Pregenerated sensors for EMC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027131Ensembl transcript IDs: ENSMUST00000028551.4
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTCAGTCATAAGTTGTGCTGTAGTTTCTTTTCTGCTGTAACATGCTaGACACTGGCCTCACCACAGGAGGCTCTTCTCCACATGCATGAC | + |
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Preference number: 1 (lower is better) Translates to: FSHKLCCSFFSAVTC*TLASPQEALLHMHD Trigger: GTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGCCAGTGTGCAGCATGTTACAGCAGAAAAGAAACTACAGCACAACTTATGACTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| 3UTR GCA 90 bp | ATTTTCAGTCATAAGTTGTGCTGTAGTTTCTTTTCTGCTGTAACATaGTGCACACTGGCCTCACCACAGGAGGCTCTTCTCCACATGCAT | + |
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Preference number: 1 (lower is better) Translates to: IFSHKLCCSFFSAVT*CTLASPQEALLHMH Trigger: ATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGCCAGTGTGCAGCATGTTACAGCAGAAAAGAAACTACAGCACAACTTATGACTGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| 3UTR-3UTR GCA 90 bp | ATTAAGCATTGTTCTCAACCGTTTAATTTATTGAAAGGAGAAGCTGCTACTGAGAGGCTCTTCTCCACATaGATGACTGTTTTAAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: IKHCSQPFNLLKGEAATERLFST*MTVLRE Trigger: CTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCT...CTCAGTAGCAGCTTCTCCTTTCAATAAATTAAACGGTTGAGAACAATGCTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| 3UTR GCA 72 bp | AAGTTGTGCTGTAGTTTCTTTTCTGCTGTAACATGCTaGACACTGGCCTCACCACAGGAGGCTCTTCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: KLCCSFFSAVTC*TLASPQEALLH Trigger: GTGGAGAAGAGCCTCCTGTGGTGAGGCCAGTGTGCAGCATGTTACAGCAGAAAAGAAACTACAGCACAACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| 3UTR GCA 72 bp | CATAAGTTGTGCTGTAGTTTCTTTTCTGCTGTAACATaGTGCACACTGGCCTCACCACAGGAGGCTCTTCTC | + |
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Preference number: 3 (lower is better) Translates to: HKLCCSFFSAVT*CTLASPQEALL Trigger: GAGAAGAGCCTCCTGTGGTGAGGCCAGTGTGCAGCATGTTACAGCAGAAAAGAAACTACAGCACAACTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | CTGGCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGACACTTCGGCCCCTGCTaGCTCCTCCCGGCCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: LASPQEALLHMHDCFKGGHFGPC*LLPAHS Trigger: TGAGTGGGCCGGGAGGAGGCAGCAGGGGCCGAAGTG...TCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | CCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATTTAGGAAGTCTCCCTGTCCACTaGCCCGGTCACTTCGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: PQEALLHMHDCFKGGYLGSLPVH*PGHFGP Trigger: GGGGCCGAAGTGACCGGGGCAGTGGACAGGGAGACT...TCCTAAATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | TGTTCTCAACCGTTTAATTTATTGAAAGGAGAAGCTGCTACTGAGCAGCTGCTAGGTCACTTCGGCCCCTaGTGCCTCCTCCCGGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: CSQPFNLLKGEAATEQLLGHFGP*CLLPAH Trigger: GTGGGCCGGGAGGAGGCAGCAGGGGCCGAAGTGACC...TAGCAGCTGCTCAGTAGCAGCTTCTCCTTTCAATAAATTAAACGGTTGAGAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | ACACTGGCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAAGGTTCATGGGAATCTaGTTGAGGGGACCCAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: TLASPQEALLHMHDCFKGRFMGI*LRGPKA Trigger: CGCCTTGGGTCCCCTCAAGCAGATTCCCATGAACCT...TCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGCCAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR TCA 90 bp | CATAAGTTGTGCTGTAGTTTCTTTTCTGCTGTAACATGCTGCACACTGGCCTCAGCTCAATGGCCCATTTaGACCGCCGGCCTCGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: HKLCCSFFSAVTCCTLASAQWPI*TAGLGW Trigger: