTCCCGTGGATGAGAAAGAGCAGTGTGAATaGGCCCAAGGGGTATTGTTT +
Preference number: 5 (lower is better)
Translates to: RPSDGKNRDLICCSPVDEKEQCE*AQGVLF
Trigger: AAACAATACCCCTTGGGCCAATTCACACTGCTCTTT...CTCATCCACGGGACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGCCCACATCTTTTCTGTaGGAGTTGGTCAACTCCAAC +
Preference number: 5 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKPTSFL*ELVNSN
Trigger: GTTGGAGTTGACCAACTCCAACAGAAAAGATGTGGG...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp TGGGCTTTTGAAACTTCAAAGCCCACCCACCAGCAACACACTTCCTCCAACAAGAGTCTCATCACCTGGTaGGGTTTGAGCATGAACAAC +
Preference number: 5 (lower is better)
Translates to: WAFETSKPTHQQHTSSNKSLITW*GLSMNN
Trigger: GTTGTTCATGCTCAAACCCAACCAGGTGATGAGACT...CTTGTTGGAGGAAGTGTGTTGCTGGTGGGTGGGCTTTGAAGTTTCAAAAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp CCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACTATGGCTTGGGTCTTATaGATCTTGGAAGGTTGCTCT +
Preference number: 5 (lower is better)
Translates to: PLLPRQQNSALLSMTYKTMAWVL*ILEGCS
Trigger: AGAGCAACCTTCCAAGATCAATAAGACCCAAGCCAT...AGTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp ATCTCTGAGTTCAAGGCCAGTGTGATCTACAGAGTGAGTTCCTGGACCAACAGCATGGCTTGGGTCTTATaGATCTTGGAAGGTTGCTCT +
Preference number: 5 (lower is better)
Translates to: ISEFKASVIYRVSSWTNSMAWVL*ILEGCS
Trigger: AGAGCAACCTTCCAAGATCAATAAGACCCAAGCCAT...GCTGTTGGTCCAGGAACTCACTCTGTAGATCACACTGGCCTTGAACTCAGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACAGAGACGGTCCAGTGTaGGGCATCTCTTTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYRDGPV*GISFLH
Trigger: GTGGAGGAAAGAGATGCCCAACACTGGACCGTCTCT...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp CCCACTGTTACCCAGACAACAAAACTCAGCCCTCCTGAGCATGACGTACAAGACCAGTCTTTCACTTGCTaGTCCATACTCAGTAACTTC +
Preference number: 5 (lower is better)
Translates to: PTVTQTTKLSPPEHDVQDQSFTC*SILSNF
Trigger: GAAGTTACTGAGTATGGACAAGCAAGTGAAAGACTG...GTCTTGTACGTCATGCTCAGGAGGGCTGAGTTTTGTTGTCTGGGTAACAGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp TGTGCTTGGGAAAGGCCCAGTGATGGGAAGAACAGAGACCTCATTTGTTGTAGTAGAGAGTTACCCTGGTaGGGTTTGAGCATGAACAAC +
Preference number: 5 (lower is better)
Translates to: CAWERPSDGKNRDLICCSRELPW*GLSMNN
Trigger: GTTGTTCATGCTCAAACCCAACCAGGGTAACTCTCT...ACTACAACAAATGAGGTCTCTGTTCTTCCCATCACTGGGCCTTTCCCAAGCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp ACTAATGCAAAGTTTTTACTAGCCCACTGTTACCCAGACAACAAAACTCAGCCCATGAACAACTGCTTCTaGCTCCAGAGACCAGCAGCG +
Preference number: 5 (lower is better)
Translates to: TNAKFLLAHCYPDNKTQPMNNCF*LQRPAA
Trigger: CGCTGCTGGTCTCTGGAGCAAGAAGCAGTTGTTCAT...GGGCTGAGTTTTGTTGTCTGGGTAACAGTGGGCTAGTAAAAACTTTGCATTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp ACTAATGCAAAGTTTTTACTAGCCCACTGTTACCCAGACAACAAAACTCAGCCCAGAGAGAAGGGACCCTaGTGCATCTTCCCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: TNAKFLLAHCYPDNKTQPREKGP*CIFPLS
