Pregenerated sensors for EMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001964Ensembl transcript IDs: ENSMUST00000002029.13, ENSMUST00000088313.5, ENSMUST00000096424.11, ENSMUST00000119197.8, ENSMUST00000152288.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATGTCATCACGCACCTGGTGATGGAAGGTATCAGCATCTACAAGTaGGGTCCCCGGCTGGCGGAAGCTCTTGGACATGCCCACAGACTC | + |
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Preference number: 1 (lower is better) Translates to: NVITHLVMEGISIYK*GPRLAEALGHAHRL Trigger: GAGTCTGTGGGCATGTCCAAGAGCTTCCGCCAGCCGGGGACCTCACTTGTAGATGCTGATACCTTCCATCACCAGGTGCGTGATGACATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR TCA 90 bp | TGTGTCCATGAAAGCAAAGCCAGGGTGGTCTTTGTTAATACCCCCTaGAAAGGTGACAACAAACAGGCATGCATGACAACTACCACTGCC | + |
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Preference number: 1 (lower is better) Translates to: CVHESKARVVFVNTP*KGDNKQACMTTTTA Trigger: GGCAGTGGTAGTTGTCATGCATGCCTGTTTGTTGTCACCTTTTCAGGGGGTATTAACAAAGACCACCCTGGCTTTGCTTTCATGGACACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR CCA 90 bp | AGCTCTTGGACATGCCCACAGACTCAGGCTCCCCGTATGTCTTGGTaGTCAAATAACTCTCCTCATAGTAGTCATCATTATAGTCCTTGC | + |
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Preference number: 1 (lower is better) Translates to: SSWTCPQTQAPRMSW*SNNSPHSSHHYSPC Trigger: GCAAGGACTATAATGATGACTACTATGAGGAGAGTTATTTGACCACCAAGACATACGGGGAGCCTGAGTCTGTGGGCATGTCCAAGAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR CCA 90 bp | GGAAGCTCTTGGACATGCCCACAGACTCAGGCTCCCCGTATGTCTTaGTGGTCAAATAACTCTCCTCATAGTAGTCATCATTATAGTCCT | + |
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Preference number: 1 (lower is better) Translates to: GSSWTCPQTQAPRMS*WSNNSPHSSHHYSP Trigger: AGGACTATAATGATGACTACTATGAGGAGAGTTATTTGACCACCAAGACATACGGGGAGCCTGAGTCTGTGGGCATGTCCAAGAGCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCCCAGAGCAGCAGCAGGGGCCTGCTTCTCTGGCCGAATGGCACGTCGGGTATGGAGACATTGGAAATaGGGCGGTAGTGTGCGATGC | + |
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Preference number: 2 (lower is better) Translates to: WPRAAAGACFSGRMARRVWRHWK*GGSVRC Trigger: GCATCGCACACTACCGCCCCATTTCCAATGTCTCCA...TACCCGACGTGCCATTCGGCCAGAGAAGCAGGCCCCTGCTGCTGCTCTGGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGCAGCAAAGACCAGGAAGAGTAACAGCTGGCCCCAGAGTGGGACCTGTCGAATCAGCATCTACAAGTaGGGTCCCCGGCTGGCGGAA | + |
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Preference number: 2 (lower is better) Translates to: KAAKTRKSNSWPQSGTCRISIYK*GPRLAE Trigger: TTCCGCCAGCCGGGGACCTCACTTGTAGATGCTGAT...TCGACAGGTCCCACTCTGGGGCCAGCTGTTACTCTTCCTGGTCTTTGCTGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAGCTCCTGGAGACATTGGAAATGGGGCGGTAGTGTGCGATGCTCTGGTAGGGCTGGCGGAAGCTCTTaGACATGCCCACAGACTCAG | + |
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Preference number: 2 (lower is better) Translates to: ESSWRHWKWGGSVRCSGRAGGSS*TCPQTQ Trigger: CTGAGTCTGTGGGCATGTCCAAGAGCTTCCGCCAGC...CCTACCAGAGCATCGCACACTACCGCCCCATTTCCAATGTCTCCAGGAGCTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR-3UTR TCA 90 bp | AGCACTTGTTTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTGGCTTCCTTGGCAGGATaGGGTGGGAGACAAGCATTG | + |