CCAACCGAGGCCGGCGGTTCAAATGGGCCATTGAGC...TGAGGCCAGTGTGCAGCATGTTACAGCAGAAAAGAAACTACAGCACAACTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR TCA 90 bp | GCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATATGGCCATAAGTGCTTaGATGGGTCGCCAGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: ASPQEALLHMHDCFKGGYMAISA*MGRQAI Trigger: GATGGCCTGGCGACCCATTCAAGCACTTATGGCCAT...ATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CCA 90 bp | GCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATCGGTCTCTTGCACGCTaGTATCAGGCACTTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: ASPQEALLHMHDCFKGGYRSLAR*YQALAC Trigger: ACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCG...ATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR TCA 90 bp | CAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATTTAGGAGTCGTAAGCCTCCTCCACTaGACTCCATTCTCTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: QEALLHMHDCFKGGYLGVVSLLH*TPFSQG Trigger: CCCCTGAGAGAATGGAGTTCAGTGGAGGAGGCTTAC...GACTCCTAAATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | GCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATCTTGTAAACTGCCAATaGCAAACCCATCAGGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: ASPQEALLHMHDCFKGGYLVNCQ*QTHQVP Trigger: GGGAACCTGATGGGTTTGGCATTGGCAGTTTACAAG...ATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CCA 90 bp | GGGAGGATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGGTCCAAGTAACCGACTaGATAGAGGGAGTCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: GRIFRSQQLKMQMRSICMVQVTD*IEGVSL Trigger: CAGGGAGACTCCCTCTATCCAGTCGGTTACTTGGAC...CATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATATCCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | ATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGGTGCTTATCCGGTCGGTCTCTTaGACGCTGGTATCAGGCACT | + |
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Preference number: 4 (lower is better) Translates to: IFRSQQLKMQMRSICMVLIRSVS*TLVSGT Trigger: AGTGCCTGATACCAGCGTGCAAGAGACCGACCGGAT...AAGCACCATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | GCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATTTAGGAGTCAACAGCGGAAATGGTGTTGCCTaGCATGTACATGATGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: ALLHMHDCFKGGYLGVNSGNGVA*HVHDEE Trigger: CTCTTCATCATGTACATGGCAGGCAACACCATTTCC...GCTGTTGACTCCTAAATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR GCA 90 bp | GGGAGGATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGCTGGCACTTGTAAACTaGCAATGCCAAACCCATCAG | + |
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Preference number: 4 (lower is better) Translates to: GRIFRSQQLKMQMRSICMLALVN*QCQTHQ Trigger: CTGATGGGTTTGGCATTGGCAGTTTACAAGTGCCAG...CATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATATCCTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR TCA 90 bp | TGTTCTCAACCGTTTAATTTATTGAAAGGAGAAGCTGCTACTGAGCAGCTGCTACCATCAGGTTCCCAATaGGATAGACCAAGCCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: CSQPFNLLKGEAATEQLLPSGSQ*DRPSLE Trigger: TTCAAGGCTTGGTCTATCTCATTGGGAACCTGATGG...TAGCAGCTGCTCAGTAGCAGCTTCTCCTTTCAATAAATTAAACGGTTGAGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR TCA 90 bp | ATTAAGCATTGTTCTCAACCGTTTAATTTATTGAAAGGAGAAGCTGCTACTGAGAACTCTCCAGCATCTTaGAAGTGGCTGAAATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: IKHCSQPFNLLKGEAATENSPAS*KWLKWP Trigger: TGGCCATTTCAGCCACTTTCAAGATGCTGGAGAGTT...CTCAGTAGCAGCTTCTCCTTTCAATAAATTAAACGGTTGAGAACAATGCTTAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR TCA 90 bp | ATTAAGCATTGTTCTCAACCGTTTAATTTATTGAAAGGAGAAGCTGCTACTGAGAAGAAACTTCTGACTTaGACTCTCCAGCATCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: IKHCSQPFNLLKGEAATEKKLLT*TLQHLE Trigger: TTCAAGATGCTGGAGAGTTCAAGTCAGAAGTTTCTT...CTCAGTAGCAGCTTCTCCTTTCAATAAATTAAACGGTTGAGAACAATGCTTAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS GCA 90 bp | GCTTGTCCAAGTAACCGACTGGATAGAGGGAGTCTCCCTGTCCACTaGCCCGGTCACTTCGGCCCCTGCTGCCTCCTCCCGGCCCACTCA | + |