Trigger: AGACAGAGGGAAGATGCACAAGGGTCCCTTCTCTCT...GGGCTGAGTTTTGTTGTCTGGGTAACAGTGGGCTAGTAAAAACTTTGCATTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp TCTAGAAGATCATATGTTGGAAAGCAGGGTAAAGCTGCAGTGGGGTGTGGTGTACAGTCTTTCACTTGCTaGTCCATACTCAGTAACTTC +
Preference number: 5 (lower is better)
Translates to: SRRSYVGKQGKAAVGCGVQSFTC*SILSNF
Trigger: GAAGTTACTGAGTATGGACAAGCAAGTGAAAGACTG...TACACCACACCCCACTGCAGCTTTACCCTGCTTTCCAACATATGATCTTCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTCCATCCACCATAACCTaGGGACAAATCAGGTCTGTT +
Preference number: 5 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTPSTIT*GQIRSV
Trigger: AACAGACCTGATTTGTCCCAAGGTTATGGTGGATGG...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS GCA 90 bp TTCTTTTTGGACTTTCTCCAGTACCTCCTTTTCTTGAAGAGATCCTaGAGGATACTTGTAGTTCTGAGTGATGTCTTCACAGCGGTCACT +
Preference number: 5 (lower is better)
Translates to: FFLDFLQYLLFLKRS*RILVVLSDVFTAVT
Trigger: AGTGACCGCTGTGAAGACATCACTCAGAACTACAAGTATCCTGCAGGATCTCTTCAAGAAAAGGAGGTACTGGAGAAAGTCCAAAAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp AAAATACGAGGAACTGTACTAATGGACCTCAGCATTAGAAGGCTGAGAACCACTAAAGAGCAGTGTGAATaGGCCCAAGGGGTATTGTTT +
Preference number: 5 (lower is better)
Translates to: KIRGTVLMDLSIRRLRTTKEQCE*AQGVLF
Trigger: AAACAATACCCCTTGGGCCAATTCACACTGCTCTTT...AGTGGTTCTCAGCCTTCTAATGCTGAGGTCCATTAGTACAGTTCCTCGTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS-3UTR CAA 90 bp ACTAATGCAAAGTTTTTACTAGCCCACTGTTACCCAGACAACAAAACTCAGCCCCTCTGTCTGGAATGCTaGGTACATTTTTCTAGCTGG +
Preference number: 5 (lower is better)
Translates to: TNAKFLLAHCYPDNKTQPLCLEC*VHFSSW
Trigger: CCAGCTAGAAAAATGTACCAAGCATTCCAGACAGAG...GGGCTGAGTTTTGTTGTCTGGGTAACAGTGGGCTAGTAAAAACTTTGCATTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp CCCATGCAGTGGGATTTCGTCAAGAGTTTTGCAAATTCTGATGTTTGTGTCTACAATTGGGAAGATGGCTaGGGTCTTATTGATCTTGGA +
Preference number: 5 (lower is better)
Translates to: PMQWDFVKSFANSDVCVYNWEDG*GLIDLG
Trigger: TCCAAGATCAATAAGACCCAAGCCATCTTCCCAATT...GTAGACACAAACATCAGAATTTGCAAAACTCTTGACGAAATCCCACTGCATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp GTTTTGCAAATTCTGATGTTTGTGTCTACTACGGAGTTTTGGACACTGGAGTATCCCACATCTTTTCTGTaGGAGTTGGTCAACTCCAAC +
Preference number: 5 (lower is better)
Translates to: VLQILMFVSTTEFWTLEYPTSFL*ELVNSN
Trigger: GTTGGAGTTGACCAACTCCAACAGAAAAGATGTGGG...ATACTCCAGTGTCCAAAACTCCGTAGTAGACACAAACATCAGAATTTGCAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS-3UTR CAA 90 bp ATAGAGAAACCCTGTCTCAAAAATACCAACCAACCAACCAACCAAATAACCAAATTGGTGCTGATGCAGTaGCCCACATCTTTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: IEKPCLKNTNQPTNQITKLVLMQ*PTSFLL
Trigger: CAACAGAAAAGATGTGGGCAACTGCATCAGCACCAA...TTTGGTTATTTGGTTGGTTGGTTGGTTGGTATTTTTGAGACAGGGTTTCTCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS TCA 72 bp ACGCCTGGGTCTCATACACGGCTCGTCCTTGGCCAGTaGGCCACTGCCTCAGGATGGGCACGCTGCCCCGAC +
Preference number: 6 (lower is better)
Translates to: TPGSHTRLVLGQ*ATASGWARCPD