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Preference number: 2 (lower is better) Translates to: STCFLPQGQAQPKGKATLASLAG*GGRQAL Trigger: CAATGCTTGTCTCCCACCTCATCCTGCCAAGGAAGC...CAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAAACAAGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR-3UTR CCA 90 bp | GGAGACATTGGAAATGGGGCGGTAGTGTGCGATGCTCTGGTAGGCACTGTCTTGCCCCGTATGTCTTGGTaGTCAAATAACTCTCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: GDIGNGAVVCDALVGTVLPRMSW*SNNSPH Trigger: ATGAGGAGAGTTATTTGACCACCAAGACATACGGGG...CAAGACAGTGCCTACCAGAGCATCGCACACTACCGCCCCATTTCCAATGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR-3UTR TCA 90 bp | AGCACTTGTTTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTGACAAACAGGCATGCATaGCAACTACCACTGCCACCA | + |
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Preference number: 2 (lower is better) Translates to: STCFLPQGQAQPKGKATLTNRHA*QLPLPP Trigger: TGGTGGCAGTGGTAGTTGTCATGCATGCCTGTTTGT...CAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAAACAAGTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR-3UTR TCA 90 bp | AGCACAACCAAAGGGAAAAGCCACATTGAGTTTGGAGACCTAAAACCAACCACCTTTCCTCTAATGAAGTaGGGTCCTCCCACCAGACCC | + |
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Preference number: 2 (lower is better) Translates to: STTKGKSHIEFGDLKPTTFPLMK*GPPTRP Trigger: GGGTCTGGTGGGAGGACCTCACTTCATTAGAGGAAA...GGTGGTTGGTTTTAGGTCTCCAAACTCAATGTGGCTTTTCCCTTTGGTTGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR-3UTR TCA 90 bp | CCTGTGCCATGGCAGCCCAGCTCCTATCCCAGTAGGAAGAATCAACAAGGTAAATTTGTTAATACCCCCTaGAAAGGTGACAACAAACAG | + |
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Preference number: 2 (lower is better) Translates to: PVPWQPSSYPSRKNQQGKFVNTP*KGDNKQ Trigger: CTGTTTGTTGTCACCTTTTCAGGGGGTATTAACAAA...TTTACCTTGTTGATTCTTCCTACTGGGATAGGAGCTGGGCTGCCATGGCACAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR-3UTR TCA 90 bp | TTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTGAGTTTGGAGTTATTATTGTGTCCATaGAAGCAAAGCCAGGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: FLPQGQAQPKGKATLSLELLLCP*KQSQGG Trigger: ACCACCCTGGCTTTGCTTTCATGGACACAATAATAA...CTCCAAACTCAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR-3UTR CAA 90 bp | AAGGCAGCAAAGACCAGGAAGAGTAACAGCTGGCCCCAGAGTGGGACCTGTCGACTGGTAGGCACTGTCTaGGCCATAGATGAGGCGCTC | + |
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Preference number: 3 (lower is better) Translates to: KAAKTRKSNSWPQSGTCRLVGTV*AIDEAL Trigger: GAGCGCCTCATCTATGGCCAAGACAGTGCCTACCAG...TCGACAGGTCCCACTCTGGGGCCAGCTGTTACTCTTCCTGGTCTTTGCTGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR TCA 72 bp | ACGCACCTGGTGATGGAAGGTATCAGCATCTACAAGTaGGGTCCCCGGCTGGCGGAAGCTCTTGGACATGCC | + |
