Pregenerated sensors for DHRS4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022210Ensembl transcript IDs: ENSMUST00000022821.8, ENSMUST00000226168.2, ENSMUST00000226298.2, ENSMUST00000226902.2, ENSMUST00000228353.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAACAAGATGTTAGGTGGTGGCAACGAAGGGCGACAGAGGCAAGGTaGACTGAGCCCGCCCCACACACCTGCCCTGGTAGGCTGTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: EQDVRWWQRRATEAR*TEPAPHTCPGRLFL Trigger: CAGAAACAGCCTACCAGGGCAGGTGTGTGGGGCGGGCTCAGTCCACCTTGCCTCTGTCGCCCTTCGTTGCCACCACCTAACATCTTGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| 3UTR TCA 90 bp | GGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTaGAAAACAGCACCGCCTGTTAGGGAAGGTCACAGTCAGAGATCG | + |
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Preference number: 1 (lower is better) Translates to: GSLLERFLVYNKGGR*KTAPPVREGHSQRS Trigger: CGATCTCTGACTGTGACCTTCCCTAACAGGCGGTGCTGTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000226298.2 |
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| 3UTR-3UTR TCA 90 bp | CATAGCAACAGCAAGGATGCTCATCTGACCACACTTCGACCACAGGGAAAGCAGAGAGGCAAGGTGGACTaGGCCCGCCCCACACACCTG | + |
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Preference number: 2 (lower is better) Translates to: HSNSKDAHLTTLRPQGKQRGKVD*ARPTHL Trigger: CAGGTGTGTGGGGCGGGCTCAGTCCACCTTGCCTCT...CTGCTTTCCCTGTGGTCGAAGTGTGGTCAGATGAGCATCCTTGCTGTTGCTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| 3UTR-3UTR GCA 90 bp | AGTAGCCACAGTCTTCTCAGCAAGCCCTTTTCCCACTACCTATCCCCCAGCTTCCCCGCCCCACACACCTaGCCTGGTAGGCTGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: SSHSLLSKPFSHYLSPSFPAPHT*PGRLFL Trigger: CAGAAACAGCCTACCAGGGCAGGTGTGTGGGGCGGG...GAAGCTGGGGGATAGGTAGTGGGAAAAGGGCTTGCTGAGAAGACTGTGGCTACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| 3UTR CAA 90 bp | GCACCGCCTGTTAGGGAAGGTCACAGTCAGAGATCGCCTTGTGGTTaGTGTAGGTTAGGGTTCATGGAAGCAAGGTGTCTCTTTTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: APPVREGHSQRSPCG*CRLGFMEARCLFCG Trigger: CCCACAAAAGAGACACCTTGCTTCCATGAACCCTAACCTACACAAACCACAAGGCGATCTCTGACTGTGACCTTCCCTAACAGGCGGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGGGTTCATGGAAGCAAGGTGTCTCTTTTGTGGGAGAGGACTTGGTAGGATGCTCTGCAAAGGAAAATaGGCTGAGCTGACTCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: LGFMEARCLFCGRGLGRMLCKGK*AELTPS Trigger: GGAGGGAGTCAGCTCAGCTCATTTTCCTTTGCAGAG...CATCCTACCAAGTCCTCTCCCACAAAAGAGACACCTTGCTTCCATGAACCCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| 3UTR CAA 90 bp | CTTCTATCTCTCCTCAAAGTGTCCAGAGGCGAGGATGAGAGGGATTaGATCTTCACTAAAGTAGCCACAGTCTTCTCAGCAAGCCCTTTT | + |
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Preference number: 2 (lower is better) Translates to: LLSLLKVSRGEDERD*IFTKVATVFSASPF Trigger: AAAAGGGCTTGCTGAGAAGACTGTGGCTACTTTAGTGAAGATCAAATCCCTCTCATCCTCGCCTCTGGACACTTTGAGGAGAGATAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| 3UTR CCA 72 bp | GTTAGGTGGTGGCAACGAAGGGCGACAGAGGCAAGGTaGACTGAGCCCGCCCCACACACCTGCCCTGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: VRWWQRRATEAR*TEPAPHTCPGR Trigger: CCTACCAGGGCAGGTGTGTGGGGCGGGCTCAGTCCACCTTGCCTCTGTCGCCCTTCGTTGCCACCACCTAAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| 3UTR CCA 72 bp | CATCTTTGGGCAGTTGGAGGGGTGGATGGCGTAGGATaGAAGGAGCGACAGGTACTCACAGGGAACCGAGTG | + |