Trigger: GTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTATGAGACCCAGGCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp AACAGCAGCAGACACCCACGCCTGGGTCTCATACACGGCTCGTCCTaGGCCAGTGAGCCACTGCCTCAGGATGGGCACGCTGCCCCGACG +
Preference number: 6 (lower is better)
Translates to: NSSRHPRLGLIHGSS*ASEPLPQDGHAAPT
Trigger: CGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTATGAGACCCAGGCGTGGGTGTCTGCTGCTGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp GACACCCACGCCTGGGTCTCATACACGGCTCGTCCTTaGCCAGTGAGCCACTGCCTCAGGATGGGCACGCTG +
Preference number: 6 (lower is better)
Translates to: DTHAWVSYTARP*PVSHCLRMGTL
Trigger: CAGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTATGAGACCCAGGCGTGGGTGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp AGCCACTGCCTCAGGATGGGCACGCTGCCCCGACGTTaGTACAACAAGGCACCTTCCTGGGCAGCCTGGGTC +
Preference number: 6 (lower is better)
Translates to: SHCLRMGTLPRR*YNKAPSWAAWV
Trigger: GACCCAGGCTGCCCAGGAAGGTGCCTTGTTGTACAAACGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp AGACACCCACGCCTGGGTCTCATACACGGCTCGTCCTaGGCCAGTGAGCCACTGCCTCAGGATGGGCACGCT +
Preference number: 6 (lower is better)
Translates to: RHPRLGLIHGSS*ASEPLPQDGHA
Trigger: AGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCAAGGACGAGCCGTGTATGAGACCCAGGCGTGGGTGTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp TACTGCGGGGTCCAGCTGCAGTTCCCCCTCCTTGACTaGTCTGACTGGGACCAGACTGCAGGATCCCAGGAC +
Preference number: 6 (lower is better)
Translates to: YCGVQLQFPLLD*SDWDQTAGSQD
Trigger: GTCCTGGGATCCTGCAGTCTGGTCCCAGTCAGAGCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp GCAAAGAGCTCTGGTACTGCGGGGTCCAGCTGCAGTTCCCCCTCCTaGACTGCTCTGACTGGGACCAGACTGCAGGATCCCAGGACTCCA +
Preference number: 6 (lower is better)
Translates to: AKSSGTAGSSCSSPS*TALTGTRLQDPRTP
Trigger: TGGAGTCCTGGGATCCTGCAGTCTGGTCCCAGTCAGAGCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp ACTGCTGCAAAGAGCTCTGGTACTGCGGGGTCCAGCTaGAGTTCCCCCTCCTTGACTGCTCTGACTGGGACC +
Preference number: 6 (lower is better)
Translates to: TAAKSSGTAGSS*SSPSLTALTGT
Trigger: GGTCCCAGTCAGAGCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp TGGCCAGTGAGCCACTGCCTCAGGATGGGCACGCTGCCCCGACGTTaGTACAACAAGGCACCTTCCTGGGCAGCCTGGGTCTGTGAAATA +
Preference number: 6 (lower is better)
Translates to: WPVSHCLRMGTLPRR*YNKAPSWAAWVCEI
Trigger: TATTTCACAGACCCAGGCTGCCCAGGAAGGTGCCTTGTTGTACAAACGTCGGGGCAGCGTGCCCATCCTGAGGCAGTGGCTCACTGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp GGCATGCAACAAGGCGCCCACAACTCGGGCCACGTGTaGAGGCTGGTTCCAGTCTTTCACTTGCTTGTCCAT +
Preference number: 6 (lower is better)
Translates to: GMQQGAHNSGHV*RLVPVFHLLVH
Trigger: ATGGACAAGCAAGTGAAAGACTGGAACCAGCCTGCACACGTGGCCCGAGTTGTGGGCGCCTTGTTGCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp ACACGAGGCATTTACTGCTGCAAAGAGCTCTGGTACTaGGGGGTCCAGCTGCAGTTCCCCCTCCTTGACTGC +
Preference number: 6 (lower is better)
Translates to: TRGIYCCKELWY*GVQLQFPLLDC
