RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031103

Ensembl transcript IDs: ENSMUST00000033429.9, ENSMUST00000114958.8, ENSMUST00000140486.2

Found 305 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTACTCCCTAGTGCTCTTGAAGGCCCTGGTCTGGTGCCAGATGCTTaGACTGGGCACACTTTGGTCAGAGCGATGTCAAATAGGCCTGGG +
Preference number: 1 (lower is better)
Translates to: LLPSALEGPGLVPDA*TGHTLVRAMSNRPG
Trigger: CCCAGGCCTATTTGACATCGCTCTGACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 90 bp AAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGTaGGACTGTATGGCTGGAGCTAGCCTTGCCACCCCACTAGCCTCA +
Preference number: 1 (lower is better)
Translates to: KKQRATVRARGWESE*DCMAGASLATPLAS
Trigger: TGAGGCTAGTGGGGTGGCAAGGCTAGCTCCAGCCATACAGTCTCACTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 90 bp GATCAGCAGTTTAAGGACTGGCCTAGTCTGCAGGCCAGGACTCGCTaGAGGCTTTTTAGCAGAGGAAGGCCAGAGCAAGTAGCCTGCCAG +
Preference number: 1 (lower is better)
Translates to: DQQFKDWPSLQARTR*RLFSRGRPEQVACQ
Trigger: CTGGCAGGCTACTTGCTCTGGCCTTCCTCTGCTAAAAAGCCTTCAGCGAGTCCTGGCCTGCAGACTAGGCCAGTCCTTAAACTGCTGATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 90 bp AGGAGGGAGTCACATATCAGCCGCTGGGACGTGAGGACCATCACTTaGCTCCTGACTCCATTAGGCAGGCCATCACAAAAGCAGGGGGAT +
Preference number: 1 (lower is better)
Translates to: RRESHISRWDVRTIT*LLTPLGRPSQKQGD
Trigger: ATCCCCCTGCTTTTGTGATGGCCTGCCTAATGGAGTCAGGAGTCAAGTGATGGTCCTCACGTCCCAGCGGCTGATATGTGACTCCCTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 90 bp GGGGGATTGCTGCCACCTGACTCTGGTTCAAGGAAATCTGTCTCCTaGGGTTCTCCTGTAAGCCTCTTGCAGAACGCTTGTCAGCAAGGG +
Preference number: 1 (lower is better)
Translates to: GGLLPPDSGSRKSVS*GSPVSLLQNACQQG
Trigger: CCCTTGCTGACAAGCGTTCTGCAAGAGGCTTACAGGAGAACCTCAGGAGACAGATTTCCTTGAACCAGAGTCAGGTGGCAGCAATCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp AGTATGACCAGGCCTAACTCGTCCTGTGAAGCTGCTGACCAGATCTaGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCACCA +
Preference number: 1 (lower is better)
Translates to: SMTRPNSSCEAADQI*PQAASWLVDFPPSP
Trigger: TGGTGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGCAGCTTCACAGGACGAGTTAGGCCTGGTCATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 90 bp CAAGAGCACATCTACTCCCTAGTGCTCTTGAAGGCCCTGGTCTGGTaGCAGATGCTTGAACTGGGCACACTTTGGTCAGAGCGATGTCAA +
Preference number: 1 (lower is better)
Translates to: QEHIYSLVLLKALVW*QMLELGTLWSERCQ
Trigger: TTGACATCGCTCTGACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTAGATGTGCTCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 90 bp TTGAGCTTGGAAGGTAGCACAGTTGCTAGGAGTACTCGTCACGCCTaGACAGAGTCCTGGCTTTGGTCCACAGAACCACATGGTGATCCA +
Preference number: 1 (lower is better)
Translates to: LSLEGSTVARSTRHA*TESWLWSTEPHGDP
Trigger: TGGATCACCATGTGGTTCTGTGGACCAAAGCCAGGACTCTGTGCAGGCGTGACGAGTACTCCTAGCAACTGTGCTACCTTCCAAGCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 90 bp CTCCTGACTCCATTAGGCAGGCCATCACAAAAGCAGGGGGATTGCTaGCACCTGACTCTGGTTCAAGGAAATCTGTCTCCTGAGGTTCTC +
Preference number: 1 (lower is better)
Translates to: LLTPLGRPSQKQGDC*HLTLVQGNLSPEVL
Trigger: GAGAACCTCAGGAGACAGATTTCCTTGAACCAGAGTCAGGTGGCAGCAATCCCCCTGCTTTTGTGATGGCCTGCCTAATGGAGTCAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp TTCCAAGAGCACATCTACTCCCTAGTGCTCTTGAAGGCCCTGGTCTaGTGCCAGATGCTTGAACTGGGCACACTTTGGTCAGAGCGATGT +
Preference number: 1 (lower is better)
Translates to: FQEHIYSLVLLKALV*CQMLELGTLWSERC
Trigger: ACATCGCTCTGACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTAGATGTGCTCTTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 90 bp AACAGACATTTCAGCGCCAATTGCTGGGAATGTAGCAAACACACCTaGATAGAGCCACAGATGGCTCCTTCCTCCAGGGAAGGAGAGGGA +
Preference number: 1 (lower is better)
Translates to: NRHFSANCWECSKHT*IEPQMAPSSREGEG
Trigger: TCCCTCTCCTTCCCTGGAGGAAGGAGCCATCTGTGGCTCTATGCAGGTGTGTTTGCTACATTCCCAGCAATTGGCGCTGAAATGTCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp TTCTCCTACCTAGACCTTTTCCAGCTCTGTGACACCTCTATAGACTaGGAGGAGGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGC +
Preference number: 1 (lower is better)
Translates to: FSYLDLFQLCDTSID*EEGHSTSSFQSQKG
Trigger: GCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCCTCCTCCCAGTCTATAGAGGTGTCACAGAGCTGGAAAAGGTCTAGGTAGGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp ACAGTTGCTAGGAGTACTCGTCACGCCTGCACAGAGTCCTGGCTTTaGTCCACAGAACCACATGGTGATCCACATGTGAGAACAAGGAAG +
Preference number: 1 (lower is better)
Translates to: TVARSTRHACTESWL*STEPHGDPHVRTRK
Trigger: CTTCCTTGTTCTCACATGTGGATCACCATGTGGTTCTGTGGACCAAAGCCAGGACTCTGTGCAGGCGTGACGAGTACTCCTAGCAACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp GTGAAGCTGCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTaGATTTCCCTCCATCACCAAGTCAGCTCATTTTCATTCCAAGAG +
Preference number: 1 (lower is better)
Translates to: VKLLTRSGHKLLPGL*ISLHHQVSSFSFQE
Trigger: CTCTTGGAATGAAAATGAGCTGACTTGGTGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGCAGCTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp TCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGCAGACTCATaGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTC +
Preference number: 1 (lower is better)
Translates to: SGELFPETEKRKADS*ADRSCRNPCVLAPV
Trigger: GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGCTTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 90 bp TATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAGCTCTGTaGCACCTCTATAGACTGGGAGGAGGGGCATTCCACCAGTTCCTT +
Preference number: 1 (lower is better)
Translates to: YAPIEVLLPRPFPAL*HLYRLGGGAFHQFL
Trigger: AAGGAACTGGTGGAATGCCCCTCCTCCCAGTCTATAGAGGTGTCACAGAGCTGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp ACCTCAAAAGTTTGCTTCCCAGCTCTCATCAGATCAAACAGTAACTaGTCAGGGATGCTCATCTGCGTTATAGTATGCCCAGTGTTGTGG +
Preference number: 1 (lower is better)
Translates to: TSKVCFPALIRSNSN*SGMLICVIVCPVLW
Trigger: CCACAACACTGGGCATACTATAACGCAGATGAGCATCCCTGACCAGTTACTGTTTGATCTGATGAGAGCTGGGAAGCAAACTTTTGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp GGACCCACTAGTGAAATGCCACCGACTTCGAGCTCTTTTCCCTGGTaGGTTGTTATCAAACTTCAAATCTTTCAAGATTTACTCTCCAAG +
Preference number: 1 (lower is better)
Translates to: GPTSEMPPTSSSFPW*VVIKLQIFQDLLSK
Trigger: CTTGGAGAGTAAATCTTGAAAGATTTGAAGTTTGATAACAACCCACCAGGGAAAAGAGCTCGAAGTCGGTGGCATTTCACTAGTGGGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp AGAGCATATTGGTTAGATGGAACCCAGGAAAGAAAAGGCATTAAGTaGGAACAAGTTCAAAGACCATGGACTCCTCGAAGAGTACCTTGG +
Preference number: 1 (lower is better)
Translates to: RAYWLDGTQERKGIK*EQVQRPWTPRRVPW
Trigger: CCAAGGTACTCTTCGAGGAGTCCATGGTCTTTGAACTTGTTCCCACTTAATGCCTTTTCTTTCCTGGGTTCCATCTAACCAATATGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 90 bp TCCTGCTCTGGAGGAGCTCACAGTCTGTTGAAGGGAAACCGTACATaGACACAATCAAAGAACTACATACAATGTGCTACAATAAGAGGT +
Preference number: 1 (lower is better)
Translates to: SCSGGAHSLLKGNRT*TQSKNYIQCATIRG
Trigger: ACCTCTTATTGTAGCACATTGTATGTAGTTCTTTGATTGTGTTCATGTACGGTTTCCCTTCAACAGACTGTGAGCTCCTCCAGAGCAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp GCTTGTCAGCAAGGGTTAGTTAACCGGTTAGCTAGTTTAACACTCTaGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTTAGGATCAGAG +
Preference number: 1 (lower is better)
Translates to: ACQQGLVNRLASLTL*VRKKLNKKLSLGSE
Trigger: CTCTGATCCTAAAGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCGGTTAACTAACCCTTGCTGACAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 90 bp GTCCATCAAGTGGCAGTTACAAGTTTAAGAATTAAAGGTAAGAACTaGCTGTTCCCACTCAATTCCATCTTGAGACACAGTTTTCCATTG +
Preference number: 1 (lower is better)
Translates to: VHQVAVTSLRIKGKN*LFPLNSILRHSFPL
Trigger: CAATGGAAAACTGTGTCTCAAGATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAACTGCCACTTGATGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCTGGTGCCAGATGCTTaGACTGGGCACACTTTGGTC +
Preference number: 2 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVLVPDA*TGHTLV
Trigger: GACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp GAGGAGGGAGTCACATATCAGCCGCTGGGACGTGAGGACCATCACTaGACTCCTGACTCCATTAGGCAGGCCATCACAAAAGCAGGGGGA +
Preference number: 2 (lower is better)
Translates to: EEGVTYQPLGREDHH*TPDSIRQAITKAGG
Trigger: TCCCCCTGCTTTTGTGATGGCCTGCCTAATGGAGTCAGGAGTCAAGTGATGGTCCTCACGTCCCAGCGGCTGATATGTGACTCCCTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCTGCTTCCTGGCTTGTaGATTTCCCTCCATCACCAA +
Preference number: 2 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVLLPGL*ISLHHQ
Trigger: TTGGTGATGGAGGGAAATCCACAAGCCAGGAAGCAG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGAAGGCCCTGGTCTGGTaGCAGATGCTTGAACTGGGC +
Preference number: 2 (lower is better)
Translates to: GRNKKQRATVRARGWESEKALVW*QMLELG
Trigger: GCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTT...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACAGCCAGATGCTTGAACTaGGCACACTTTGGTCAGAGC +
Preference number: 2 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTARCLN*AHFGQS
Trigger: GCTCTGACCAAAGTGTGCCCAGTTCAAGCATCTGGC...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGCCACAAGCTGCTTCCTaGCTTGTGGATTTCCCTCCA +
Preference number: 2 (lower is better)
Translates to: GRNKKQRATVRARGWESEPQAAS*LVDFPP
Trigger: TGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGG...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp GTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTaGAAGGCCCTGGTCTGGTGCCAGATGCTTGAACTGGGCACACTT +
Preference number: 2 (lower is better)
Translates to: VSSFSFQEHIYSLVL*KALVWCQMLELGTL
Trigger: AAGTGTGCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp CCTGTGAAGCTGCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTaGTGGATTTCCCTCCATCACCAAGTCAGCTCATTTTCATTCCAA +
Preference number: 2 (lower is better)
Translates to: PVKLLTRSGHKLLPG*WISLHHQVSSFSFQ
Trigger: TTGGAATGAAAATGAGCTGACTTGGTGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGCAGCTTCACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGCCTTTTCCAGCTCTGTaGCACCTCTATAGACTGGGA +
Preference number: 2 (lower is better)
Translates to: GRNKKQRATVRARGWESEPFPAL*HLYRLG
Trigger: TCCCAGTCTATAGAGGTGTCACAGAGCTGGAAAAGG...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAAGCAAAGAGCCACTGTaGGAGCGAGAGGGTGGGAGA +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRSKEPL*EREGGR