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Preference number: 3 (lower is better) Translates to: HLWAVGGVDGVG*KERQVLTGNRV Trigger: CACTCGGTTCCCTGTGAGTACCTGTCGCTCCTTCCATCCTACGCCATCCACCCCTCCAACTGCCCAAAGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| 3UTR TCA 72 bp | ATCACCACTGAGCCGCCTCTGCAAAGGAAAATGAGCTaGGCTGACTCCCTCCAGCATAAAGAGCGCTGCCCC | + |
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Preference number: 3 (lower is better) Translates to: ITTEPPLQRKMS*ADSLQHKERCP Trigger: GGGGCAGCGCTCTTTATGCTGGAGGGAGTCAGCTCAGCTCATTTTCCTTTGCAGAGGCGGCTCAGTGGTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| 3UTR TCA 72 bp | TTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTaGAAAACAGCACCGCCTGTTAGGGAAGGTCACAGT | + |
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Preference number: 3 (lower is better) Translates to: LERFLVYNKGGR*KTAPPVREGHS Trigger: ACTGTGACCTTCCCTAACAGGCGGTGCTGTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000226298.2 |
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| 3UTR-3UTR CAA 90 bp | GGTTTGTGTAGGTTAGGGTTCATGGAAGCAAGGTGTCTCTTTTGTGGGAGAGGATTTGCAGGGTCACTTTaGGAAAGATTCTTAGTCTAC | + |
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Preference number: 3 (lower is better) Translates to: GLCRLGFMEARCLFCGRGFAGSL*ERFLVY Trigger: GTAGACTAAGAATCTTTCCAAAAGTGACCCTGCAAA...TCCTCTCCCACAAAAGAGACACCTTGCTTCCATGAACCCTAACCTACACAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| CDS-3UTR CCA 90 bp | CCGCCTGTTAGGGAAGGTCACAGTCAGAGATCGCCTTGTGGTTTGTGTAGGTTACTGCTGACGACCACGTaGGCCCCATCTTCAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PPVREGHSQRSPCGLCRLLLTTT*APSSAR Trigger: CCTGGCTGAAGATGGGGCCCACGTGGTCGTCAGCAG...TAACCTACACAAACCACAAGGCGATCTCTGACTGTGACCTTCCCTAACAGGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226168.2 |
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| CDS-3UTR CCA 90 bp | AGCAAGGATGCTCATCTGACCACACTTCGACCACAGGGAAAGCAGGAACTTATCCTGCTGACGACCACGTaGGCCCCATCTTCAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SKDAHLTTLRPQGKQELILLTTT*APSSAR Trigger: CCTGGCTGAAGATGGGGCCCACGTGGTCGTCAGCAG...GATAAGTTCCTGCTTTCCCTGTGGTCGAAGTGTGGTCAGATGAGCATCCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR GCA 90 bp | GGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTGAAAAACAGCACCGCCTGTCCACGTGGCACACGATaGCAGTCACACTCAGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GKILSLQQGWALKNSTACPRGTR*QSHSGP Trigger: AGGGCCTGAGTGTGACTGGCATCGTGTGCCACGTGG...ACAGGCGGTGCTGTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS-3UTR GCA 90 bp | AGTAGCCACAGTCTTCTCAGCAAGCCCTTTTCCCACTACCTATCCCCCAGCTTCCTTTTCTCGATCCTCTaGCTTCCCCACGTGGCACAC | + |
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Preference number: 4 (lower is better) Translates to: SSHSLLSKPFSHYLSPSFLFSIL*LPHVAH Trigger: GTGTGCCACGTGGGGAAGGCAGAGGATCGAGAAAAG...GAAGCTGGGGGATAGGTAGTGGGAAAAGGGCTTGCTGAGAAGACTGTGGCTACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR CCA 90 bp | AGTAGCCACAGTCTTCTCAGCAAGCCCTTTTCCCACTACCTATCCCCCAGCTTCCCAGGGCCACCTTATTaGAGAGAGGGTTTCGACGAG | + |