Trigger: GCAGTCAAGGAGGGGGAACTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp GCAGACTGCCCAGCCTGGACAAGGGGCTTCCTGTCCTaGACTCTGTCGGTCTCCCCAAATGCTTTCTTACGA +
Preference number: 6 (lower is better)
Translates to: ADCPAWTRGFLS*TLSVSPNAFLR
Trigger: TCGTAAGAAAGCATTTGGGGAGACCGACAGAGTGCAGGACAGGAAGCCCCTTGTCCAGGCTGGGCAGTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CCA 72 bp GCATCCACAGGTGTGGTCACAGAGACGGTCCAGTGTTaGGCATCTCTTTCCTCCACTGCTGCACTCCACCCT +
Preference number: 6 (lower is better)
Translates to: ASTGVVTETVQC*ASLSSTAALHP
Trigger: AGGGTGGAGTGCAGCAGTGGAGGAAAGAGATGCCCAACACTGGACCGTCTCTGTGACCACACCTGTGGATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp ACAGCACTTCCAGACCACACACGAGGCATTTACTGCTaGAAAGAGCTCTGGTACTGCGGGGTCCAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: TALPDHTRGIYC*KELWYCGVQLQ
Trigger: CTGCAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGTGTGGTCTGGAAGTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp CTCACAGCACTTCCAGACCACACACGAGGCATTTACTaGTGCAAAGAGCTCTGGTACTGCGGGGTCCAGCTG +
Preference number: 6 (lower is better)
Translates to: LTALPDHTRGIY*CKELWYCGVQL
Trigger: CAGCTGGACCCCGCAGTACCAGAGCTCTTTGCAGCAGTAAATGCCTCGTGTGTGGTCTGGAAGTGCTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp GCAGGATCCCAGGACTCCAGCTCCATTAGGAGCCCTTaGGTGCAGAATCTGCCATCCACCATAACCTTGGGA +
Preference number: 6 (lower is better)
Translates to: AGSQDSSSIRSP*VQNLPSTITLG
Trigger: TCCCAAGGTTATGGTGGATGGCAGATTCTGCACCCAAGGGCTCCTAATGGAGCTGGAGTCCTGGGATCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp GCCCAAGAAAGAACCATATGTGTGCAGGGTGTCCGCTaGGGCCAGAGAGAGTTACCCTGGTTGGGTTTGAGC +
Preference number: 6 (lower is better)
Translates to: AQERTICVQGVR*GQRELPWLGLS
Trigger: GCTCAAACCCAACCAGGGTAACTCTCTCTGGCCCCAGCGGACACCCTGCACACATATGGTTCTTTCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CAA 72 bp CAGGGTGTCCGCTGGGGCCAGAGAGAGTTACCCTGGTaGGGTTTGAGCATGAACAACTGCTTCTTGCTCCAG +
Preference number: 6 (lower is better)
Translates to: QGVRWGQRELPW*GLSMNNCFLLQ
Trigger: CTGGAGCAAGAAGCAGTTGTTCATGCTCAAACCCAACCAGGGTAACTCTCTCTGGCCCCAGCGGACACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CAA 90 bp GCCAATGACAGCATCCACAGGTGTGGTCACAGAGACGGTCCAGTGTaGGGCATCTCTTTCCTCCACTGCTGCACTCCACCCTTTTTGGTC +
Preference number: 6 (lower is better)
Translates to: ANDSIHRCGHRDGPV*GISFLHCCTPPFLV
Trigger: GACCAAAAAGGGTGGAGTGCAGCAGTGGAGGAAAGAGATGCCCAACACTGGACCGTCTCTGTGACCACACCTGTGGATGCTGTCATTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS TCA 72 bp CTCATCCACCAGCAGGCTCCCAACTGTACCTTGGGCTaGATCAAATGTGGTAACGACTCGAGCTGGGATGCC +
Preference number: 6 (lower is better)
Translates to: LIHQQAPNCTLG*IKCGNDSSWDA
Trigger: GGCATCCCAGCTCGAGTCGTTACCACATTTGATTCAGCCCAAGGTACAGTTGGGAGCCTGCTGGTGGATGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp TGTGAAATAGGCAGGACACTCTTCTTCTTGAGGGCATaGAACAAGGCGCCCACAACTCGGGCCACGTGTGCA +
Preference number: 6 (lower is better)
Translates to: CEIGRTLFFLRA*NKAPTTRATCA