Trigger: TCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAAAGGCCCTGGTCTGGTaGCAGATGCTTGAACTGGGC +
Preference number: 2 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPKALVW*QMLELG
Trigger: GCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTT...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGCTGCTGACCAGATCTaGCCACAAGCTGCTTCCTGG +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRAADQI*PQAASW
Trigger: CCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGCAGC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp ATGGCCTCTTGTCCCTTAGCAGTGTCCTCTCAGCATATGCACCCATaGAAGTTCTCCTACCTAGACCTTTTCCAGCTCTGTGACACCTCT +
Preference number: 2 (lower is better)
Translates to: MASCPLAVSSQHMHP*KFSYLDLFQLCDTS
Trigger: AGAGGTGTCACAGAGCTGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACTGCTAAGGGACAAGAGGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAAGTACTCGTCACGCCTaGACAGAGTCCTGGCTTTGG +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRSTRHA*TESWLW
Trigger: CCAAAGCCAGGACTCTGTGCAGGCGTGACGAGTACT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATCGGGTTCCAGCCTGGTaGCAAGGTGACTATGACAAG +
Preference number: 2 (lower is better)
Translates to: KREPKIGKEEYWITKGCYRVPAW*QGDYDK
Trigger: CTTGTCATAGTCACCTTGCCACCAGGCTGGAACCCG...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp ACTTCAAATCTTTCAAGATTTACTCTCCAAGTGCTCCCCAACTTCTaGGGCCCTGCCACGATTGGGGAACTAAAGCTAGGCCTAGACCAG +
Preference number: 2 (lower is better)
Translates to: TSNLSRFTLQVLPNF*GPATIGELKLGLDQ
Trigger: CTGGTCTAGGCCTAGCTTTAGTTCCCCAATCGTGGCAGGGCCCAAGAAGTTGGGGAGCACTTGGAGAGTAAATCTTGAAAGATTTGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTAGGGGCAGGGTCAAGTaGACAGAGCCCACCAGACAG +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSRGRVK*TEPTRQ
Trigger: CTGTCTGGTGGGCTCTGTGCACTTGACCCTGCCCCT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCACCACAAGCTGCTTCCTaGCTTGTGGATTTCCCTCCA +
Preference number: 2 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPPQAAS*LVDFPP
Trigger: TGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGG...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp GGGAGGAGGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATaGTTGCTTGCCAACAACAACAAGAAAAAGTTACAGAGTGCTTTC +
Preference number: 2 (lower is better)
Translates to: GRRGIPPVPSSLRKA*LLANNNKKKLQSAF
Trigger: GAAAGCACTCTGTAACTTTTTCTTGTTGTTGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCCTCCTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAACTAGCCTCAGCAACTaGGGACAGGTGGAATTTCTC +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRTSLSN*GQVEFL
Trigger: GAGAAATTCCACCTGTCCTCAGTTGCTGAGGCTAGT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGGGTGGGAGAGTGAGTaGGACTGTATGGCTGGAGCT +
Preference number: 2 (lower is better)
Translates to: SAERLRSGELFPETEKRKGWESE*DCMAGA
Trigger: AGCTCCAGCCATACAGTCTCACTCACTCTCCCACCC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGAGAGGGTGGGAGAGTaGGTGAGACTGTATGGCTGG +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSERVGE*VRLYGW
Trigger: CCAGCCATACAGTCTCACTCACTCTCCCACCCTCTC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTAGCAAAGAGCCACTGTaGGAGCGAGAGGGTGGGAGA +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSSKEPL*EREGGR
Trigger: TCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTATTGAAGGCCCTGGTCTaGTGCCAGATGCTTGAACTG +
Preference number: 2 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLLKALV*CQMLEL
Trigger: CAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAA...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGCAACTGAGGACAGGTaGAATTTCTCAGCGCAGACA +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRATEDR*NFSAQT
Trigger: TGTCTGCGCTGAGAAATTCCACCTGTCCTCAGTTGC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAACTTGGTTCTGGGTGTaGCATCTCCACACATTGTTC +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRTWFWV*HLHTLF
Trigger: GAACAATGTGTGGAGATGTCACACCCAGAACCAAGT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCAGGGGCAGGGTCAAGTaGACAGAGCCCACCAGACAG +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIRGRVK*TEPTRQ
Trigger: CTGTCTGGTGGGCTCTGTGCACTTGACCCTGCCCCT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACAAAATGGAGACCCTTaGAGAACACCCACACACAGA +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRQNGDP*RTPTHR
Trigger: TCTGTGTGTGGGTGTTCTCCAAGGGTCTCCATTTTG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAATACAGACCCACAAGTaGACACAGATGCATACGAAG +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRIQTHK*TQMHTK
Trigger: CTTCGTATGCATCTGTGTGCACTTGTGGGTCTGTAT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACATTTCAGCGCCAATTaGTGGGAATGTAGCAAACAC +
Preference number: 2 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRHFSAN*WECSKH
Trigger: GTGTTTGCTACATTCCCAGCAATTGGCGCTGAAATG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp ACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATaGTCAAGCATAGGGCTGATTTTATACAAACAGCCAAAAGCCCTG +
Preference number: 2 (lower is better)
Translates to: TQDREGRVLDHKGLL*SSIGLILYKQPKAL
Trigger: CAGGGCTTTTGGCTGTTTGTATAAAATCAGCCCTATGCTTGACAATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCCTGGTGCCAGATGCTTaGACTGGGCACACTTTGGTC +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSILVPDA*TGHTLV
Trigger: GACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAG...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGATTTACTCTCCAAGTaGTCCCCAACTTCTTGGGCC +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSDLLSK*SPTSWA
Trigger: GGCCCAAGAAGTTGGGGAGCACTTGGAGAGTAAATC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGACCCACTAGTGAAATaGCACCGACTTCGAGCTCTT +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSDPLVK*HRLRAL
Trigger: AAGAGCTCGAAGTCGGTGGCATTTCACTAGTGGGTC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTCTGCTTCCTGGCTTGTaGATTTCCCTCCATCACCAA +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSLLPGL*ISLHHQ
Trigger: TTGGTGATGGAGGGAAATCCACAAGCCAGGAAGCAG...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 90 bp CCACTAGTGAAATGCCACCGACTTCGAGCTCTTTTCCCTGGTGGGTaGTTATCAAACTTCAAATCTTTCAAGATTTACTCTCCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: PLVKCHRLRALFPGG*LSNFKSFKIYSPSA
Trigger: AGCACTTGGAGAGTAAATCTTGAAAGATTTGAAGTTTGATAACAACCCACCAGGGAAAAGAGCTCGAAGTCGGTGGCATTTCACTAGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTCAGGGATGCTCATCTaGGTTATAGTATGCCCAGTG +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSSGMLI*VIVCPV
Trigger: CACTGGGCATACTATAACGCAGATGAGCATCCCTGA...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCGCCAGATGCTTGAACTaGGCACACTTTGGTCAGAGC +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIARCLN*AHFGQS
Trigger: GCTCTGACCAAAGTGTGCCCAGTTCAAGCATCTGGC...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAAATGCTTCACAATTTTaGCCGGTGGGTCATACTTTT +
Preference number: 2 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLNASQF*PVGHTF
Trigger: AAAAGTATGACCCACCGGGCAAAATTGTGAAGCATT...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGCTACCTCAAAAGTTTaGTTCCCAGCTCTCATCAGA +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSATSKV*FPALIR
Trigger: TCTGATGAGAGCTGGGAAGCAAACTTTTGAGGTAGC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCAGAAAAGCAGACTCATaGGCTGACAGGAGCTGTAGG +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIRKADS*ADRSCR
Trigger: CCTACAGCTCCTGTCAGCCCATGAGTCTGCTTTTCT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR TCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCACTTGGTTCTGGGTGTaGCATCTCCACACATTGTTC +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSITWFWV*HLHTLF
Trigger: GAACAATGTGTGGAGATGTCACACCCAGAACCAAGT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTAATGCTTCACAATTTTaGCCGGTGGGTCATACTTTT +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSNASQF*PVGHTF
Trigger: AAAAGTATGACCCACCGGGCAAAATTGTGAAGCATT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTCAGAAAGGCATTGTTaGTTGCCAACAACAACAAGA +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSSERHC*LPTTTR
Trigger: TCTTGTTGTTGTTGGCAAGCAACAATGCCTTTCTGA...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCAGAAGGTCAGCAGAATaGTGGCATCATGAACAGAAG +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIRRSAE*WHHEQK
Trigger: CTTCTGTTCATGATGCCACCATTCTGCTGACCTTCT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCCTAGAAAATCCTGAGTaGGTGGGGATCAGCAGTTTA +
Preference number: 2 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSILENPE*VGISSL
Trigger: TAAACTGCTGATCCCCACCCACTCAGGATTTTCTAG...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTATTAAAGGTAAGAACTaGCTGTTCCCACTCAATTCC +
Preference number: 2 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSIKGKN*LFPLNS
Trigger: GGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAAT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR GCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGAAAAAGTTACAGAGTaGTTTCTCTTAAAACTGCCT +
Preference number: 2 (lower is better)
Translates to: SAERLRSGELFPETEKRKEKVTE*FLLKLP
Trigger: AGGCAGTTTTAAGAGAAAGCACTCTGTAACTTTTTC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 72 bp TGGGTGGGGATCAGCAGTTTAAGGACTGGCCTAGTCTaGAGGCCAGGACTCGCTGAAGGCTTTTTAGCAGAG +
Preference number: 3 (lower is better)
Translates to: WVGISSLRTGLV*RPGLAEGFLAE
Trigger: CTCTGCTAAAAAGCCTTCAGCGAGTCCTGGCCTGCAGACTAGGCCAGTCCTTAAACTGCTGATCCCCACCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp AGGCCTAACTCGTCCTGTGAAGCTGCTGACCAGATCTaGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCT +
Preference number: 3 (lower is better)
Translates to: RPNSSCEAADQI*PQAASWLVDFP
Trigger: AGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGCAGCTTCACAGGACGAGTTAGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp TGCCAGAGAGAAGTGCTGAGAAGTCACATTGGGAAGTaGGACGTTAAGAGGCATGGGCTAGGCTGGAGGCTC +
Preference number: 3 (lower is better)
Translates to: CQREVLRSHIGK*DVKRHGLGWRL