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Preference number: 3 (lower is better) Translates to: THLVMEGISIYK*GPRLAEALGHA Trigger: GGCATGTCCAAGAGCTTCCGCCAGCCGGGGACCTCACTTGTAGATGCTGATACCTTCCATCACCAGGTGCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR CCA 72 bp | AGCAGAAAGGCAGCAAAGACCAGGAAGAGTAACAGCTaGCCCCAGAGTGGGACCTGTCGATCCTGGCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: SRKAAKTRKSNS*PQSGTCRSWPR Trigger: TCTGGGCCAGGATCGACAGGTCCCACTCTGGGGCCAGCTGTTACTCTTCCTGGTCTTTGCTGCCTTTCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR GCA 72 bp | AGAGCTCCTGGAGACATTGGAAATGGGGCGGTAGTGTaGGATGCTCTGGTAGGCACTGTCTTGGCCATAGAT | + |
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Preference number: 3 (lower is better) Translates to: RAPGDIGNGAVV*DALVGTVLAID Trigger: ATCTATGGCCAAGACAGTGCCTACCAGAGCATCGCACACTACCGCCCCATTTCCAATGTCTCCAGGAGCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGTAGCACTTGTTTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCAGTAGAAGGCCAACATTaGCTGCTTCCTTGGCAGGAT | + |
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Preference number: 3 (lower is better) Translates to: WVALVSFPKAKHNQREKPVEGQH*LLPWQD Trigger: ATCCTGCCAAGGAAGCAGCAAATGTTGGCCTTCTAC...TGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAAACAAGTGCTACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR TCA 72 bp | CCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTaGGTTTGGAGACCTAAAACCAACCACCTGTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: PKAKHNQREKPH*VWRPKTNHLCH Trigger: ATGGCACAGGTGGTTGGTTTTAGGTCTCCAAACTCAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR CCA 72 bp | TGGACATGCCCACAGACTCAGGCTCCCCGTATGTCTTaGTGGTCAAATAACTCTCCTCATAGTAGTCATCAT | + |
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Preference number: 3 (lower is better) Translates to: WTCPQTQAPRMS*WSNNSPHSSHH Trigger: ATGATGACTACTATGAGGAGAGTTATTTGACCACCAAGACATACGGGGAGCCTGAGTCTGTGGGCATGTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR TCA 72 bp | GAAAGCAAAGCCAGGGTGGTCTTTGTTAATACCCCCTaGAAAGGTGACAACAAACAGGCATGCATGACAACT | + |
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Preference number: 3 (lower is better) Translates to: ESKARVVFVNTP*KGDNKQACMTT Trigger: AGTTGTCATGCATGCCTGTTTGTTGTCACCTTTTCAGGGGGTATTAACAAAGACCACCCTGGCTTTGCTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR CCA 72 bp | ACATGCCCACAGACTCAGGCTCCCCGTATGTCTTGGTaGTCAAATAACTCTCCTCATAGTAGTCATCATTAT | + |
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Preference number: 3 (lower is better) Translates to: TCPQTQAPRMSW*SNNSPHSSHHY Trigger: ATAATGATGACTACTATGAGGAGAGTTATTTGACCACCAAGACATACGGGGAGCCTGAGTCTGTGGGCATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| 3UTR CCA 72 bp | ATGTTTATTATTGTGTCCATGAAAGCAAAGCCAGGGTaGTCTTTGTTAATACCCCCTGAAAAGGTGACAACA | + |
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Preference number: 3 (lower is better) Translates to: MFIIVSMKAKPG*SLLIPPEKVTT Trigger: TGTTGTCACCTTTTCAGGGGGTATTAACAAAGACCACCCTGGCTTTGCTTTCATGGACACAATAATAAACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR GCA 90 bp | CTGGCCCAGAGCAGCAGCAGGGGCCTGCTTCTCTGGCCGAATGGCACGTCGGGTTCTTTTCGTAGAGCTTaGGAGTGGAACTGGCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LAQSSSRGLLLWPNGTSGSFRRA*EWNWRS Trigger: GCTACGCCAGTTCCACTCGCAAGCTCTACGAAAAGA...ACCCGACGTGCCATTCGGCCAGAGAAGCAGGCCCCTGCTGCTGCTCTGGGCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| CDS-3UTR