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Preference number: 5 (lower is better) Translates to: ACPSNRLDRGSLPVH*PGHFGPCCLLPAHS Trigger: TGAGTGGGCCGGGAGGAGGCAGCAGGGGCCGAAGTGACCGGGGCAGTGGACAGGGAGACTCCCTCTATCCAGTCGGTTACTTGGACAAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CCA 90 bp | CTCTTGCACGCTGGTATCAGGCACTTGCTTGTCCAAGTAACCGACTaGATAGAGGGAGTCTCCCTGTCCACTGCCCCGGTCACTTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: LLHAGIRHLLVQVTD*IEGVSLSTAPVTSA Trigger: GGCCGAAGTGACCGGGGCAGTGGACAGGGAGACTCCCTCTATCCAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CCA 90 bp | CCCAGCAGCGCTTCTCCACCAGGATCCGGTCGGTCTCTTGCACGCTaGTATCAGGCACTTGCTTGTCCAAGTAACCGACTGGATAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: PSSASPPGSGRSLAR*YQALACPSNRLDRG Trigger: CCCTCTATCCAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCGACCGGATCCTGGTGGAGAAGCGCTGCTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS GCA 90 bp | ATGGTGTTGCCTGCCATGTACATGATGAAGAGGTTCATGGGAATCTaGTTGAGGGGACCCAAGGCGATGTCCCAGCAGCGCTTCTCCACC | + |
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Preference number: 5 (lower is better) Translates to: MVLPAMYMMKRFMGI*LRGPKAMSQQRFST Trigger: GGTGGAGAAGCGCTGCTGGGACATCGCCTTGGGTCCCCTCAAGCAGATTCCCATGAACCTCTTCATCATGTACATGGCAGGCAACACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | GCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGGATATAGCTCAATGGCCCATTaGAACCGCCGGCCTCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: ASPQEALLHMHDCFKGGYSSMAH*NRRPRL Trigger: CAACCGAGGCCGGCGGTTCAAATGGGCCATTGAGCT...ATATCCTCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | ACACTGGCCTCACCACAGGAGGCTCTTCTCCACATGCATGACTGTTTTAAGGGAGAACTCTCCAGCATCTaGAAAGTGGCTGAAATGGCC | + |
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Preference number: 5 (lower is better) Translates to: TLASPQEALLHMHDCFKGELSSI*KVAEMA Trigger: GGCCATTTCAGCCACTTTCAAGATGCTGGAGAGTTC...TCCCTTAAAACAGTCATGCATGTGGAGAAGAGCCTCCTGTGGTGAGGCCAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | GGGAGGATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGGATCCGGTCGGTCTCTaGCACGCTGGTATCAGGCAC | + |
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Preference number: 5 (lower is better) Translates to: GRIFRSQQLKMQMRSICMDPVGL*HAGIRH Trigger: GTGCCTGATACCAGCGTGCAAGAGACCGACCGGATC...CATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATATCCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS TCA 90 bp | GAACTCTCCAGCATCTTGAAAGTGGCTGAAATGGCCATAAGTGCTTaGATGGGTCGCCAGGCCATCATACACACCATCATAGTAGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ELSSILKVAEMAISA*MGRQAIIHTIIVGK Trigger: CTTCCCTACTATGATGGTGTGTATGATGGCCTGGCGACCCATTCAAGCACTTATGGCCATTTCAGCCACTTTCAAGATGCTGGAGAGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS GCA 90 bp | CATCATACACACCATCATAGTAGGGAAGATGGAAATGGTGTTGCCTaGCATGTACATGATGAAGAGGTTCATGGGAATCTGCTTGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: HHTHHHSREDGNGVA*HVHDEEVHGNLLEG Trigger: CCCCTCAAGCAGATTCCCATGAACCTCTTCATCATGTACATGGCAGGCAACACCATTTCCATCTTCCCTACTATGATGGTGTGTATGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | GGGAGGATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGGCTGGTATCAGGCACTaGCTTGTCCAAGTAACCGAC | + |