Trigger: GAGCCTCCAGCCTAGCCCATGCCTCTTAACGTCCCACTTCCCAATGTGACTTCTCAGCACTTCTCTCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCAGCATATGCACCCATaGAAGTTCTCCTACCTAGAC +
Preference number: 3 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVQHMHP*KFSYLD
Trigger: GTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 72 bp GAAGGTAGCACAGTTGCTAGGAGTACTCGTCACGCCTaGACAGAGTCCTGGCTTTGGTCCACAGAACCACAT +
Preference number: 3 (lower is better)
Translates to: EGSTVARSTRHA*TESWLWSTEPH
Trigger: ATGTGGTTCTGTGGACCAAAGCCAGGACTCTGTGCAGGCGTGACGAGTACTCCTAGCAACTGTGCTACCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp CACATCTACTCCCTAGTGCTCTTGAAGGCCCTGGTCTaGTGCCAGATGCTTGAACTGGGCACACTTTGGTCA +
Preference number: 3 (lower is better)
Translates to: HIYSLVLLKALV*CQMLELGTLWS
Trigger: TGACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTAGATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp AGGAGTACTCGTCACGCCTGCACAGAGTCCTGGCTTTaGTCCACAGAACCACATGGTGATCCACATGTGAGA +
Preference number: 3 (lower is better)
Translates to: RSTRHACTESWL*STEPHGDPHVR
Trigger: TCTCACATGTGGATCACCATGTGGTTCTGTGGACCAAAGCCAGGACTCTGTGCAGGCGTGACGAGTACTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp GTTGCTAGGAGTACTCGTCACGCCTGCACAGAGTCCTaGCTTTGGTCCACAGAACCACATGGTGATCCACAT +
Preference number: 3 (lower is better)
Translates to: VARSTRHACTES*LWSTEPHGDPH
Trigger: ATGTGGATCACCATGTGGTTCTGTGGACCAAAGCCAGGACTCTGTGCAGGCGTGACGAGTACTCCTAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp AGTGCTCTTGAAGGCCCTGGTCTGGTGCCAGATGCTTaGACTGGGCACACTTTGGTCAGAGCGATGTCAAAT +
Preference number: 3 (lower is better)
Translates to: SALEGPGLVPDA*TGHTLVRAMSN
Trigger: ATTTGACATCGCTCTGACCAAAGTGTGCCCAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp TTTAAGGACTGGCCTAGTCTGCAGGCCAGGACTCGCTaGAGGCTTTTTAGCAGAGGAAGGCCAGAGCAAGTA +
Preference number: 3 (lower is better)
Translates to: FKDWPSLQARTR*RLFSRGRPEQV
Trigger: TACTTGCTCTGGCCTTCCTCTGCTAAAAAGCCTTCAGCGAGTCCTGGCCTGCAGACTAGGCCAGTCCTTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp TCACATATCAGCCGCTGGGACGTGAGGACCATCACTTaGCTCCTGACTCCATTAGGCAGGCCATCACAAAAG +
Preference number: 3 (lower is better)
Translates to: SHISRWDVRTIT*LLTPLGRPSQK
Trigger: CTTTTGTGATGGCCTGCCTAATGGAGTCAGGAGTCAAGTGATGGTCCTCACGTCCCAGCGGCTGATATGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 72 bp TTCAGCGCCAATTGCTGGGAATGTAGCAAACACACCTaGATAGAGCCACAGATGGCTCCTTCCTCCAGGGAA +
Preference number: 3 (lower is better)
Translates to: FSANCWECSKHT*IEPQMAPSSRE
Trigger: TTCCCTGGAGGAAGGAGCCATCTGTGGCTCTATGCAGGTGTGTTTGCTACATTCCCAGCAATTGGCGCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 72 bp ATTTACTCTCCAAGTGCTCCCCAACTTCTTGGGCCCTaGCACGATTGGGGAACTAAAGCTAGGCCTAGACCA +
Preference number: 3 (lower is better)
Translates to: IYSPSAPQLLGP*HDWGTKARPRP
Trigger: TGGTCTAGGCCTAGCTTTAGTTCCCCAATCGTGGCAGGGCCCAAGAAGTTGGGGAGCACTTGGAGAGTAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 72 bp GAGAGGGGAGGACGGCGGTCAGCTACCTCAAAAGTTTaGTTCCCAGCTCTCATCAGATCAAACAGTAACTGG +
Preference number: 3 (lower is better)
Translates to: ERGGRRSATSKV*FPALIRSNSNW
Trigger: CCAGTTACTGTTTGATCTGATGAGAGCTGGGAAGCAAACTTTTGAGGTAGCTGACCGCCGTCCTCCCCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGATACTCCCTAGTGCTCTaGAAGGCCCTGGTCTGGTGC +
Preference number: 3 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRYSLVL*KALVWC
Trigger: GCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTA...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp GTAGGAACCCATGTGTGCTCGCTCCTGTCATCTCAGTaGAGCGAGAATCGGGTTAGATGTGATGGGCAGAAA +
Preference number: 3 (lower is better)
Translates to: VGTHVCSLLSSQ*SENRVRCDGQK
Trigger: TTTCTGCCCATCACATCTAACCCGATTCTCGCTTCACTGAGATGACAGGAGCGAGCACACATGGGTTCCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp GGAACTAAAGCTAGGCCTAGACCAGCTAGAAAATCCTaGGTGGGTGGGGATCAGCAGTTTAAGGACTGGCCT +
Preference number: 3 (lower is better)
Translates to: GTKARPRPARKS*VGGDQQFKDWP
Trigger: AGGCCAGTCCTTAAACTGCTGATCCCCACCCACTCAGGATTTTCTAGCTGGTCTAGGCCTAGCTTTAGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp CTAAAGCTAGGCCTAGACCAGCTAGAAAATCCTGAGTaGGTGGGGATCAGCAGTTTAAGGACTGGCCTAGTC +
Preference number: 3 (lower is better)
Translates to: LKLGLDQLENPE*VGISSLRTGLV
Trigger: GACTAGGCCAGTCCTTAAACTGCTGATCCCCACCCACTCAGGATTTTCTAGCTGGTCTAGGCCTAGCTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp ATTGAAGTTCTCCTACCTAGACCTTTTCCAGCTCTGTaGCACCTCTATAGACTGGGAGGAGGGGCATTCCAC +
Preference number: 3 (lower is better)
Translates to: IEVLLPRPFPAL*HLYRLGGGAFH
Trigger: GTGGAATGCCCCTCCTCCCAGTCTATAGAGGTGTCACAGAGCTGGAAAAGGTCTAGGTAGGAGAACTTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTACTCCCTAGTGCTCTaGAAGGCCCTGGTCTGGTGC +
Preference number: 3 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSYSLVL*KALVWC
Trigger: GCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTA...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR GCA 72 bp ATCAAACTTCAAATCTTTCAAGATTTACTCTCCAAGTaGTCCCCAACTTCTTGGGCCCTGCCACGATTGGGG +
Preference number: 3 (lower is better)
Translates to: IKLQIFQDLLSK*SPTSWALPRLG
Trigger: CCCCAATCGTGGCAGGGCCCAAGAAGTTGGGGAGCACTTGGAGAGTAAATCTTGAAAGATTTGAAGTTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp AGAAAAGGCATTAAGTGGGAACAAGTTCAAAGACCATaGACTCCTCGAAGAGTACCTTGGCATGGGGTGAGT +
Preference number: 3 (lower is better)
Translates to: RKGIKWEQVQRP*TPRRVPWHGVS
Trigger: ACTCACCCCATGCCAAGGTACTCTTCGAGGAGTCCATGGTCTTTGAACTTGTTCCCACTTAATGCCTTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTAAGCTGCTTCCTGGCTaGTGGATTTCCCTCCATCAC +
Preference number: 3 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSKLLPG*WISLHH
Trigger: GTGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCTCCTCGAAGAGTACCTaGGCATGGGGTGAGTGGGGA +
Preference number: 3 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSISSKST*AWGEWG
Trigger: TCCCCACTCACCCCATGCCAAGGTACTCTTCGAGGA...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTACAAAATGGAGACCCTaGGAGAACACCCACACACAG +
Preference number: 3 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSTKWRP*ENTHTQ
Trigger: CTGTGTGTGGGTGTTCTCCAAGGGTCTCCATTTTGT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTAGCTACCTCAAAAGTTaGCTTCCCAGCTCTCATCAG +
Preference number: 3 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSSYLKS*LPSSHQ
Trigger: CTGATGAGAGCTGGGAAGCAAACTTTTGAGGTAGCT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR TCA 72 bp GGAGGAGCTCACAGTCTGTTGAAGGGAAACCGTACATaGACACAATCAAAGAACTACATACAATGTGCTACA +
Preference number: 3 (lower is better)
Translates to: GGAHSLLKGNRT*TQSKNYIQCAT
Trigger: TGTAGCACATTGTATGTAGTTCTTTGATTGTGTTCATGTACGGTTTCCCTTCAACAGACTGTGAGCTCCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp ACTAGTGAAATGCCACCGACTTCGAGCTCTTTTCCCTaGTGGGTTGTTATCAAACTTCAAATCTTTCAAGAT +
Preference number: 3 (lower is better)
Translates to: TSEMPPTSSSFP*WVVIKLQIFQD
Trigger: ATCTTGAAAGATTTGAAGTTTGATAACAACCCACCAGGGAAAAGAGCTCGAAGTCGGTGGCATTTCACTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR-3UTR CAA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCCTCAGAAAGGCATTGTaGCTTGCCAACAACAACAAG +
Preference number: 3 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSILRKAL*LANNNK
Trigger: CTTGTTGTTGTTGGCAAGCAACAATGCCTTTCTGAG...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CCA 72 bp GTGGCAGTTACAAGTTTAAGAATTAAAGGTAAGAACTaGCTGTTCCCACTCAATTCCATCTTGAGACACAGT +
Preference number: 3 (lower is better)
Translates to: VAVTSLRIKGKN*LFPLNSILRHS
Trigger: ACTGTGTCTCAAGATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAACTGCCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCACAGTCCCAGGGGGCTaGGAGCTAGGCCCTGCTGAC +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVTVPGG*ELGPAD
Trigger: GTCAGCAGGGCCTAGCTCTCAGCCCCCTGGGACTGT...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCAGGAGCTGGGTTGCTCTaGGGGTTGGCCCCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSGAGLL*GLAPAR
Trigger: TCTGGCTGGGGCCAACCCTCAGAGCAACCCAGCTCC...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCGGCTGGCAAGCATGGTaGAGGTGGTGGGAACCTCCT +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVGWQAW*RWWEPP
Trigger: AGGAGGTTCCCACCACCTCCACCATGCTTGCCAGCC...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCAGGGATGGAGCTGGGTTaGTCTGAGGGTTGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSGMELG*SEGWPQ
Trigger: CTGGGGCCAACCCTCAGAGCAACCCAGCTCCATCCC...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCGCACTTCCGGTGAGCTaGAGATCTGCTTCTCATCCA +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVALPVS*RSASHP
Trigger: TGGATGAGAAGCAGATCTTCAGCTCACCGGAAGTGC...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACACACGGCTGGGAACACTaGAGGGTCTTCCAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTHGWEH*RVFQLV
Trigger: CACCAGCTGGAAGACCCTTCAGTGTTCCCAGCCGTG...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCAGGTGTTTCTGTCTTaGAGAAGAGCCAGGAGGAAC +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVQVFLS*RRARRN
Trigger: GTTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATCCTCGGGGGAGGCTCTaGTTCCGACCCTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: KREPKIGKEEYWITKGCYPRGRL*FRPWSW
Trigger: CCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGG...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCACAAGCATGGTGGAGGTaGTGGGAACCTCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSQAWWR*WEPPHP
Trigger: TGGATGAGGAGGTTCCCACCACCTCCACCATGCTTG...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCGGTTCTCTTGCAAATTaGTGTTCAGGGGGAAGGAGG +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVGSLAN*CSGGRR
Trigger: CCTCCTTCCCCCTGAACACCAATTTGCAAGAGAACC...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGGCCCCAGCCAGAAGTTaGGGGAGACCACTGAGGATC +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESEAPARS*GRPLRI
Trigger: GATCCTCAGTGGTCTCCCCCAACTTCTGGCTGGGGC...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGGATGGTCTGCAGGGTaGCAGTGGAGCCAGGCCCCA +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRGWSAG*QWSQAP