CCA 90 bp | CTAAGGGTCAGAGGCAATAGGGCTAGGAGGCTCCAGAGGAAGGTACAGGTAGGCCAGCTGGCCCCAGAGTaGGACCTGTCGATCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LRVRGNRARRLQRKVQVGQLAPE*DLSILA Trigger: GGCCAGGATCGACAGGTCCCACTCTGGGGCCAGCTG...GCCTACCTGTACCTTCCTCTGGAGCCTCCTAGCCCTATTGCCTCTGACCCTTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR CAA 72 bp | GGGGCGGTAGTGTGCGATGCTCTGGTAGGCACTGTCTaGGCCATAGATGAGGCGCTCCCTATCCTTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: GAVVCDALVGTV*AIDEALPILAF Trigger: GAAGGCAAGGATAGGGAGCGCCTCATCTATGGCCAAGACAGTGCCTACCAGAGCATCGCACACTACCGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| CDS-3UTR TCA 90 bp | CCCCAGCAAACACCGATAAGGCAATCAGCCAAAACTCCTGGTAAGAGCTGCTCTATCAGCATCTACAAGTaGGGTCCCCGGCTGGCGGAA | + |
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Preference number: 4 (lower is better) Translates to: PQQTPIRQSAKTPGKSCSISIYK*GPRLAE Trigger: TTCCGCCAGCCGGGGACCTCACTTGTAGATGCTGAT...AGAGCAGCTCTTACCAGGAGTTTTGGCTGATTGCCTTATCGGTGTTTGCTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CCA 90 bp | CCCCAGCAAACACCGATAAGGCAATCAGCCAAAACTCCTGGTAAGAGCTGCTCTGCTGGCGGAAGCTCTTaGACATGCCCACAGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: PQQTPIRQSAKTPGKSCSAGGSS*TCPQTQ Trigger: CTGAGTCTGTGGGCATGTCCAAGAGCTTCCGCCAGC...AGAGCAGCTCTTACCAGGAGTTTTGGCTGATTGCCTTATCGGTGTTTGCTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR GCA 90 bp | TGGGTAGCACTTGTTTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCAAATGGGGCGGTAGTGTaGGATGCTCTGGTAGGCACT | + |
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Preference number: 4 (lower is better) Translates to: WVALVSFPKAKHNQREKPNGAVV*DALVGT Trigger: AGTGCCTACCAGAGCATCGCACACTACCGCCCCATT...TGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAAACAAGTGCTACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CCA 90 bp | CTAAGGGTCAGAGGCAATAGGGCTAGGAGGCTCCAGAGGAAGGTACAGGTAGGCAAGAGTCTCCTTCTCTaGGTCTCGTACTCGAAGATT | + |
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Preference number: 4 (lower is better) Translates to: LRVRGNRARRLQRKVQVGKSLLL*VSYSKI Trigger: AATCTTCGAGTACGAGACCCAGAGAAGGAGACTCTT...GCCTACCTGTACCTTCCTCTGGAGCCTCCTAGCCCTATTGCCTCTGACCCTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CCA 90 bp | CCCCAGCAAACACCGATAAGGCAATCAGCCAAAACTCCTGGTAAGAGCTGCTCTTGGAGACATTGGAAATaGGGCGGTAGTGTGCGATGC | + |
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Preference number: 4 (lower is better) Translates to: PQQTPIRQSAKTPGKSCSWRHWK*GGSVRC Trigger: GCATCGCACACTACCGCCCCATTTCCAATGTCTCCA...AGAGCAGCTCTTACCAGGAGTTTTGGCTGATTGCCTTATCGGTGTTTGCTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CCA 90 bp | GGAGACATTGGAAATGGGGCGGTAGTGTGCGATGCTCTGGTAGGCACTGTCTTGAAGAGTCTCCTTCTCTaGGTCTCGTACTCGAAGATT | + |