Trigger: TGCACACGTGGCCCGAGTTGTGGGCGCCTTGTTGCATGCCCTCAAGAAGAAGAGTGTCCTGCCTATTTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp GTCCGCTGGGGCCAGAGAGAGTTACCCTGGTTGGGTTaGAGCATGAACAACTGCTTCTTGCTCCAGAGACCA +
Preference number: 6 (lower is better)
Translates to: VRWGQRELPWLG*SMNNCFLLQRP
Trigger: TGGTCTCTGGAGCAAGAAGCAGTTGTTCATGCTCAAACCCAACCAGGGTAACTCTCTCTGGCCCCAGCGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS TCA 72 bp GTACAACAAGGCACCTTCCTGGGCAGCCTGGGTCTGTaGAATAGGCAGGACACTCTTCTTCTTGAGGGCATG +
Preference number: 6 (lower is better)
Translates to: VQQGTFLGSLGL*NRQDTLLLEGM
Trigger: CATGCCCTCAAGAAGAAGAGTGTCCTGCCTATTTCACAGACCCAGGCTGCCCAGGAAGGTGCCTTGTTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp GCTGATGGCCTTGGTGTAGTGCTCCTCGTTGTTTTCTaGTGCGTGGAAGTCACAGCTCTTGATGCTCAGAGC +
Preference number: 6 (lower is better)
Translates to: ADGLGVVLLVVF*CVEVTALDAQS
Trigger: GCTCTGAGCATCAAGAGCTGTGACTTCCACGCAGCAGAAAACAACGAGGAGCACTACACCAAGGCCATCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp GGGCTTCCTGTCCTGCACTCTGTCGGTCTCCCCAAATaGTTTCTTACGACAGGGTGGGCTGTGTACTTATCT +
Preference number: 6 (lower is better)
Translates to: GLPVLHSVGLPK*FLTTGWAVYLS
Trigger: AGATAAGTACACAGCCCACCCTGTCGTAAGAAAGCATTTGGGGAGACCGACAGAGTGCAGGACAGGAAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS GCA 72 bp GCCGTGACTCGGAGAAAGCTGTTCTCGGGTGGGGTTTaGTCAAAACAGGAGAAGGACAGGTTGGTGGATAGT +
Preference number: 6 (lower is better)
Translates to: AVTRRKLFSGGV*SKQEKDRLVDS
Trigger: ACTATCCACCAACCTGTCCTTCTCCTGTTTTGAGCAAACCCCACCCGAGAACAGCTTTCTCCGAGTCACGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CCA 72 bp TGCCATTGCCGTGACTCGGAGAAAGCTGTTCTCGGGTaGGGTTTGCTCAAAACAGGAGAAGGACAGGTTGGT +
Preference number: 6 (lower is better)
Translates to: CHCRDSEKAVLG*GLLKTGEGQVG
Trigger: ACCAACCTGTCCTTCTCCTGTTTTGAGCAAACCCCACCCGAGAACAGCTTTCTCCGAGTCACGGCAATGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS TCA 72 bp TTCCTGAAACCTGAAGCAAGAGTGAGTAGTGGCCAATaGCAGCATCCACAGGTGTGGTCACAGAGACGGTCC +
Preference number: 6 (lower is better)
Translates to: FLKPEARVSSGQ*QHPQVWSQRRS
Trigger: GGACCGTCTCTGTGACCACACCTGTGGATGCTGTCATTGGCCACTACTCACTCTTGCTTCAGGTTTCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS TCA 72 bp TCCTCGTCTGTGGGGTTAATCAAGGTCACTGAGAGCTaGCCATCTCCACTCAGAGGGATGGAGCTAGATGCT +
Preference number: 6 (lower is better)
Translates to: SSSVGLIKVTES*PSPLRGMELDA
Trigger: AGCATCTAGCTCCATCCCTCTGAGTGGAGATGGTCAGCTCTCAGTGACCTTGATTAACCCCACAGACGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp AGTCTCATCACCTGGTTGGGTTTGAGCATGAACAACTaGTTCTTGCTCCAGAGACCAGCAGCGAGGACTCCA +
Preference number: 6 (lower is better)
Translates to: SLITWLGLSMNN*FLLQRPAARTP
Trigger: TGGAGTCCTCGCTGCTGGTCTCTGGAGCAAGAAGCAGTTGTTCATGCTCAAACCCAACCAGGTGATGAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CCA 72 bp CGACGTTTGTACAACAAGGCACCTTCCTGGGCAGCCTaGGTCTGTGAAATAGGCAGGACACTCTTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: RRLYNKAPSWAA*VCEIGRTLFFL