Trigger: TGGGGCCTGGCTCCACTGTCACCCTGCAGACCATCC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGGAGCTGGGTTGCTCTaGGGGTTGGCCCCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLGAGLL*GLAPAR
Trigger: TCTGGCTGGGGCCAACCCTCAGAGCAACCCAGCTCC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAACAGTCCCAGGGGGCTaGGAGCTAGGCCCTGCTGAC +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPTVPGG*ELGPAD
Trigger: GTCAGCAGGGCCTAGCTCTCAGCCCCCTGGGACTGT...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCGGTGAGCTGAAGATCTaGTTCTCATCCAGGACATCA +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVGELKI*FSSRTS
Trigger: TGATGTCCTGGATGAGAAGCAGATCTTCAGCTCACC...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGGCTTGCCCCACAGCTTaGACACAGCCTTGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESEACPTA*TQPWSP
Trigger: TGGACTCCAAGGCTGTGTCCAAGCTGTGGGGCAAGC...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCTAGGTGGATGTTACTaGGTGCTGGAGAAGAACTCA +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVLGGCY*VLEKNS
Trigger: TGAGTTCTTCTCCAGCACCCAGTAACATCCACCTAG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCATCGGTTTCTCTTCCGTaGCTTCCCCATCTTCCTAAG +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSSVSLP*LPHLPK
Trigger: CTTAGGAAGATGGGGAAGGCACGGAAGAGAAACCGA...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGGGATGGAGCTGGGTTaGTCTGAGGGTTGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLGMELG*SEGWPQ
Trigger: CTGGGGCCAACCCTCAGAGCAACCCAGCTCCATCCC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGCTCCAGGCTTGCAGATaGCTGGAGACCAGTGTGTTG +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESELQACR*LETSVL
Trigger: CAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAG...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCAGGTTCTCTTGCAAATTaGTGTTCAGGGGGAAGGAGG +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSGSLAN*CSGGRR
Trigger: CCTCCTTCCCCCTGAACACCAATTTGCAAGAGAACC...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACAACCTATGACCTGGGATaGAGCTGGGTTGCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTTYDLG*SWVALR
Trigger: CCTCAGAGCAACCCAGCTCCATCCCAGGTCATAGGT...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp GTCACATATCAGCCGCTGGGACGTGAGGACCATCACTaGACTCCTGACTCCATTAGGCAGGCCATCACAAAA +
Preference number: 4 (lower is better)
Translates to: VTYQPLGREDHH*TPDSIRQAITK
Trigger: TTTTGTGATGGCCTGCCTAATGGAGTCAGGAGTCAAGTGATGGTCCTCACGTCCCAGCGGCTGATATGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCATCTGATCCTGTGTCATaGACAAGGTCCTGTCCCTTA +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSSDPVS*TRSCPL
Trigger: TAAGGGACAGGACCTTGTGCATGACACAGGATCAGA...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGAGGGGGAAGGAGGTCTaGAAAGTGAAGGTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESERGKEV*KVKVSL
Trigger: CAAGGACACCTTCACTTTGCAGACCTCCTTCCCCCT...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACAGCCACCTGGTTCTCTTaGAAATTGGTGTTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTATWFS*KLVFRG
Trigger: CCCCCTGAACACCAATTTGCAAGAGAACCAGGTGGC...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCTACTTCGGTTGTTCTTaGTCTTTCGGTTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVYFGCS*SFGFSS
Trigger: GGAAGAGAAACCGAAAGACCAAGAACAACCGAAGTA...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGATACTGGTCGAGGGTGTaGAGGAAGTCGAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRYWSRV*RKSRPG
Trigger: CCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTA...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGATTCCGACCCTGGAGCTaGCTCTCCGGATGGTACTGG +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRFRPWS*LSGWYW
Trigger: CCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAA...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGAGGCTTGCAGATGGCTaGAGACCAGTGTGTTGGACT +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESERLADG*RPVCWT
Trigger: AGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCT...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGGCTGGCAAGCATGGTaGAGGTGGTGGGAACCTCCT +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLGWQAW*RWWEPP
Trigger: AGGAGGTTCCCACCACCTCCACCATGCTTGCCAGCC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGTGGGCTGGCAAGCATaGTGGAGGTGGTGGGAACCT +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLVGWQA*WRWWEP
Trigger: AGGTTCCCACCACCTCCACCATGCTTGCCAGCCCAC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGTTGGTGAGCCTGGCCTaGCTCTGTAGTGGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLLVSLA*LCSGLA
Trigger: TGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAA...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCATTGGTGAGCCTGGCCTaGCTCTGTAGTGGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPLVSLA*LCSGLA
Trigger: TGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAA...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCGATGTTACTGGGTGCTaGAGAAGAACTCACAGTTTT +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVDVTGC*RRTHSF
Trigger: AAAACTGTGAGTTCTTCTCCAGCACCCAGTAACATC...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGGTTGCTCTGAGGGTTaGCCCCAGCCAGAAGTTGGG +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRGCSEG*PQPEVG
Trigger: CCCAACTTCTGGCTGGGGCCAACCCTCAGAGCAACC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATAGCCCAACAGTGGGGTaGCTAGGGGGAGAGAGAGTC +
Preference number: 4 (lower is better)
Translates to: KREPKIGKEEYWITKGCYSPTVG*LGGERV
Trigger: GACTCTCTCTCCCCCTAGCCACCCCACTGTTGGGCT...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACATGGAGTCCACCAACTTaGAGATGCCCTTCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTWSPPT*RCPSLS
Trigger: AGAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCA...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGGATGGTCTGCAGGGTaGCAGTGGAGCCAGGCCCCA +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKGWSAG*QWSQAP
Trigger: TGGGGCCTGGCTCCACTGTCACCCTGCAGACCATCC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCACAGATAAATGGTGCTaGCTTTGCCATCTTTGGATT +
Preference number: 4 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVTDKWC*LCHLWI
Trigger: AATCCAAAGATGGCAAAGGCAGCACCATTTATCTGT...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGCAGGTGTTTCTGTCTTaGAGAAGAGCCAGGAGGAAC +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESEQVFLS*RRARRN
Trigger: GTTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTG...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATTGGGGCCCCTTGGGTTaGCACCTGGTTCTCTTGCAA +
Preference number: 4 (lower is better)
Translates to: KREPKIGKEEYWITKGCYWGPLG*HLVLLQ
Trigger: TTGCAAGAGAACCAGGTGGCAACCCAAGGGGCCCCA...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGTGGGGCCCCTTGGGTTaGCACCTGGTTCTCTTGCAA +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLWGPLG*HLVLLQ
Trigger: TTGCAAGAGAACCAGGTGGCAACCCAAGGGGCCCCA...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGCTTGCCCCACAGCTTaGACACAGCCTTGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRACPTA*TQPWSP
Trigger: TGGACTCCAAGGCTGTGTCCAAGCTGTGGGGCAAGC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAGGTTGCTCTGAGGGTTaGCCCCAGCCAGAAGTTGGG +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLGCSEG*PQPEVG
Trigger: CCCAACTTCTGGCTGGGGCCAACCCTCAGAGCAACC...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATCCAGCACCTATGACCTaGGATGGAGCTGGGTTGCTC +
Preference number: 4 (lower is better)
Translates to: KREPKIGKEEYWITKGCYPAPMT*DGAGLL
Trigger: GAGCAACCCAGCTCCATCCCAGGTCATAGGTGCTGG...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGCCAGCACCTATGACCTaGGATGGAGCTGGGTTGCTC +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLPAPMT*DGAGLL
Trigger: GAGCAACCCAGCTCCATCCCAGGTCATAGGTGCTGG...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAAGCCCAACAGTGGGGTaGCTAGGGGGAGAGAGAGTC +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLSPTVG*LGGERV
Trigger: GACTCTCTCTCCCCCTAGCCACCCCACTGTTGGGCT...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp CTTTCAAGATTTACTCTCCAAGTGCTCCCCAACTTCTaGGGCCCTGCCACGATTGGGGAACTAAAGCTAGGC +
Preference number: 4 (lower is better)
Translates to: LSRFTLQVLPNF*GPATIGELKLG
Trigger: GCCTAGCTTTAGTTCCCCAATCGTGGCAGGGCCCAAGAAGTTGGGGAGCACTTGGAGAGTAAATCTTGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp ACAAGTTCAAAGACCATGGACTCCTCGAAGAGTACCTaGGCATGGGGTGAGTGGGGAATATCAGAGAGGACC +
Preference number: 4 (lower is better)
Translates to: TSSKTMDSSKST*AWGEWGISERT
Trigger: GGTCCTCTCTGATATTCCCCACTCACCCCATGCCAAGGTACTCTTCGAGGAGTCCATGGTCTTTGAACTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCAAAATGGTGCTGCCTTTaGCATCTTTGGATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSKWCCL*HLWISS
Trigger: GGAAGAAATCCAAAGATGGCAAAGGCAGCACCATTT...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GGCAGAAATAAAAAGCAAAGAGCCACTGTGAGAGCGAGAGGGTGGGAGAGTGAGCCCACAGATAAATGGTaGTGCCTTTGCCATCTTTGG +
Preference number: 4 (lower is better)
Translates to: GRNKKQRATVRARGWESEPTDKW*CLCHLW
Trigger: CCAAAGATGGCAAAGGCAGCACCATTTATCTGTGGG...CTCACTCTCCCACCCTCTCGCTCTCACAGTGGCTCTTTGCTTTTTATTTCTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCCCTCGGGGGAGGCTCTaGTTCCGACCCTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIPRGRL*FRPWSW
Trigger: CCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGG...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAACCTATGACCTGGGATaGAGCTGGGTTGCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPTYDLG*SWVALR
Trigger: CCTCAGAGCAACCCAGCTCCATCCCAGGTCATAGGT...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp TTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTaGAAGGCCCTGGTCTGGTGCCAGATGCTTGAACTG +
Preference number: 4 (lower is better)
Translates to: FSFQEHIYSLVL*KALVWCQMLEL
Trigger: CAGTTCAAGCATCTGGCACCAGACCAGGGCCTTCAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAACACGGCTGGGAACACTaGAGGGTCTTCCAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKHGWEH*RVFQLV
Trigger: CACCAGCTGGAAGACCCTTCAGTGTTCCCAGCCGTG...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAAACTCACAGTTTTGGTaGGCCTGGCCTGGCTCTGTA +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRNSQFW*AWPGSV