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Preference number: 4 (lower is better) Translates to: GDIGNGAVVCDALVGTVLKSLLL*VSYSKI Trigger: AATCTTCGAGTACGAGACCCAGAGAAGGAGACTCTT...CAAGACAGTGCCTACCAGAGCATCGCACACTACCGCCCCATTTCCAATGTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| CDS-3UTR GCA 90 bp | TTTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTGAGTTTGGAGGCGCTCCCTATCCTTaGCTTCCTCTTCTAAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: FPSPRPSTTKGKSHIEFGGAPYP*LPLLKK Trigger: CTTCTTTAGAAGAGGAAGGCAAGGATAGGGAGCGCC...TCCAAACTCAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR GCA 90 bp | ACAACCAAAGGGAAAAGCCACATTGAGTTTGGAGACCTAAAACCAACCACCTGTGGCGGTAGTGTGCGATaGTCTGGTAGGCACTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: TTKGKSHIEFGDLKPTTCGGSVR*SGRHCL Trigger: AAGACAGTGCCTACCAGAGCATCGCACACTACCGCC...ACAGGTGGTTGGTTTTAGGTCTCCAAACTCAATGTGGCTTTTCCCTTTGGTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR GCA 90 bp | CTTCCTTGGCAGGATGAGGTGGGAGACAAGCATTGCCTTAGGCTAGACCTTGCACATCATTATAGTCCTTaGTCTGGTAAAGTAAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: LPWQDEVGDKHCLRLDLAHHYSP*SGKVRR Trigger: ACGCCTTACTTTACCAGAGCAAGGACTATAATGATG...TGCAAGGTCTAGCCTAAGGCAATGCTTGTCTCCCACCTCATCCTGCCAAGGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CCA 90 bp | CCGATAAGGCAATCAGCCAAAACTCCTGGTAAGAGCTGCTCTAAAACCAATACCCCCCGTATGTCTTGGTaGTCAAATAACTCTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: PIRQSAKTPGKSCSKTNTPRMSW*SNNSPH Trigger: ATGAGGAGAGTTATTTGACCACCAAGACATACGGGG...GGTATTGGTTTTAGAGCAGCTCTTACCAGGAGTTTTGGCTGATTGCCTTATCGG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CCA 90 bp | CCTGTGCCATGGCAGCCCAGCTCCTATCCCAGTAGGAAGAATCAACAAGGTAAACTTCTTCAGCTTGTATaGAATAGTAAACAAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: PVPWQPSSYPSRKNQQGKLLQLV*NSKQRA Trigger: TGCTCTTTGTTTACTATTCCATACAAGCTGAAGAAG...TTTACCTTGTTGATTCTTCCTACTGGGATAGGAGCTGGGCTGCCATGGCACAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| 3UTR CAA 72 bp | ATTATTGTGTCCATGAAAGCAAAGCCAGGGTGGTCTTaGTTAATACCCCCTGAAAAGGTGACAACAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: IIVSMKAKPGWS*LIPPEKVTTNR Trigger: CCTGTTTGTTGTCACCTTTTCAGGGGGTATTAACAAAGACCACCCTGGCTTTGCTTTCATGGACACAATAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS TCA 90 bp | ATGTCTGAGTCCACGGCGGCTGAATCCAAGTCCACAATAGGCCCATaGGGGATGTTGTACTGGCGTAGCACTGCGGCCAGCTCAGTATCG | + |
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Preference number: 5 (lower is better) Translates to: MSESTAAESKSTIGP*GMLYWRSTAASSVS Trigger: CGATACTGAGCTGGCCGCAGTGCTACGCCAGTACAACATCCCTCATGGGCCTATTGTGGACTTGGATTCAGCCGCCGTGGACTCAGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096424.11 |
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| CDS TCA 90 bp | TGTAAGACATGGATGCTGGTGATGGAAGGTATCAGCATCTACAAGTaGGGTCCCCGGCTGGCGGAAGCTCTTGGACATGCCCACAGACTC | + |
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Preference number: 5 (lower is better) Translates to: CKTWMLVMEGISIYK*GPRLAEALGHAHRL Trigger: GAGTCTGTGGGCATGTCCAAGAGCTTCCGCCAGCCGGGGACCTCACTTGTAGATGCTGATACCTTCCATCACCAGCATCCATGTCTTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119197.8 |
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| CDS-3UTR CAA 90 bp | TTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTGAGTTTGGAGCTGGTAGGCACTGTCTaGGCCATAGATGAGGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: FLPQGQAQPKGKATLSLELVGTV*AIDEAL Trigger: GAGCGCCTCATCTATGGCCAAGACAGTGCCTACCAG...CTCCAAACTCAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CAA 90 bp | CCGATAAGGCAATCAGCCAAAACTCCTGGTAAGAGCTGCTCTAAAACCAATACCTCCATCCAGAAGGGGTaGCCTTCTTCAGCTTGTATG | + |