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Preference number: 5 (lower is better) Translates to: GRIFRSQQLKMQMRSICMAGIRH*LVQVTD Trigger: GTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGC...CATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATATCCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS TCA 90 bp | ACTGGCACTTGTAAACTGCCAATGCCAAACCCATCAGGTTCCCAATaGGATAGACCAAGCCTTGAAGAAACTTCTGACTTGAACTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: TGTCKLPMPNPSGSQ*DRPSLEETSDLNSP Trigger: TGGAGAGTTCAAGTCAGAAGTTTCTTCAAGGCTTGGTCTATCTCATTGGGAACCTGATGGGTTTGGCATTGGCAGTTTACAAGTGCCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | CACATGCATGACTGTTTTAAGGGAGGATATTTAGGAGTCAACAGCTTAAAATGCTTCATGGGAATCTGCTaGAGGGGACCCAAGGCGATG | + |
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Preference number: 5 (lower is better) Translates to: HMHDCFKGGYLGVNSLKCFMGIC*RGPKAM Trigger: CATCGCCTTGGGTCCCCTCAAGCAGATTCCCATGAA...GCATTTTAAGCTGTTGACTCCTAAATATCCTCCCTTAAAACAGTCATGCATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | ATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGGTGCTTAATGGCCATAAGTGCTaGAATGGGTCGCCAGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: IFRSQQLKMQMRSICMVLNGHKC*NGSPGH Trigger: ATGGCCTGGCGACCCATTCAAGCACTTATGGCCATT...AAGCACCATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS-3UTR CAA 90 bp | ATATTTAGGAGTCAACAGCTTAAAATGCAGATGAGGTCCATATGCATGGTGCTTAAGATGGAAATGGTGTaGCCTGCCATGTACATGATG | + |
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Preference number: 5 (lower is better) Translates to: IFRSQQLKMQMRSICMVLKMEMV*PAMYMM Trigger: CATCATGTACATGGCAGGCAACACCATTTCCATCTT...AAGCACCATGCATATGGACCTCATCTGCATTTTAAGCTGTTGACTCCTAAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS GCA 72 bp | AGTAACCGACTGGATAGAGGGAGTCTCCCTGTCCACTaGCCCGGTCACTTCGGCCCCTGCTGCCTCCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: SNRLDRGSLPVH*PGHFGPCCLLP Trigger: CGGGAGGAGGCAGCAGGGGCCGAAGTGACCGGGGCAGTGGACAGGGAGACTCCCTCTATCCAGTCGGTTACT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 90 bp | GGCGATGTCCCAGCAGCGCTTCTCCACCAGGATCCGGTCGGTCTCTaGCACGCTGGTATCAGGCACTTGCTTGTCCAAGTAACCGACTGG | + |
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Preference number: 6 (lower is better) Translates to: GDVPAALLHQDPVGL*HAGIRHLLVQVTDW Trigger: CCAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCGACCGGATCCTGGTGGAGAAGCGCTGCTGGGACATCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 90 bp | CTCCACCAGGATCCGGTCGGTCTCTTGCACGCTGGTATCAGGCACTaGCTTGTCCAAGTAACCGACTGGATAGAGGGAGTCTCCCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: LHQDPVGLLHAGIRH*LVQVTDWIEGVSLS Trigger: GGACAGGGAGACTCCCTCTATCCAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCGACCGGATCCTGGTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CCA 72 bp | GCTGGTATCAGGCACTTGCTTGTCCAAGTAACCGACTaGATAGAGGGAGTCTCCCTGTCCACTGCCCCGGTC | + |
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Preference number: 6 (lower is better) Translates to: AGIRHLLVQVTD*IEGVSLSTAPV Trigger: GACCGGGGCAGTGGACAGGGAGACTCCCTCTATCCAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 72 bp | CCAGCAGCGCTTCTCCACCAGGATCCGGTCGGTCTCTaGCACGCTGGTATCAGGCACTTGCTTGTCCAAGTA | + |