Trigger: TACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGAACTCACAGTTTTGGTaGGCCTGGCCTGGCTCTGTA +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLNSQFW*AWPGSV
Trigger: TACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTT...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAACTGACCCAGCACCTATaGCCTGGGATGGAGCTGGGT +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKLTQHL*PGMELG
Trigger: ACCCAGCTCCATCCCAGGTCATAGGTGCTGGGTCAG...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACAATGCCCTTCTCTCTCTaGGTCCACTTAATGTACTTG +
Preference number: 4 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTMPFSL*VHLMYL
Trigger: CAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCAT...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAAGGGGGAAGGAGGTCTaGAAAGTGAAGGTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRRGKEV*KVKVSL
Trigger: CAAGGACACCTTCACTTTGCAGACCTCCTTCCCCCT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAGCCACCTGGTTCTCTTaGAAATTGGTGTTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPATWFS*KLVFRG
Trigger: CCCCCTGAACACCAATTTGCAAGAGAACCAGGTGGC...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGGCATCTCCTTGAACTaGTATACCAGCCTCTGCCCT +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRGISLN*YTSLCP
Trigger: AGGGCAGAGGCTGGTATACCAGTTCAAGGAGATGCC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTACTGGTCGAGGGTGTaGAGGAAGTCGAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSYWSRV*RKSRPG
Trigger: CCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTA...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTACTCCAGGCTTGCAGATaGCTGGAGACCAGTGTGTTG +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLLQACR*LETSVL
Trigger: CAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAG...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGTGGGCTGGCAAGCATaGTGGAGGTGGTGGGAACCT +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSVGWQA*WRWWEP
Trigger: AGGTTCCCACCACCTCCACCATGCTTGCCAGCCCAC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGGCTCTGTAGTGGGCTaGCAAGCATGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKGSVVG*QAWWRW
Trigger: CCACCTCCACCATGCTTGCCAGCCCACTACAGAGCC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAGGGGCTACTCCTAGGTaGATGTTACTGGGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLGATPR*MLLGAG
Trigger: TCCAGCACCCAGTAACATCCACCTAGGAGTAGCCCC...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGCCCCAGCCAGAAGTTaGGGGAGACCACTGAGGATC +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKAPARS*GRPLRI
Trigger: GATCCTCAGTGGTCTCCCCCAACTTCTGGCTGGGGC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACACCTGACTCGGAAGTaGCTGAAGATGACCCTGATC +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRHLTRK*LKMTLI
Trigger: GATCAGGGTCATCTTCAGCCACTTCCGAGTCAGGTG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAACAAGGCTCAGGTTATaGGAACCCCTTGAGAGCACC +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRTRLRL*EPLEST
Trigger: GGTGCTCTCAAGGGGTTCCCATAACCTGAGCCTTGT...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp TGTCCCTTAGCAGTGTCCTCTCAGCATATGCACCCATaGAAGTTCTCCTACCTAGACCTTTTCCAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: CPLAVSSQHMHP*KFSYLDLFQLC
Trigger: ACAGAGCTGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACTGCTAAGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAGCACTTCCGGTGAGCTaGAGATCTGCTTCTCATCCA +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLALPVS*RSASHP
Trigger: TGGATGAGAAGCAGATCTTCAGCTCACCGGAAGTGC...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCACTGTCAGCAAAATACTaGCTTCTAAAATCTGATCCT +
Preference number: 4 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSLSAKY*LLKSDP
Trigger: AGGATCAGATTTTAGAAGGCAGTATTTTGCTGACAG...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCATTCTCCTCCTCAGAATaGTCCTTCTGGTCACCAGCA +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPFSSSE*SFWSPA
Trigger: TGCTGGTGACCAGAAGGAGCATTCTGAGGAGGAGAA...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGATTCTCCTCCTCAGAATaGTCCTTCTGGTCACCAGCA +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRFSSSE*SFWSPA
Trigger: TGCTGGTGACCAGAAGGAGCATTCTGAGGAGGAGAA...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGTCGGTTTCTCTTCCGTaGCTTCCCCATCTTCCTAAG +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLSVSLP*LPHLPK
Trigger: CTTAGGAAGATGGGGAAGGCACGGAAGAGAAACCGA...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGAGTGTGTTGGACTTTTaGCTTCTCCCAGGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLSVLDF*LLPGRV
Trigger: AACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACT...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAAGGCTTGCAGATGGCTaGAGACCAGTGTGTTGGACT +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLRLADG*RPVCWT
Trigger: AGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCT...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACCTTGGGTTGCCACCTaGTTCTCTTGCAAATTGGTG +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRPWVAT*FSCKLV
Trigger: CACCAATTTGCAAGAGAACCAGGTGGCAACCCAAGG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGGTGAGCTGAAGATCTaGTTCTCATCCAGGACATCA +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLGELKI*FSSRTS
Trigger: TGATGTCCTGGATGAGAAGCAGATCTTCAGCTCACC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACCCACAGATAAATGGTaGTGCCTTTGCCATCTTTGG +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRPTDKW*CLCHLW
Trigger: CCAAAGATGGCAAAGGCAGCACCATTTATCTGTGGG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAATGGTATACCAGCCTCTaGCCTTCCACTTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKWYTSL*PSTLAR
Trigger: CCTGGCCAAAGTGGAAGGGCAGAGGCTGGTATACCA...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGTGGATGTTACTGGGTaGTGGAGAAGAACTCACAGT +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLVDVTG*WRRTHS
Trigger: ACTGTGAGTTCTTCTCCAGCACCCAGTAACATCCAC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCGGCTCTGTAGTGGGCTaGCAAGCATGGTGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIGSVVG*QAWWRW
Trigger: CCACCTCCACCATGCTTGCCAGCCCACTACAGAGCC...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACTAGGTGGATGTTACTaGGTGCTGGAGAAGAACTCA +
Preference number: 4 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRLGGCY*VLEKNS
Trigger: TGAGTTCTTCTCCAGCACCCAGTAACATCCACCTAG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGGGGCTACTCCTAGGTaGATGTTACTGGGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSGATPR*MLLGAG
Trigger: TCCAGCACCCAGTAACATCCACCTAGGAGTAGCCCC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATAAGAACGAGTTGAGTTaGAGCAGTAGTACTGGCAGG +
Preference number: 4 (lower is better)
Translates to: KREPKIGKEEYWITKGCYKNELS*SSSTGR
Trigger: CCTGCCAGTACTACTGCTCCAACTCAACTCGTTCTT...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp CTTTGGTCAGAGCGATGTCAAATAGGCCTGGGGAACTaGGAATCAAATGTTCTCACACCCCACGAGATAGAA +
Preference number: 4 (lower is better)
Translates to: LWSERCQIGLGN*ESNVLTPHEIE
Trigger: TTCTATCTCGTGGGGTGTGAGAACATTTGATTCCAAGTTCCCCAGGCCTATTTGACATCGCTCTGACCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTATCTGATCCTGTGTCATaGACAAGGTCCTGTCCCTTA +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLSDPVS*TRSCPL
Trigger: TAAGGGACAGGACCTTGTGCATGACACAGGATCAGA...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAACTCCCACAGATAAATaGTGCTGCCTTTGCCATCTT +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPTPTDK*CCLCHL
Trigger: AAGATGGCAAAGGCAGCACCATTTATCTGTGGGAGT...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGGCATCTCCTTGAACTaGTATACCAGCCTCTGCCCT +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSGISLN*YTSLCP
Trigger: AGGGCAGAGGCTGGTATACCAGTTCAAGGAGATGCC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAACACCTGACTCGGAAGTaGCTGAAGATGACCCTGATC +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKHLTRK*LKMTLI
Trigger: GATCAGGGTCATCTTCAGCCACTTCCGAGTCAGGTG...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTACAAGGCTCAGGTTATaGGAACCCCTTGAGAGCACC +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSTRLRL*EPLEST
Trigger: GGTGCTCTCAAGGGGTTCCCATAACCTGAGCCTTGT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAATGGAGTCCACCAACTTaGAGATGCCCTTCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKWSPPT*RCPSLS
Trigger: AGAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCA...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAATGCCCTTCTCTCTCTaGGTCCACTTAATGTACTTG +
Preference number: 4 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLMPFSL*VHLMYL
Trigger: CAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCAT...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCTGGTATACCAGCCTCTaGCCTTCCACTTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIWYTSL*PSTLAR
Trigger: CCTGGCCAAAGTGGAAGGGCAGAGGCTGGTATACCA...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCCAAGCATGGTGGAGGTaGTGGGAACCTCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIQAWWR*WEPPHP
Trigger: TGGATGAGGAGGTTCCCACCACCTCCACCATGCTTG...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAGATGTTACTGGGTGCTaGAGAAGAACTCACAGTTTT +
Preference number: 4 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPDVTGC*RRTHSF
Trigger: AAAACTGTGAGTTCTTCTCCAGCACCCAGTAACATC...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTCCTTGGGTTGCCACCTaGTTCTCTTGCAAATTGGTG +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSPWVAT*FSCKLV
Trigger: CACCAATTTGCAAGAGAACCAGGTGGCAACCCAAGG...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGACAGATAAATGGTGCTaGCTTTGCCATCTTTGGATT +
Preference number: 4 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLTDKWC*LCHLWI
Trigger: AATCCAAAGATGGCAAAGGCAGCACCATTTATCTGT...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGTGGATGTTACTGGGTaGTGGAGAAGAACTCACAGT +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSVDVTG*WRRTHS
Trigger: ACTGTGAGTTCTTCTCCAGCACCCAGTAACATCCAC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTCAGAATGCTCCTTCTaGTCACCAGCATCACTTGTC +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSSECSF*SPASLV