Trigger: CAAGAAGAAGAGTGTCCTGCCTATTTCACAGACCCAGGCTGCCCAGGAAGGTGCCTTGTTGTACAAACGTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp CGAAGAACATGTGTAGAGGATCCCAGGGCTCACAACTaGGAGGACACATGCCGTTGTCTTTCCCAAGCTTCA +
Preference number: 6 (lower is better)
Translates to: RRTCVEDPRAHN*EDTCRCLSQAS
Trigger: TGAAGCTTGGGAAAGACAACGGCATGTGTCCTCCCAGTTGTGAGCCCTGGGATCCTCTACACATGTTCTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp ACAACTCGGGCCACGTGTGCAGGCTGGTTCCAGTCTTTCACTTGCTaGTCCATACTCAGTAACTTCAGGCTGAGGTCCATGACGTCTTTC +
Preference number: 6 (lower is better)
Translates to: TTRATCAGWFQSFTC*SILSNFRLRSMTSF
Trigger: GAAAGACGTCATGGACCTCAGCCTGAAGTTACTGAGTATGGACAAGCAAGTGAAAGACTGGAACCAGCCTGCACACGTGGCCCGAGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp CCAGTGTTGGGCATCTCTTTCCTCCACTGCTGCACTCCACCCTTTTaGGTCCCCAAGAGAGGAAATTGGGAAGATGGCTTGGGTCTTATT +
Preference number: 6 (lower is better)
Translates to: PVLGISFLHCCTPPF*VPKRGNWEDGLGLI
Trigger: AATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGTGCAGCAGTGGAGGAAAGAGATGCCCAACACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp AGCCACTTTCTTCAGGGCAGACAGAAATGTGTGGGTTaGAGCACGGAAGTTCAGGGTGATAGTGAAGGACTG +
Preference number: 6 (lower is better)
Translates to: SHFLQGRQKCVG*STEVQGDSEGL
Trigger: CAGTCCTTCACTATCACCCTGAACTTCCGTGCTCCAACCCACACATTTCTGTCTGCCCTGAAGAAAGTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp GGATCCCAGGGCTCACAACTGGGAGGACACATGCCGTaGTCTTTCCCAAGCTTCAGTCTTTCTTTTTGGACT +
Preference number: 6 (lower is better)
Translates to: GSQGSQLGGHMP*SFPSFSLSFWT
Trigger: AGTCCAAAAAGAAAGACTGAAGCTTGGGAAAGACAACGGCATGTGTCCTCCCAGTTGTGAGCCCTGGGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp TCTAGCTGGCCCTTCTTCATTCTTCAAAACAGCCTTTaGTGGATCATCTGGGTGCAGACTGCCCAGCCTGGA +
Preference number: 6 (lower is better)
Translates to: SSWPFFILQNSL*WIIWVQTAQPG
Trigger: TCCAGGCTGGGCAGTCTGCACCCAGATGATCCACAAAAGGCTGTTTTGAAGAATGAAGAAGGGCCAGCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CAA 72 bp CTGGAACATGTCACAATCTACTTCCACAGTGAGCCTTaGGAGCCCCAGATGTGTTGGGGTGAACTGGAACTG +
Preference number: 6 (lower is better)
Translates to: LEHVTIYFHSEP*EPQMCWGELEL
Trigger: CAGTTCCAGTTCACCCCAACACATCTGGGGCTCCAAAGGCTCACTGTGGAAGTAGATTGTGACATGTTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CAA 90 bp ACCTTGGGACAAATCAGGTCTGTTCATCCAGCATTCTACAGACGTTaGGAAGACCCAGATATGGCCCCTCTGTCCTTCTCCATTCTGGAG +
Preference number: 6 (lower is better)
Translates to: TLGQIRSVHPAFYRR*EDPDMAPLSFSILE
Trigger: CTCCAGAATGGAGAAGGACAGAGGGGCCATATCTGGGTCTTCCAAACGTCTGTAGAATGCTGGATGAACAGACCTGATTTGTCCCAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp AAGCTGTTCTCGGGTGGGGTTTGCTCAAAACAGGAGAAGGACAGGTaGGTGGATAGTCTCATCACCTGGTTGGGTTTGAGCATGAACAAC +
Preference number: 6 (lower is better)
Translates to: KLFSGGVCSKQEKDR*VDSLITWLGLSMNN
Trigger: GTTGTTCATGCTCAAACCCAACCAGGTGATGAGACTATCCACCAACCTGTCCTTCTCCTGTTTTGAGCAAACCCCACCCGAGAACAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS GCA 72 bp GTAGAGGATCCCAGGGCTCACAACTGGGAGGACACATaGCGTTGTCTTTCCCAAGCTTCAGTCTTTCTTTTT +