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Preference number: 4 (lower is better) Translates to: SSHSLLSKPFSHYLSPSFPGPPY*REGFDE Trigger: CTCGTCGAAACCCTCTCTCCAATAAGGTGGCCCTGG...GAAGCTGGGGGATAGGTAGTGGGAAAAGGGCTTGCTGAGAAGACTGTGGCTACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR GCA 90 bp | TTAGTTTGCAGGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCCACGTGGCACACGATaGCAGTCACACTCAGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LVCRVTFGKILSLQQGWAPRGTR*QSHSGP Trigger: AGGGCCTGAGTGTGACTGGCATCGTGTGCCACGTGG...CGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCCTGCAAACTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS-3UTR CCA 90 bp | TTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTGAAAAACAGCACCGCCCCAGGGCCACCTTATTaGAGAGAGGGTTTCGACGAG | + |
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Preference number: 4 (lower is better) Translates to: FGKILSLQQGWALKNSTAPGPPY*REGFDE Trigger: CTCGTCGAAACCCTCTCTCCAATAAGGTGGCCCTGG...GGCGGTGCTGTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| 3UTR CAA 72 bp | GTTAGGGAAGGTCACAGTCAGAGATCGCCTTGTGGTTaGTGTAGGTTAGGGTTCATGGAAGCAAGGTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: VREGHSQRSPCG*CRLGFMEARCL Trigger: GAGACACCTTGCTTCCATGAACCCTAACCTACACAAACCACAAGGCGATCTCTGACTGTGACCTTCCCTAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| CDS-3UTR TCA 90 bp | CATAGCAACAGCAAGGATGCTCATCTGACCACACTTCGACCACAGGGAAAGCAGGCTTGCCTAGCCTTCTaGTTTGCATGGCTTCTTTTA | + |
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Preference number: 4 (lower is better) Translates to: HSNSKDAHLTTLRPQGKQACLAF*FAWLLL Trigger: TAAAAGAAGCCATGCAAATCAGAAGGCTAGGCAAGC...CTGCTTTCCCTGTGGTCGAAGTGTGGTCAGATGAGCATCCTTGCTGTTGCTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR GCA 90 bp | ACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTGAAAAACAGCACCCTTTTCTCGATCCTCTaGCTTCCCCACGTGGCACAC | + |
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Preference number: 4 (lower is better) Translates to: TFGKILSLQQGWALKNSTLFSIL*LPHVAH Trigger: GTGTGCCACGTGGGGAAGGCAGAGGATCGAGAAAAG...GGTGCTGTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS-3UTR GCA 90 bp | AAAGTAGCCACAGTCTTCTCAGCAAGCCCTTTTCCCACTACCTATCCCCCAGCTTATGAAGTCCTCTCTTaGTTTCTCCTCCCACAACAC | + |
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Preference number: 4 (lower is better) Translates to: KVATVFSASPFPTTYPPAYEVLS*FLLPQH Trigger: GTGTTGTGGGAGGAGAAAGCAAGAGAGGACTTCATA...AGCTGGGGGATAGGTAGTGGGAAAAGGGCTTGCTGAGAAGACTGTGGCTACTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR CCA 90 bp | AGGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTGAAAAACCCAGGGCCACCTTATTaGAGAGAGGGTTTCGACGAG | + |
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Preference number: 4 (lower is better) Translates to: RVTFGKILSLQQGWALKNPGPPY*REGFDE Trigger: CTCGTCGAAACCCTCTCTCCAATAAGGTGGCCCTGG...GTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS-3UTR CCA 90 bp | AGGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTGAAAAACACATCTTTGGGCAGTTaGAGGGGTGGATGGCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: RVTFGKILSLQQGWALKNTSLGS*RGGWRR Trigger: CCTACGCCATCCACCCCTCCAACTGCCCAAAGATGT...GTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS-3UTR GCA 90 bp | ATTGTTAATTTCTATCTCTGTTCAGGTCTGTCCCTTCTATCTCTCCTCAAAGTGCCACGTGGCACACGATaGCAGTCACACTCAGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: IVNFYLCSGLSLLSLLKVPRGTR*QSHSGP Trigger: AGGGCCTGAGTGTGACTGGCATCGTGTGCCACGTGG...CACTTTGAGGAGAGATAGAAGGGACAGACCTGAACAGAGATAGAAATTAACAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR GCA 90 bp | AAAGTAGCCACAGTCTTCTCAGCAAGCCCTTTTCCCACTACCTATCCCCCAGCTCCTAGCCTTCTGATTTaGATGGCTTCTTTTATGAAG | + |