Trigger: GACAAGTGATGCTGGTGACCAGAAGGAGCATTCTGA...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAATCAGAATGCTCCTTCTaGTCACCAGCATCACTTGTC +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKSECSF*SPASLV
Trigger: GACAAGTGATGCTGGTGACCAGAAGGAGCATTCTGA...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAAAGAACGAGTTGAGTTaGAGCAGTAGTACTGGCAGG +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKKNELS*SSSTGR
Trigger: CCTGCCAGTACTACTGCTCCAACTCAACTCGTTCTT...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
3UTR CAA 72 bp AGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATaGTCAAGCATAGGGCTGATTTTATACAAACAGCCA +
Preference number: 4 (lower is better)
Translates to: REGRVLDHKGLL*SSIGLILYKQP
Trigger: TGGCTGTTTGTATAAAATCAGCCCTATGCTTGACAATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR TCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCAGGGTCAGTGACAGGTaGGGTACTTCGGTTGTTCTT +
Preference number: 4 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSIRVSDR*GTSVVL
Trigger: AAGAACAACCGAAGTACCTCACCTGTCACTGACCCT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTCTTATGATGCCATTGTaGACCTCATCCAGATCCAGT +
Preference number: 4 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSLMMPL*TSSRSS
Trigger: ACTGGATCTGGATGAGGTCCACAATGGCATCATAAG...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAACTTATGATGCCATTGTaGACCTCATCCAGATCCAGT +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKLMMPL*TSSRSS
Trigger: ACTGGATCTGGATGAGGTCCACAATGGCATCATAAG...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR GCA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAAAATGGTGCTGCCTTTaGCATCTTTGGATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SAERLRSGELFPETEKRKKWCCL*HLWISS
Trigger: GGAAGAAATCCAAAGATGGCAAAGGCAGCACCATTT...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
41% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CCA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCACTCCCACAGATAAATaGTGCTGCCTTTGCCATCTT +
Preference number: 4 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSITPTDK*CCLCHL
Trigger: AAGATGGCAAAGGCAGCACCATTTATCTGTGGGAGT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS GCA 90 bp CTGGCAGGAGGCCCATTGGTCAGCACCGTAGTCAGCGGGATGGTCTaGAGGGTGACAGTGGAGCCAGGCCCCACAGGGGCTACTCCTAGG +
Preference number: 5 (lower is better)
Translates to: LAGGPLVSTVVSGMV*RVTVEPGPTGATPR
Trigger: CCTAGGAGTAGCCCCTGTGGGGCCTGGCTCCACTGTCACCCTGCAGACCATCCCGCTGACTACGGTGCTGACCAATGGGCCTCCTGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 90 bp CCTCGGGGGAGGCTCTGGTTCCGACCCTGGAGCTGGCTCTCCGGATaGTACTGGTCGAGGGTGTGGAGGAAGTCGAGGCCTGGGAAGAGT +
Preference number: 5 (lower is better)
Translates to: PRGRLWFRPWSWLSG*YWSRVWRKSRPGKS
Trigger: ACTCTTCCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 90 bp GGGAGGCTCTGGTTCCGACCCTGGAGCTGGCTCTCCGGATGGTACTaGTCGAGGGTGTGGAGGAAGTCGAGGCCTGGGAAGAGTCTTCTG +
Preference number: 5 (lower is better)
Translates to: GRLWFRPWSWLSGWY*SRVWRKSRPGKSLL
Trigger: CAGAAGACTCTTCCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 90 bp GGTTATCCTTGTCCTCGGGGGAGGCTCTGGTTCCGACCCTGGAGCTaGCTCTCCGGATGGTACTGGTCGAGGGTGTGGAGGAAGTCGAGG +
Preference number: 5 (lower is better)
Translates to: GYPCPRGRLWFRPWS*LSGWYWSRVWRKSR
Trigger: CCTCGACTTCCTCCACACCCTCGACCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 90 bp TTGGCTTCTCCCAGGGAGGGTTATCCTTGTCCTCGGGGGAGGCTCTaGTTCCGACCCTGGAGCTGGCTCTCCGGATGGTACTGGTCGAGG +
Preference number: 5 (lower is better)
Translates to: LASPREGYPCPRGRL*FRPWSWLSGWYWSR
Trigger: CCTCGACCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 90 bp TTCCGACCCTGGAGCTGGCTCTCCGGATGGTACTGGTCGAGGGTGTaGAGGAAGTCGAGGCCTGGGAAGAGTCTTCTGGTGTCTCAGGGC +
Preference number: 5 (lower is better)
Translates to: FRPWSWLSGWYWSRV*RKSRPGKSLLVSQG
Trigger: GCCCTGAGACACCAGAAGACTCTTCCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 90 bp AAAGGCAGCAATCACAGTCCCAGGGGGCTGAGAGCTAGGCCCTGCTaGCCCAGCACCTATGACCTGGGATGGAGCTGGGTTGCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: KGSNHSPRGLRARPC*PSTYDLGWSWVALR
Trigger: CCTCAGAGCAACCCAGCTCCATCCCAGGTCATAGGTGCTGGGTCAGCAGGGCCTAGCTCTCAGCCCCCTGGGACTGTGATTGCTGCCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCAGGGAGGGTTATCCTaGTCCTCGGGGGAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVQGGLS*SSGEAL
Trigger: CAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp CCACTGGAAGTCCTGATAAAGGCAGCAATCACAGTCCCAGGGGGCTaGGAGCTAGGCCCTGCTGACCCAGCACCTATGACCTGGGATGGA +
Preference number: 5 (lower is better)
Translates to: PLEVLIKAAITVPGG*ELGPADPAPMTWDG
Trigger: TCCATCCCAGGTCATAGGTGCTGGGTCAGCAGGGCCTAGCTCTCAGCCCCCTGGGACTGTGATTGCTGCCTTTATCAGGACTTCCAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp CTAGGTGGATGTTACTGGGTGCTGGAGAAGAACTCACAGTTTTGGTaGGCCTGGCCTGGCTCTGTAGTGGGCTGGCAAGCATGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: LGGCYWVLEKNSQFW*AWPGSVVGWQAWWR
Trigger: CCTCCACCATGCTTGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTCTCCAGCACCCAGTAACATCCACCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 90 bp GACAATCCTAACTCCAGGCTTGCAGATGGCTGGAGACCAGTGTGTTaGACTTTTGGCTTCTCCCAGGGAGGGTTATCCTTGTCCTCGGGG +
Preference number: 5 (lower is better)
Translates to: DNPNSRLADGWRPVC*TFGFSQGGLSLSSG
Trigger: CCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAGGATTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS-3UTR CAA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCCATCCATCCCGTTGCTaGCAAACTCGAAGACCAGAT +
Preference number: 5 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVHPSRC*QTRRPD
Trigger: ATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATG...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GCAGACTCATGGGCTGACAGGAGCTGTAGGAACCCATGTGTGCTCGCTCCTGTCTTGGAGTCCACCAACTaGAAGATGCCCTTCTCTCTC +
Preference number: 5 (lower is better)
Translates to: ADSWADRSCRNPCVLAPVLESTN*KMPFSL
Trigger: GAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCAA...GACAGGAGCGAGCACACATGGGTTCCTACAGCTCCTGTCAGCCCATGAGTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp AGAGAGAGTCTGGTTCCCCACAAGGCTCAGGTTATGGGAACCCCTTaGGAGCACCTGACTCGGAAGTGGCTGAAGATGACCCTGATCTCT +
Preference number: 5 (lower is better)
Translates to: RESLVPHKAQVMGTP*EHLTRKWLKMTLIS
Trigger: AGAGATCAGGGTCATCTTCAGCCACTTCCGAGTCAGGTGCTCTCAAGGGGTTCCCATAACCTGAGCCTTGTGGGGAACCAGACTCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 90 bp ACTGGTCGAGGGTGTGGAGGAAGTCGAGGCCTGGGAAGAGTCTTCTaGTGTCTCAGGGCTCTCTTCTTCATCATCAATCACCACCAAGTC +
Preference number: 5 (lower is better)
Translates to: TGRGCGGSRGLGRVF*CLRALFFIINHHQV
Trigger: GACTTGGTGGTGATTGATGATGAAGAAGAGAGCCCTGAGACACCAGAAGACTCTTCCCAGGCCTCGACTTCCTCCACACCCTCGACCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS-3UTR CAA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCAGCAGGTGTTTCTGTCTaGCAGAAGAGCCAGGAGGAA +
Preference number: 5 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSAGVSV*QKSQEE
Trigger: TTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTGC...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 90 bp ACCTCCTCATCCACAGACAATCCTAACTCCAGGCTTGCAGATGGCTaGAGACCAGTGTGTTGGACTTTTGGCTTCTCCCAGGGAGGGTTA +
Preference number: 5 (lower is better)
Translates to: TSSSTDNPNSRLADG*RPVCWTFGFSQGGL
Trigger: TAACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAGGATTGTCTGTGGATGAGGAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS-3UTR CAA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCACATCCATCCCGTTGCTaGCAAACTCGAAGACCAGAT +
Preference number: 5 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSHPSRC*QTRRPD
Trigger: ATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATG...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGACAGGGAGGGTTATCCTaGTCCTCGGGGGAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRQGGLS*SSGEAL
Trigger: CAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTG...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGATCAGTGGGGCCCCTaGGGTTGCCACCTGGTTCTC +
Preference number: 5 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLDQWGP*GCHLVL
Trigger: GAGAACCAGGTGGCAACCCAAGGGGCCCCACTGATC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp GTTCAGGGGGAAGGAGGTCTGCAAAGTGAAGGTGTCCTTGAATGTTaGCACCTGCGGGACACTCTGAAGAACGAGTTGAGTTGGAGCAGT +
Preference number: 5 (lower is better)
Translates to: VQGEGGLQSEGVLEC*HLRDTLKNELSWSS
Trigger: ACTGCTCCAACTCAACTCGTTCTTCAGAGTGTCCCGCAGGTGTCAACATTCAAGGACACCTTCACTTTGCAGACCTCCTTCCCCCTGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp TCAGGTTCAGGGGTAGAGAGCAGGAAGTTGGGTAGATTGATGGCCTaGACAGAGTTGGAGTCTGAAAGCACTTCCGGTGAGCTGAAGATC +
Preference number: 5 (lower is better)
Translates to: SGSGVESRKLGRLMA*TELESESTSGELKI
Trigger: GATCTTCAGCTCACCGGAAGTGCTTTCAGACTCCAACTCTGTTCAGGCCATCAATCTACCCAACTTCCTGCTCTCTACCCCTGAACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS GCA 90 bp GACACAGCCTTGGAGTCCACCAACTTGAAGATGCCCTTCTCTCTCTaGGTCCACTTAATGTACTTGGGGCAGGTGTTTCTGTCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: DTALESTNLKMPFSL*VHLMYLGQVFLSCR
Trigger: TCTGCAAGACAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCAAGGCTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS-3UTR CAA 90 bp GCTGACCAGATCTGGCCACAAGCTGCTTCCTGGCTTGTGGATTTCCCTCCATCAGGCCAGGATTCCTCTTaGATAATAATATCTCAGGGC +
Preference number: 5 (lower is better)
Translates to: ADQIWPQAASWLVDFPPSGQDSS*IIISQG
Trigger: GCCCTGAGATATTATTATCAAAGAGGAATCCTGGCC...TGATGGAGGGAAATCCACAAGCCAGGAAGCAGCTTGTGGCCAGATCTGGTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACACTGCCTTTGCCATCTTaGGATTTCTTCCGTATAGGC +
Preference number: 5 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTLPLPS*DFFRIG
Trigger: GCCTATACGGAAGAAATCCAAAGATGGCAAAGGCAG...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATGAAGAACTCACAGTTTaGGTGAGCCTGGCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: KREPKIGKEEYWITKGCYEELTV*VSLAWL
Trigger: GAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTC...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGATCAGTGGGGCCCCTaGGGTTGCCACCTGGTTCTC +
Preference number: 5 (lower is better)