Preference number: 6 (lower is better)
Translates to: VEDPRAHNWEDT*RCLSQASVFLF
Trigger: AAAAAGAAAGACTGAAGCTTGGGAAAGACAACGGCATGTGTCCTCCCAGTTGTGAGCCCTGGGATCCTCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp CATTCTAACGGAGACAGTGAGGGGCCGATACTGTGCTaGTCTCTTTGGCATCTCGATGATAAGATCCGGTTT +
Preference number: 6 (lower is better)
Translates to: HSNGDSEGPILC*SLWHLDDKIRF
Trigger: AAACCGGATCTTATCATCGAGATGCCAAAGAGAGCAGCACAGTATCGGCCCCTCACTGTCTCCGTTAGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS GCA 72 bp ATGAGTCCCCTTCCAAAGATGGAGATGATGCAGTTCTaGATGGGGGCCTCTAAGGAGTTGTGCATTCTAACG +
Preference number: 6 (lower is better)
Translates to: MSPLPKMEMMQF*MGASKELCILT
Trigger: CGTTAGAATGCACAACTCCTTAGAGGCCCCCATGCAGAACTGCATCATCTCCATCTTTGGAAGGGGACTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS CAA 72 bp CAAATCAGGTCTGTTCATCCAGCATTCTACAGACGTTaGGAAGACCCAGATATGGCCCCTCTGTCCTTCTCC +
Preference number: 6 (lower is better)
Translates to: QIRSVHPAFYRR*EDPDMAPLSFS
Trigger: GGAGAAGGACAGAGGGGCCATATCTGGGTCTTCCAAACGTCTGTAGAATGCTGGATGAACAGACCTGATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp GTGCTGATGCAGTTGCCCACATCTTTTCTGTTGGAGTaGGTCAACTCCAACTTCCCATCCTCACAGCACTTC +
Preference number: 6 (lower is better)
Translates to: VLMQLPTSFLLE*VNSNFPSSQHF
Trigger: GAAGTGCTGTGAGGATGGGAAGTTGGAGTTGACCAACTCCAACAGAAAAGATGTGGGCAACTGCATCAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp GACAGGTTGGTGGATAGTCTCATCACCTGGTTGGGTTaGAGCATGAACAACTGCTTCTTGCTCCAGAGACCA +
Preference number: 6 (lower is better)
Translates to: DRLVDSLITWLG*SMNNCFLLQRP
Trigger: TGGTCTCTGGAGCAAGAAGCAGTTGTTCATGCTCAAACCCAACCAGGTGATGAGACTATCCACCAACCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102490.10
CDS GCA 72 bp GGGAAGATGGCTTGGGTCTTATTGATCTTGGAAGGTTaGTCTCCCGTTTGTGCAATGAGAGCCACTTTCTTC +
Preference number: 6 (lower is better)
Translates to: GKMAWVLLILEG*SPVCAMRATFF
Trigger: GAAGAAAGTGGCTCTCATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp TGCACTCCACCCTTTTTGGTCCCCAAGAGAGGAAATTaGGAAGATGGCTTGGGTCTTATTGATCTTGGAAGG +
Preference number: 6 (lower is better)
Translates to: CTPPFLVPKRGN*EDGLGLIDLGR
Trigger: CCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp AAATCAGGTCTGTTCATCCAGCATTCTACAGACGTTTaGAAGACCCAGATATGGCCCCTCTGTCCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: KSGLFIQHSTDV*KTQIWPLCPSP
Trigger: TGGAGAAGGACAGAGGGGCCATATCTGGGTCTTCCAAACGTCTGTAGAATGCTGGATGAACAGACCTGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CCA 72 bp AAGAGAGAAGGGACCCTTGTGCATCTTCCCTCTGTCTaGAATGCTTGGTACATTTTTCTAGCTGGCCCTTCT +
Preference number: 6 (lower is better)
Translates to: KREGTLVHLPSV*NAWYIFLAGPS
Trigger: AGAAGGGCCAGCTAGAAAAATGTACCAAGCATTCCAGACAGAGGGAAGATGCACAAGGGTCCCTTCTCTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CAA 72 bp GAGGAAATTGGGAAGATGGCTTGGGTCTTATTGATCTaGGAAGGTTGCTCTCCCGTTTGTGCAATGAGAGCC +