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Preference number: 4 (lower is better) Translates to: KVATVFSASPFPTTYPPAPSLLI*MASFMK Trigger: CTTCATAAAAGAAGCCATGCAAATCAGAAGGCTAGG...AGCTGGGGGATAGGTAGTGGGAAAAGGGCTTGCTGAGAAGACTGTGGCTACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR CCA 90 bp | GTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGGCGCTGAAAAACAGCGGTAAAATACATCTTTaGGCAGTTGGAGGGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: VTFGKILSLQQGWALKNSGKIHL*AVGGVD Trigger: ATCCACCCCTCCAACTGCCCAAAGATGTATTTTACC...GCTGTTTTTCAGCGCCCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS-3UTR CCA 90 bp | GTCTGTTTATTAGTTTGCAGGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGTAAAATACATCTTTaGGCAGTTGGAGGGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: VCLLVCRVTFGKILSLQQGKIHL*AVGGVD Trigger: ATCCACCCCTCCAACTGCCCAAAGATGTATTTTACC...TTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCCTGCAAACTAATAAACAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS GCA 90 bp | CTGGTGACGCTTCAGAGCCGTGGTTATCAGCTTTTCTCGATCCTCTaGCTTCCCCACGTGGCACACGATGCCAGTCACACTCAGGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: LVTLQSRGYQLFSIL*LPHVAHDASHTQAL Trigger: GAGGGCCTGAGTGTGACTGGCATCGTGTGCCACGTGGGGAAGGCAGAGGATCGAGAAAAGCTGATAACCACGGCTCTGAAGCGTCACCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022821.8 ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS TCA 90 bp | CACAGGGAACCGAGTGAAGCCTGCTACAGAACCCACAATCACCACTaGGCCGCCTCCTCGCTTTTCCATCTCTGGCACCACCGCTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: HREPSEACYRTHNHH*AASSLFHLWHHRFN Trigger: ATTAAAGCGGTGGTGCCAGAGATGGAAAAGCGAGGAGGCGGCTCAGTGGTGATTGTGGGTTCTGTAGCAGGCTTCACTCGGTTCCCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226168.2 |
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| CDS GCA 90 bp | ATTGTAAGGACCCAGAGACGTGGTTATCAGCTTTTCTCGATCCTCTaGCTTCCCCACGTGGCACACGATGCCAGTCACACTCAGGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: IVRTQRRGYQLFSIL*LPHVAHDASHTQAL Trigger: GAGGGCCTGAGTGTGACTGGCATCGTGTGCCACGTGGGGAAGGCAGAGGATCGAGAAAAGCTGATAACCACGTCTCTGGGTCCTTACAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226902.2 |
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| CDS TCA 90 bp | AGAAGGGAACCGAGTGAAGCCTGCTACAGAACCCACAATCACCACTaGGCCGCCTCCTCGCTTTTCCATCTCTGGCACCACCGCTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: RREPSEACYRTHNHH*AASSLFHLWHHRFN Trigger: ATTAAAGCGGTGGTGCCAGAGATGGAAAAGCGAGGAGGCGGCTCAGTGGTGATTGTGGGTTCTGTAGCAGGCTTCACTCGGTTCCCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR CAA 90 bp | ACAGTCTTCTCAGCAAGCCCTTTTCCCACTACCTATCCCCCAGCTTCCCGCCCCTTAATGCTCAAAACCTaGTCCCACACCTCCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: TVFSASPFPTTYPPASRPLMLKT*SHTSSV Trigger: CACAGAGGAGGTGTGGGACAAGGTTTTGAGCATTAA...GGGGCGGGAAGCTGGGGGATAGGTAGTGGGAAAAGGGCTTGCTGAGAAGACTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR CAA 90 bp | CCTGTTAGGGAAGGTCACAGTCAGAGATCGCCTTGTGGTTTGTGTAGGTTAGGGTTAATGCTCAAAACCTaGTCCCACACCTCCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: PVREGHSQRSPCGLCRLGLMLKT*SHTSSV Trigger: CACAGAGGAGGTGTGGGACAAGGTTTTGAGCATTAA...CCCTAACCTACACAAACCACAAGGCGATCTCTGACTGTGACCTTCCCTAACAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226168.2 ENSMUST00000226298.2 |