Translates to: SAERLRSGELFPETEKRKDQWGP*GCHLVL
Trigger: GAGAACCAGGTGGCAACCCAAGGGGCCCCACTGATC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCAAGCTTGGACACAGCCTaGGAGTCCACCAACTTGAAG +
Preference number: 5 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPSLDTA*ESTNLK
Trigger: CTTCAAGTTGGTGGACTCCAAGGCTGTGTCCAAGCT...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GGGGCATTCCACCAGTTCCTTCCAGTCTCAGAAAGGCATTGTTGCTTGCCAACAGGCCAGGATTCCTCTTaGATAATAATATCTCAGGGC +
Preference number: 5 (lower is better)
Translates to: GAFHQFLPVSERHCCLPTGQDSS*IIISQG
Trigger: GCCCTGAGATATTATTATCAAAGAGGAATCCTGGCC...TGTTGGCAAGCAACAATGCCTTTCTGAGACTGGAAGGAACTGGTGGAATGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGATGCCACCTGGTTCTCTaGCAAATTGGTGTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRCHLVL*QIGVQG
Trigger: CCCCTGAACACCAATTTGCAAGAGAACCAGGTGGCA...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp AGTGTCCTCTCAGCATATGCACCCATTGAAGTTCTCCTACCTAGACCTTTTCCATGCCACCTGGTTCTCTaGCAAATTGGTGTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: SVLSAYAPIEVLLPRPFPCHLVL*QIGVQG
Trigger: CCCCTGAACACCAATTTGCAAGAGAACCAGGTGGCA...TGGAAAAGGTCTAGGTAGGAGAACTTCAATGGGTGCATATGCTGAGAGGACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp CTTCTAAAATCTGATCCTGTGTCATGCACAAGGTCCTGTCCCTTATaGTGCCATTGTGGACCTCATCCAGATCCAGTCCTGAGCACAGAT +
Preference number: 5 (lower is better)
Translates to: LLKSDPVSCTRSCPL*CHCGPHPDPVLSTD
Trigger: ATCTGTGCTCAGGACTGGATCTGGATGAGGTCCACAATGGCATCATAAGGGACAGGACCTTGTGCATGACACAGGATCAGATTTTAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 90 bp ATCTTTGGATTTCTTCCGTATAGGCATGCTAGGGTCAGTGACAGGTaGGGTACTTCGGTTGTTCTTGGTCTTTCGGTTTCTCTTCCGTGC +
Preference number: 5 (lower is better)
Translates to: IFGFLPYRHARVSDR*GTSVVLGLSVSLPC
Trigger: GCACGGAAGAGAAACCGAAAGACCAAGAACAACCGAAGTACCTCACCTGTCACTGACCCTAGCATGCCTATACGGAAGAAATCCAAAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS-3UTR CAA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGTCCCTTATGATGCCATaGTGGACCTCATCCAGATCC +
Preference number: 5 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLSLMMP*WTSSRS
Trigger: GGATCTGGATGAGGTCCACAATGGCATCATAAGGGA...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATTTGGAGTCCACCAACTaGAAGATGCCCTTCTCTCTC +
Preference number: 5 (lower is better)
Translates to: KREPKIGKEEYWITKGCYLESTN*KMPFSL
Trigger: GAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCAA...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAAGCTTGGACACAGCCTaGGAGTCCACCAACTTGAAG +
Preference number: 5 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLSLDTA*ESTNLK
Trigger: CTTCAAGTTGGTGGACTCCAAGGCTGTGTCCAAGCT...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp AAGAGGGAACCCAAGATAGGGAAGGAAGAGTACTGGATCACAAAGGGCTGTTATGGTGAGGTACTTCGGTaGTTCTTGGTCTTTCGGTTT +
Preference number: 5 (lower is better)
Translates to: KREPKIGKEEYWITKGCYGEVLR*FLVFRF
Trigger: AAACCGAAAGACCAAGAACAACCGAAGTACCTCACC...ATAACAGCCCTTTGTGATCCAGTACTCTTCCTTCCCTATCTTGGGTTCCCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CACCAAGTCAGCTCATTTTCATTCCAAGAGCACATCTACTCCCTAGTGCTCTTGGGTGAGGTACTTCGGTaGTTCTTGGTCTTTCGGTTT +
Preference number: 5 (lower is better)
Translates to: HQVSSFSFQEHIYSLVLLGEVLR*FLVFRF
Trigger: AAACCGAAAGACCAAGAACAACCGAAGTACCTCACC...CAAGAGCACTAGGGAGTAGATGTGCTCTTGGAATGAAAATGAGCTGACTTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGAAGAACTCACAGTTTaGGTGAGCCTGGCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: SAERLRSGELFPETEKRKEELTV*VSLAWL
Trigger: GAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGGTTATGGGAACCCCTaGAGAGCACCTGACTCGGAA +
Preference number: 5 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSGYGNP*RAPDSE
Trigger: TTCCGAGTCAGGTGCTCTCAAGGGGTTCCCATAACC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GAGATTTCCAGTCTAGAAGGTCAGCAGAATGGTGGCATCATGAACAGAAGCAGAGTACTTCGGTTGTTCTaGGTCTTTCGGTTTCTCTTC +
Preference number: 5 (lower is better)
Translates to: EISSLEGQQNGGIMNRSRVLRLF*VFRFLF
Trigger: GAAGAGAAACCGAAAGACCAAGAACAACCGAAGTAC...TCTGCTTCTGTTCATGATGCCACCATTCTGCTGACCTTCTAGACTGGAAATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGCAGGTGTTTCTGTCTaGCAGAAGAGCCAGGAGGAA +
Preference number: 5 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSAGVSV*QKSQEE
Trigger: TTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTGC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTTCCCTTATGATGCCATaGTGGACCTCATCCAGATCC +
Preference number: 5 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSSLMMP*WTSSRS
Trigger: GGATCTGGATGAGGTCCACAATGGCATCATAAGGGA...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GTGTTCCTTCTCTCTCCCACTATGGTTTTAACATACATGGCCTCTTGTCCCTTAGTACTTCGGTTGTTCTaGGTCTTTCGGTTTCTCTTC +
Preference number: 5 (lower is better)
Translates to: VFLLSPTMVLTYMASCPLVLRLF*VFRFLF
Trigger: GAAGAGAAACCGAAAGACCAAGAACAACCGAAGTAC...TAAGGGACAAGAGGCCATGTATGTTAAAACCATAGTGGGAGAGAGAAGGAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 90 bp GTGGATACATCATCATCTGTCAGCAAAATACTGCCTTCTAAAATCTaGTCCTGTGTCATGCACAAGGTCCTGTCCCTTATGATGCCATTG +
Preference number: 5 (lower is better)
Translates to: VDTSSSVSKILPSKI*SCVMHKVLSLMMPL
Trigger: CAATGGCATCATAAGGGACAGGACCTTGTGCATGACACAGGATCAGATTTTAGAAGGCAGTATTTTGCTGACAGATGATGATGTATCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS-3UTR CAA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAATATCATCCATCCCGTaGCTTGCAAACTCGAAGACC +
Preference number: 5 (lower is better)
Translates to: SAERLRSGELFPETEKRKISSIP*LANSKT
Trigger: GGTCTTCGAGTTTGCAAGCAACGGGATGGATGATAT...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp TCTGCTGAGAGACTAAGATCAGGAGAGCTCTTTCCAGAAACAGAAAAGAGAAAAGTCCACTTAATGTACTaGGGGCAGGTGTTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: SAERLRSGELFPETEKRKVHLMY*GQVFLS
Trigger: AGACAGAAACACCTGCCCCAAGTACATTAAGTGGAC...TTTTCTCTTTTCTGTTTCTGGAAAGAGCTCTCCTGATCTTAGTCTCTCAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTGTCCACTTAATGTACTaGGGGCAGGTGTTTCTGTCT +
Preference number: 5 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSVHLMY*GQVFLS
Trigger: AGACAGAAACACCTGCCCCAAGTACATTAAGTGGAC...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp CGGTTAGCTAGTTTAACACTCTGGGTAAGGAAGAAACTGAACAAGAAGTTGTCTACTCTGAAGAACGAGTaGAGTTGGAGCAGTAGTACT +
Preference number: 5 (lower is better)
Translates to: RLASLTLWVRKKLNKKLSTLKNE*SWSSST
Trigger: AGTACTACTGCTCCAACTCAACTCGTTCTTCAGAGT...AGACAACTTCTTGTTCAGTTTCTTCCTTACCCAGAGTGTTAAACTAGCTAACCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS-3UTR CAA 90 bp GTTACAAGTTTAAGAATTAAAGGTAAGAACTGGCTGTTCCCACTCAATTCCATCACTCTGAAGAACGAGTaGAGTTGGAGCAGTAGTACT +
Preference number: 5 (lower is better)
Translates to: VTSLRIKGKNWLFPLNSITLKNE*SWSSST
Trigger: AGTACTACTGCTCCAACTCAACTCGTTCTTCAGAGT...GATGGAATTGAGTGGGAACAGCCAGTTCTTACCTTTAATTCTTAAACTTGTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 72 bp CCCAGGGAGGGTTATCCTTGTCCTCGGGGGAGGCTCTaGTTCCGACCCTGGAGCTGGCTCTCCGGATGGTAC +
Preference number: 6 (lower is better)
Translates to: PREGYPCPRGRL*FRPWSWLSGWY
Trigger: GTACCATCCGGAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 72 bp AGGCTCTGGTTCCGACCCTGGAGCTGGCTCTCCGGATaGTACTGGTCGAGGGTGTGGAGGAAGTCGAGGCCT +
Preference number: 6 (lower is better)
Translates to: RLWFRPWSWLSG*YWSRVWRKSRP
Trigger: AGGCCTCGACTTCCTCCACACCCTCGACCAGTACCATCCGGAGAGCCAGCTCCAGGGTCGGAACCAGAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 72 bp GCCTGGCCTGGCTCTGTAGTGGGCTGGCAAGCATGGTaGAGGTGGTGGGAACCTCCTCATCCACAGACAATC +
Preference number: 6 (lower is better)
Translates to: AWPGSVVGWQAW*RWWEPPHPQTI
Trigger: GATTGTCTGTGGATGAGGAGGTTCCCACCACCTCCACCATGCTTGCCAGCCCACTACAGAGCCAGGCCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 72 bp CCCAGCCAGAAGTTGGGGGAGACCACTGAGGATCAGTaGGGCCCCTTGGGTTGCCACCTGGTTCTCTTGCAA +
Preference number: 6 (lower is better)
Translates to: PSQKLGETTEDQ*GPLGCHLVLLQ
Trigger: TTGCAAGAGAACCAGGTGGCAACCCAAGGGGCCCCACTGATCCTCAGTGGTCTCCCCCAACTTCTGGCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 90 bp AGACCAGTGTGTTGGACTTTTGGCTTCTCCCAGGGAGGGTTATCCTaGTCCTCGGGGGAGGCTCTGGTTCCGACCCTGGAGCTGGCTCTC +
Preference number: 6 (lower is better)
Translates to: RPVCWTFGFSQGGLS*SSGEALVPTLELAL
Trigger: GAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACTGGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp GTCCTGATAAAGGCAGCAATCACAGTCCCAGGGGGCTaGGAGCTAGGCCCTGCTGACCCAGCACCTATGACC +
Preference number: 6 (lower is better)
Translates to: VLIKAAITVPGG*ELGPADPAPMT
Trigger: GGTCATAGGTGCTGGGTCAGCAGGGCCTAGCTCTCAGCCCCCTGGGACTGTGATTGCTGCCTTTATCAGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 72 bp CTCCACGGGTGCCCCAGTAACCACACCCTGCACATATaGAGAGGACCTCAAGGGCCCCTCCTTTACCACAGG +
Preference number: 6 (lower is better)
Translates to: LHGCPSNHTLHI*RGPQGPLLYHR
Trigger: CCTGTGGTAAAGGAGGGGCCCTTGAGGTCCTCTTCATATGTGCAGGGTGTGGTTACTGGGGCACCCGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 72 bp TGTTGGACTTTTGGCTTCTCCCAGGGAGGGTTATCCTaGTCCTCGGGGGAGGCTCTGGTTCCGACCCTGGAG +
Preference number: 6 (lower is better)
Translates to: CWTFGFSQGGLS*SSGEALVPTLE
Trigger: CTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAAAAGTCCAACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp CTAACTCCAGGCTTGCAGATGGCTGGAGACCAGTGTGTTGGACTTTaGGCTTCTCCCAGGGAGGGTTATCCTTGTCCTCGGGGGAGGCTC +
Preference number: 6 (lower is better)
Translates to: LTPGLQMAGDQCVGL*ASPREGYPCPRGRL
Trigger: GAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp CTGGTTCCCCACAAGGCTCAGGTTATGGGAACCCCTTaGGAGCACCTGACTCGGAAGTGGCTGAAGATGACC +
Preference number: 6 (lower is better)
Translates to: LVPHKAQVMGTP*EHLTRKWLKMT
Trigger: GGTCATCTTCAGCCACTTCCGAGTCAGGTGCTCTCAAGGGGTTCCCATAACCTGAGCCTTGTGGGGAACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 72 bp GCTTGCAGATGGCTGGAGACCAGTGTGTTGGACTTTTaGCTTCTCCCAGGGAGGGTTATCCTTGTCCTCGGG +
Preference number: 6 (lower is better)
Translates to: ACRWLETSVLDF*LLPGRVILVLG
Trigger: CCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 72 bp CCTGGCTCTGTAGTGGGCTGGCAAGCATGGTGGAGGTaGTGGGAACCTCCTCATCCACAGACAATCCTAACT +