Preference number: 6 (lower is better)
Translates to: EEIGKMAWVLLI*EGCSPVCAMRA
Trigger: GGCTCTCATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp TCCCCAAGAGAGGAAATTGGGAAGATGGCTTGGGTCTTATTGATCTaGGAAGGTTGCTCTCCCGTTTGTGCAATGAGAGCCACTTTCTTC +
Preference number: 6 (lower is better)
Translates to: SPREEIGKMAWVLLI*EGCSPVCAMRATFF
Trigger: GAAGAAAGTGGCTCTCATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp TTTTGGTCCCCAAGAGAGGAAATTGGGAAGATGGCTTGGGTCTTATaGATCTTGGAAGGTTGCTCTCCCGTTTGTGCAATGAGAGCCACT +
Preference number: 6 (lower is better)
Translates to: FWSPREEIGKMAWVL*ILEGCSPVCAMRAT
Trigger: AGTGGCTCTCATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 90 bp ACTCCACCCTTTTTGGTCCCCAAGAGAGGAAATTGGGAAGATGGCTaGGGTCTTATTGATCTTGGAAGGTTGCTCTCCCGTTTGTGCAAT +
Preference number: 6 (lower is better)
Translates to: TPPFLVPKRGNWEDG*GLIDLGRLLSRLCN
Trigger: ATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAAAGGGTGGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS GCA 72 bp AGAAGGGACCCTTGTGCATCTTCCCTCTGTCTGGAATaGTTGGTACATTTTTCTAGCTGGCCCTTCTTCATT +
Preference number: 6 (lower is better)
Translates to: RRDPCASSLCLE*LVHFSSWPFFI
Trigger: AATGAAGAAGGGCCAGCTAGAAAAATGTACCAAGCATTCCAGACAGAGGGAAGATGCACAAGGGTCCCTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CCA 72 bp TTTTGGTCCCCAAGAGAGGAAATTGGGAAGATGGCTTaGGTCTTATTGATCTTGGAAGGTTGCTCTCCCGTT +
Preference number: 6 (lower is better)
Translates to: FWSPREEIGKMA*VLLILEGCSPV
Trigger: AACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCAATTTCCTCTCTTGGGGACCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp TGGGAAGATGGCTTGGGTCTTATTGATCTTGGAAGGTaGCTCTCCCGTTTGTGCAATGAGAGCCACTTTCTT +
Preference number: 6 (lower is better)
Translates to: WEDGLGLIDLGR*LSRLCNESHFL
Trigger: AAGAAAGTGGCTCTCATTGCACAAACGGGAGAGCAACCTTCCAAGATCAATAAGACCCAAGCCATCTTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10
CDS CAA 72 bp AGGGACCCTTGTGCATCTTCCCTCTGTCTGGAATGCTaGGTACATTTTTCTAGCTGGCCCTTCTTCATTCTT +
Preference number: 6 (lower is better)
Translates to: RDPCASSLCLEC*VHFSSWPFFIL
Trigger: AAGAATGAAGAAGGGCCAGCTAGAAAAATGTACCAAGCATTCCAGACAGAGGGAAGATGCACAAGGGTCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CAA 90 bp AAAGAGAGAAGGGACCCTTGTGCATCTTCCCTCTGTCTGGAATGCTaGGTACATTTTTCTAGCTGGCCCTTCTTCATTCTTCAAAACAGC +
Preference number: 6 (lower is better)
Translates to: KERRDPCASSLCLEC*VHFSSWPFFILQNS
Trigger: GCTGTTTTGAAGAATGAAGAAGGGCCAGCTAGAAAAATGTACCAAGCATTCCAGACAGAGGGAAGATGCACAAGGGTCCCTTCTCTCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023987.6
CDS CAA 90 bp AAGCTTCAGTCTTTCTTTTTGGACTTTCTCCAGTACCTCCTTTTCTaGAAGAGATCCTGCAGGATACTTGTAGTTCTGAGTGATGTCTTC +
Preference number: 6 (lower is better)
Translates to: KLQSFFLDFLQYLLF*KRSCRILVVLSDVF
Trigger: GAAGACATCACTCAGAACTACAAGTATCCTGCAGGATCTCTTCAAGAAAAGGAGGTACTGGAGAAAGTCCAAAAAGAAAGACTGAAGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023987.6
ENSMUST00000102490.10