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Preference number: 6 (lower is better) Translates to: PAALLHQDPVGL*HAGIRHLLVQV Trigger: TACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCGACCGGATCCTGGTGGAGAAGCGCTGCTGG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 90 bp | GTGTTGCCTGCCATGTACATGATGAAGAGGTTCATGGGAATCTGCTaGAGGGGACCCAAGGCGATGTCCCAGCAGCGCTTCTCCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: VLPAMYMMKRFMGIC*RGPKAMSQQRFSTR Trigger: CCTGGTGGAGAAGCGCTGCTGGGACATCGCCTTGGGTCCCCTCAAGCAGATTCCCATGAACCTCTTCATCATGTACATGGCAGGCAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS GCA 72 bp | CCTGCCATGTACATGATGAAGAGGTTCATGGGAATCTaGTTGAGGGGACCCAAGGCGATGTCCCAGCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: PAMYMMKRFMGI*LRGPKAMSQQR Trigger: GCGCTGCTGGGACATCGCCTTGGGTCCCCTCAAGCAGATTCCCATGAACCTCTTCATCATGTACATGGCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CCA 72 bp | GCTTCTCCACCAGGATCCGGTCGGTCTCTTGCACGCTaGTATCAGGCACTTGCTTGTCCAAGTAACCGACTG | + |
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Preference number: 6 (lower is better) Translates to: ASPPGSGRSLAR*YQALACPSNRL Trigger: CAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCGACCGGATCCTGGTGGAGAAGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 72 bp | GATCCGGTCGGTCTCTTGCACGCTGGTATCAGGCACTaGCTTGTCCAAGTAACCGACTGGATAGAGGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: DPVGLLHAGIRH*LVQVTDWIEGV Trigger: GACTCCCTCTATCCAGTCGGTTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACCGACCGGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 72 bp | GCCATGTACATGATGAAGAGGTTCATGGGAATCTGCTaGAGGGGACCCAAGGCGATGTCCCAGCAGCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: AMYMMKRFMGIC*RGPKAMSQQRF Trigger: GAAGCGCTGCTGGGACATCGCCTTGGGTCCCCTCAAGCAGATTCCCATGAACCTCTTCATCATGTACATGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 90 bp | CAGGCCATCATACACACCATCATAGTAGGGAAGATGGAAATGGTGTaGCCTGCCATGTACATGATGAAGAGGTTCATGGGAATCTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: QAIIHTIIVGKMEMV*PAMYMMKRFMGICL Trigger: CAAGCAGATTCCCATGAACCTCTTCATCATGTACATGGCAGGCAACACCATTTCCATCTTCCCTACTATGATGGTGTGTATGATGGCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS TCA 72 bp | AGCATCTTGAAAGTGGCTGAAATGGCCATAAGTGCTTaGATGGGTCGCCAGGCCATCATACACACCATCATA | + |
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Preference number: 6 (lower is better) Translates to: SILKVAEMAISA*MGRQAIIHTII Trigger: TATGATGGTGTGTATGATGGCCTGGCGACCCATTCAAGCACTTATGGCCATTTCAGCCACTTTCAAGATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS GCA 72 bp | CACCATCATAGTAGGGAAGATGGAAATGGTGTTGCCTaGCATGTACATGATGAAGAGGTTCATGGGAATCTG | + |
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Preference number: 6 (lower is better) Translates to: HHHSREDGNGVA*HVHDEEVHGNL Trigger: CAGATTCCCATGAACCTCTTCATCATGTACATGGCAGGCAACACCATTTCCATCTTCCCTACTATGATGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS TCA 72 bp | TGTAAACTGCCAATGCCAAACCCATCAGGTTCCCAATaGGATAGACCAAGCCTTGAAGAAACTTCTGACTTG | + |
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Preference number: 6 (lower is better) Translates to: CKLPMPNPSGSQ*DRPSLEETSDL Trigger: CAAGTCAGAAGTTTCTTCAAGGCTTGGTCTATCTCATTGGGAACCTGATGGGTTTGGCATTGGCAGTTTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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| CDS CAA 72 bp | ATACACACCATCATAGTAGGGAAGATGGAAATGGTGTaGCCTGCCATGTACATGATGAAGAGGTTCATGGGA | + |
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Preference number: 6 (lower is better) Translates to: IHTIIVGKMEMV*PAMYMMKRFMG Trigger: TCCCATGAACCTCTTCATCATGTACATGGCAGGCAACACCATTTCCATCTTCCCTACTATGATGGTGTGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028551.4 |
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