Preference number: 6 (lower is better)
Translates to: PGSVVGWQAWWR*WEPPHPQTILT
Trigger: AGTTAGGATTGTCTGTGGATGAGGAGGTTCCCACCACCTCCACCATGCTTGCCAGCCCACTACAGAGCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 72 bp ACAGTGGAGCCAGGCCCCACAGGGGCTACTCCTAGGTaGATGTTACTGGGTGCTGGAGAAGAACTCACAGTT +
Preference number: 6 (lower is better)
Translates to: TVEPGPTGATPR*MLLGAGEELTV
Trigger: AACTGTGAGTTCTTCTCCAGCACCCAGTAACATCCACCTAGGAGTAGCCCCTGTGGGGCCTGGCTCCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 72 bp GGCTTGCAGATGGCTGGAGACCAGTGTGTTGGACTTTaGGCTTCTCCCAGGGAGGGTTATCCTTGTCCTCGG +
Preference number: 6 (lower is better)
Translates to: GLQMAGDQCVGL*ASPREGYPCPR
Trigger: CCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp ACTCCTAGGTGGATGTTACTGGGTGCTGGAGAAGAACTCACAGTTTaGGTGAGCCTGGCCTGGCTCTGTAGTGGGCTGGCAAGCATGGTG +
Preference number: 6 (lower is better)
Translates to: TPRWMLLGAGEELTV*VSLAWLCSGLASMV
Trigger: CACCATGCTTGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTCTCCAGCACCCAGTAACATCCACCTAGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 90 bp GAGAGAGAGTCTGGTTCCCCACAAGGCTCAGGTTATGGGAACCCCTaGAGAGCACCTGACTCGGAAGTGGCTGAAGATGACCCTGATCTC +
Preference number: 6 (lower is better)
Translates to: ERESGSPQGSGYGNP*RAPDSEVAEDDPDL
Trigger: GAGATCAGGGTCATCTTCAGCCACTTCCGAGTCAGGTGCTCTCAAGGGGTTCCCATAACCTGAGCCTTGTGGGGAACCAGACTCTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 72 bp ATAGGGGACCTGTTCCACGATCACGGCTGGGAACACTaGAGGGTCTTCCAGCTGGTGGATATCATCCATCCC +
Preference number: 6 (lower is better)
Translates to: IGDLFHDHGWEH*RVFQLVDIIHP
Trigger: GGGATGGATGATATCCACCAGCTGGAAGACCCTTCAGTGTTCCCAGCCGTGATCGTGGAACAGGTCCCCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp TGTTACTGGGTGCTGGAGAAGAACTCACAGTTTTGGTaGGCCTGGCCTGGCTCTGTAGTGGGCTGGCAAGCA +
Preference number: 6 (lower is better)
Translates to: CYWVLEKNSQFW*AWPGSVVGWQA
Trigger: TGCTTGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTCTCCAGCACCCAGTAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 72 bp TGGATGTTACTGGGTGCTGGAGAAGAACTCACAGTTTaGGTGAGCCTGGCCTGGCTCTGTAGTGGGCTGGCA +
Preference number: 6 (lower is better)
Translates to: WMLLGAGEELTV*VSLAWLCSGLA
Trigger: TGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTCTCCAGCACCCAGTAACATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 72 bp TCTGGTTCCCCACAAGGCTCAGGTTATGGGAACCCCTaGAGAGCACCTGACTCGGAAGTGGCTGAAGATGAC +
Preference number: 6 (lower is better)
Translates to: SGSPQGSGYGNP*RAPDSEVAEDD
Trigger: GTCATCTTCAGCCACTTCCGAGTCAGGTGCTCTCAAGGGGTTCCCATAACCTGAGCCTTGTGGGGAACCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CAA 90 bp AGGTGGTGGGAACCTCCTCATCCACAGACAATCCTAACTCCAGGCTaGCAGATGGCTGGAGACCAGTGTGTTGGACTTTTGGCTTCTCCC +
Preference number: 6 (lower is better)
Translates to: RWWEPPHPQTILTPG*QMAGDQCVGLLASP
Trigger: GGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAGGATTGTCTGTGGATGAGGAGGTTCCCACCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp AGAGGACCTCAAGGGCCCCTCCTTTACCACAGGCACTaGTGTGCCACTGGAAGTCCTGATAAAGGCAGCAAT +
Preference number: 6 (lower is better)
Translates to: RGPQGPLLYHRH*CATGSPDKGSN
Trigger: ATTGCTGCCTTTATCAGGACTTCCAGTGGCACATCAGTGCCTGTGGTAAAGGAGGGGCCCTTGAGGTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS CCA 72 bp GGGTGTGGAGGAAGTCGAGGCCTGGGAAGAGTCTTCTaGTGTCTCAGGGCTCTCTTCTTCATCATCAATCAC +
Preference number: 6 (lower is better)
Translates to: GCGGSRGLGRVF*CLRALFFIINH
Trigger: GTGATTGATGATGAAGAAGAGAGCCCTGAGACACCAGAAGACTCTTCCCAGGCCTCGACTTCCTCCACACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 72 bp GGTCTTCCAGCTGGTGGATATCATCCATCCCGTTGCTaGCAAACTCGAAGACCAGATCACTGGGCTGCAGAG +
Preference number: 6 (lower is better)
Translates to: GLPAGGYHPSRC*QTRRPDHWAAE
Trigger: CTCTGCAGCCCAGTGATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATGATATCCACCAGCTGGAAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 72 bp GAAGGGTCTTCCAGCTGGTGGATATCATCCATCCCGTaGCTTGCAAACTCGAAGACCAGATCACTGGGCTGC +
Preference number: 6 (lower is better)
Translates to: EGSSSWWISSIP*LANSKTRSLGC
Trigger: GCAGCCCAGTGATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATGATATCCACCAGCTGGAAGACCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 72 bp CCCCACAGCTTGGACACAGCCTTGGAGTCCACCAACTaGAAGATGCCCTTCTCTCTCTGCGTCCACTTAATG +
Preference number: 6 (lower is better)
Translates to: PHSLDTALESTN*KMPFSLCVHLM
Trigger: CATTAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCAAGGCTGTGTCCAAGCTGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp TTCTGCTTGCCCCACAGCTTGGACACAGCCTTGGAGTCCACCAACTaGAAGATGCCCTTCTCTCTCTGCGTCCACTTAATGTACTTGGGG +
Preference number: 6 (lower is better)
Translates to: FCLPHSLDTALESTN*KMPFSLCVHLMYLG
Trigger: CCCCAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCAAGGCTGTGTCCAAGCTGTGGGGCAAGCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CCA 72 bp TCCACAGACAATCCTAACTCCAGGCTTGCAGATGGCTaGAGACCAGTGTGTTGGACTTTTGGCTTCTCCCAG +
Preference number: 6 (lower is better)
Translates to: STDNPNSRLADG*RPVCWTFGFSQ
Trigger: CTGGGAGAAGCCAAAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAGGATTGTCTGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 72 bp GGCATGCTAGGGTCAGTGACAGGTGAGGTACTTCGGTaGTTCTTGGTCTTTCGGTTTCTCTTCCGTGCCTTC +
Preference number: 6 (lower is better)
Translates to: GMLGSVTGEVLR*FLVFRFLFRAF
Trigger: GAAGGCACGGAAGAGAAACCGAAAGACCAAGAACAACCGAAGTACCTCACCTGTCACTGACCCTAGCATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp GGGAACACTGAAGGGTCTTCCAGCTGGTGGATATCATCCATCCCGTaGCTTGCAAACTCGAAGACCAGATCACTGGGCTGCAGAGCAATA +
Preference number: 6 (lower is better)
Translates to: GNTEGSSSWWISSIP*LANSKTRSLGCRAI
Trigger: TATTGCTCTGCAGCCCAGTGATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATGATATCCACCAGCTGGAAGACCCTTCAGTGTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp CTCTCTCTGCGTCCACTTAATGTACTTGGGGCAGGTGTTTCTGTCTaGCAGAAGAGCCAGGAGGAACTCCCACAGATAAATGGTGCTGCC +
Preference number: 6 (lower is better)
Translates to: LSLRPLNVLGAGVSV*QKSQEELPQINGAA
Trigger: GGCAGCACCATTTATCTGTGGGAGTTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp TTCCGTATAGGCATGCTAGGGTCAGTGACAGGTGAGGTACTTCGGTaGTTCTTGGTCTTTCGGTTTCTCTTCCGTGCCTTCCCCATCTTC +
Preference number: 6 (lower is better)
Translates to: FRIGMLGSVTGEVLR*FLVFRFLFRAFPIF
Trigger: GAAGATGGGGAAGGCACGGAAGAGAAACCGAAAGACCAAGAACAACCGAAGTACCTCACCTGTCACTGACCCTAGCATGCCTATACGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp ACCAACTTGAAGATGCCCTTCTCTCTCTGCGTCCACTTAATGTACTaGGGGCAGGTGTTTCTGTCTTGCAGAAGAGCCAGGAGGAACTCC +
Preference number: 6 (lower is better)
Translates to: TNLKMPFSLCVHLMY*GQVFLSCRRARRNS
Trigger: GGAGTTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp TCTGATCCTGTGTCATGCACAAGGTCCTGTCCCTTATaGTGCCATTGTGGACCTCATCCAGATCCAGTCCTG +
Preference number: 6 (lower is better)
Translates to: SDPVSCTRSCPL*CHCGPHPDPVL
Trigger: CAGGACTGGATCTGGATGAGGTCCACAATGGCATCATAAGGGACAGGACCTTGTGCATGACACAGGATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp GAACAGAGTTGGAGTCTGAAAGCACTTCCGGTGAGCTaGAGATCTGCTTCTCATCCAGGACATCACTGGGAG +
Preference number: 6 (lower is better)
Translates to: EQSWSLKALPVS*RSASHPGHHWE
Trigger: CTCCCAGTGATGTCCTGGATGAGAAGCAGATCTTCAGCTCACCGGAAGTGCTTTCAGACTCCAACTCTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS GCA 72 bp TTGGAGTCTGAAAGCACTTCCGGTGAGCTGAAGATCTaGTTCTCATCCAGGACATCACTGGGAGTTGCCACA +
Preference number: 6 (lower is better)
Translates to: LESESTSGELKI*FSSRTSLGVAT
Trigger: TGTGGCAACTCCCAGTGATGTCCTGGATGAGAAGCAGATCTTCAGCTCACCGGAAGTGCTTTCAGACTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 72 bp AAGATGCCCTTCTCTCTCTGCGTCCACTTAATGTACTaGGGGCAGGTGTTTCTGTCTTGCAGAAGAGCCAGG +
Preference number: 6 (lower is better)
Translates to: KMPFSLCVHLMY*GQVFLSCRRAR
Trigger: CCTGGCTCTTCTGCAAGACAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp GAAGGAGGTCTGCAAAGTGAAGGTGTCCTTGAATGTTaGCACCTGCGGGACACTCTGAAGAACGAGTTGAGT +
Preference number: 6 (lower is better)
Translates to: EGGLQSEGVLEC*HLRDTLKNELS
Trigger: ACTCAACTCGTTCTTCAGAGTGTCCCGCAGGTGTCAACATTCAAGGACACCTTCACTTTGCAGACCTCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS GCA 72 bp TTGGAGTCCACCAACTTGAAGATGCCCTTCTCTCTCTaGGTCCACTTAATGTACTTGGGGCAGGTGTTTCTG +
Preference number: 6 (lower is better)
Translates to: LESTNLKMPFSL*VHLMYLGQVFL
Trigger: CAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGTTGGTGGACTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS GCA 72 bp TTCTCTTGCAAATTGGTGTTCAGGGGGAAGGAGGTCTaGAAAGTGAAGGTGTCCTTGAATGTTGACACCTGC +
Preference number: 6 (lower is better)
Translates to: FSCKLVFRGKEV*KVKVSLNVDTC
Trigger: GCAGGTGTCAACATTCAAGGACACCTTCACTTTGCAGACCTCCTTCCCCCTGAACACCAATTTGCAAGAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
CDS TCA 72 bp GCTTCTCATCCAGGACATCACTGGGAGTTGCCACATTaGATAGGACTTCAGTGGATGACACGTTATTTGAGG +
Preference number: 6 (lower is better)
Translates to: ASHPGHHWELPH*IGLQWMTRYLR
Trigger: CCTCAAATAACGTGTCATCCACTGAAGTCCTATTCAATGTGGCAACTCCCAGTGATGTCCTGGATGAGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS TCA 72 bp TTTCTTCCGTATAGGCATGCTAGGGTCAGTGACAGGTaGGGTACTTCGGTTGTTCTTGGTCTTTCGGTTTCT +
Preference number: 6 (lower is better)
Translates to: FLPYRHARVSDR*GTSVVLGLSVS
Trigger: AGAAACCGAAAGACCAAGAACAACCGAAGTACCTCACCTGTCACTGACCCTAGCATGCCTATACGGAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 90 bp CTGAAGATCTGCTTCTCATCCAGGACATCACTGGGAGTTGCCACATaGAATAGGACTTCAGTGGATGACACGTTATTTGAGGTGGATACA +
Preference number: 6 (lower is better)
Translates to: LKICFSSRTSLGVAT*NRTSVDDTLFEVDT
Trigger: TGTATCCACCTCAAATAACGTGTCATCCACTGAAGTCCTATTCAATGTGGCAACTCCCAGTGATGTCCTGGATGAGAAGCAGATCTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2
CDS CAA 72 bp TGCTTCTCATCCAGGACATCACTGGGAGTTGCCACATaGAATAGGACTTCAGTGGATGACACGTTATTTGAG +
Preference number: 6 (lower is better)
Translates to: CFSSRTSLGVAT*NRTSVDDTLFE
Trigger: CTCAAATAACGTGTCATCCACTGAAGTCCTATTCAATGTGGCAACTCCCAGTGATGTCCTGGATGAGAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033429.9
ENSMUST00000114958.8
ENSMUST00000140486.2