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Preference number: 5 (lower is better) Translates to: PIRQSAKTPGKSCSKTNTSIQKG*PSSACM Trigger: CATACAAGCTGAAGAAGGCAACCCCTTCTGGATGGA...GGTATTGGTTTTAGAGCAGCTCTTACCAGGAGTTTTGGCTGATTGCCTTATCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS-3UTR CAA 90 bp | AGCACTTGTTTCCTTCCCCAAGGCCAAGCACAACCAAAGGGAAAAGCCACATTGAAGGCGTCTTCTTTTTaGGGCAGATCATACATGTCT | + |
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Preference number: 5 (lower is better) Translates to: STCFLPQGQAQPKGKATLKASSF*GRSYMS Trigger: AGACATGTATGATCTGCCCAAAAAAGAAGACGCCTT...CAATGTGGCTTTTCCCTTTGGTTGTGCTTGGCCTTGGGGAAGGAAACAAGTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002029.13 |
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| CDS CCA 90 bp | AATCCAAGTCTGAGAACTGATAGGAGAATGAAGAAGATGACGAGTTaGGGGGTAAGAGTCTCCTTCTCTGGGTCTCGTACTCGAAGATTT | + |
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Preference number: 5 (lower is better) Translates to: NPSLRTDRRMKKMTS*GVRVSFSGSRTRRF Trigger: AAATCTTCGAGTACGAGACCCAGAGAAGGAGACTCTTACCCCCCAACTCGTCATCTTCTTCATTCTCCTATCAGTTCTCAGACTTGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000002029.13 ENSMUST00000088313.5 ENSMUST00000119197.8 ENSMUST00000152288.2 |
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| CDS TCA 72 bp | TCCACGGCGGCTGAATCCAAGTCCACAATAGGCCCATaGGGGATGTTGTACTGGCGTAGCACTGCGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: STAAESKSTIGP*GMLYWRSTAAS Trigger: GCTGGCCGCAGTGCTACGCCAGTACAACATCCCTCATGGGCCTATTGTGGACTTGGATTCAGCCGCCGTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096424.11 |
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| CDS CCA 72 bp | CGTACTCGAAGATTTTCTTTTCGTAGAGCTTGCGAGTaGAACTGGCGTAGCACTGCGGCCAGCTCAGTATCG | + |
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Preference number: 6 (lower is better) Translates to: RTRRFSFRRACE*NWRSTAASSVS Trigger: CGATACTGAGCTGGCCGCAGTGCTACGCCAGTTCCACTCGCAAGCTCTACGAAAAGAAAATCTTCGAGTACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152288.2 |
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| CDS TCA 72 bp | TCACCTAGTACTGGAGCTGTAAGACATGGATGCTGGTaGTGGAAGGTATCAGCATCTACAAGTGAGGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: SPSTGAVRHGCW*WKVSASTSEVP Trigger: GGGGACCTCACTTGTAGATGCTGATACCTTCCATCACCAGCATCCATGTCTTACAGCTCCAGTACTAGGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119197.8 |
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| CDS CAA 72 bp | TTAGGGATCCATCCAGAAGGGGTTGCCTTCTTCAGCTaGTATGGAATAGTAAACAAAGAGCAGAAAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: LGIHPEGVAFFS*YGIVNKEQKGS Trigger: GCTGCCTTTCTGCTCTTTGTTTACTATTCCATACAAGCTGAAGAAGGCAACCCCTTCTGGATGGATCCCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002029.13 ENSMUST00000096424.11 |
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