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| CDS-3UTR CAA 90 bp | TTATTAGTTTGCAGGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAGGGTGGCCACTGAGCCGCCTCTaGTCCCACACCTCCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LLVCRVTFGKILSLQQGWPLSRL*SHTSSV Trigger: CACAGAGGAGGTGTGGGACAAGAGGCGGCTCAGTGG...CCACCCTTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCCTGCAAACTAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228353.2 |
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| CDS-3UTR CAA 90 bp | GCAAGGTGTCTCTTTTGTGGGAGAGGACTTGGTAGGATGATGGTAAAATACATCTTAATGCTCAAAACCTaGTCCCACACCTCCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: ARCLFCGRGLGRMMVKYILMLKT*SHTSSV Trigger: CACAGAGGAGGTGTGGGACAAGGTTTTGAGCATTAA...GATGTATTTTACCATCATCCTACCAAGTCCTCTCCCACAAAAGAGACACCTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000226298.2 |
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| CDS-3UTR CAA 90 bp | AAATTGTTAATTTCTATCTCTGTTCAGGTCTGTCCCTTCTATCTCTCCTCAAAGGCACAATCCTCTGGCTaGCCTAGCCTTCTGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: KLLISISVQVCPFYLSSKAQSSG*PSLLIC Trigger: GCAAATCAGAAGGCTAGGCAAGCCAGAGGATTGTGC...CTTTGAGGAGAGATAGAAGGGACAGACCTGAACAGAGATAGAAATTAACAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022821.8 |
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| CDS-3UTR CAA 90 bp | GTCTGTTTATTAGTTTGCAGGGTCACTTTTGGAAAGATTCTTAGTCTACAACAAAGATCGCCTTGTGGTTaGTGTAGGTTAGGGTTCATG | + |
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Preference number: 5 (lower is better) Translates to: VCLLVCRVTFGKILSLQQRSPCG*CRLGFM Trigger: CATGAACCCTAACCTACACAAACCACAAGGCGATCT...TTGTTGTAGACTAAGAATCTTTCCAAAAGTGACCCTGCAAACTAATAAACAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228353.2 |
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| CDS TCA 72 bp | CCGAGTGAAGCCTGCTACAGAACCCACAATCACCACTaGGCCGCCTCCTCGCTTTTCCATCTCTGGCACCAC | + |
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Preference number: 6 (lower is better) Translates to: PSEACYRTHNHH*AASSLFHLWHH Trigger: GTGGTGCCAGAGATGGAAAAGCGAGGAGGCGGCTCAGTGGTGATTGTGGGTTCTGTAGCAGGCTTCACTCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022821.8 ENSMUST00000226168.2 |
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| CDS GCA 72 bp | CTTCAGAGCCGTGGTTATCAGCTTTTCTCGATCCTCTaGCTTCCCCACGTGGCACACGATGCCAGTCACACT | + |
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Preference number: 6 (lower is better) Translates to: LQSRGYQLFSIL*LPHVAHDASHT Trigger: AGTGTGACTGGCATCGTGTGCCACGTGGGGAAGGCAGAGGATCGAGAAAAGCTGATAACCACGGCTCTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022821.8 ENSMUST00000226168.2 ENSMUST00000228353.2 |
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| CDS GCA 72 bp | ACCCAGAGACGTGGTTATCAGCTTTTCTCGATCCTCTaGCTTCCCCACGTGGCACACGATGCCAGTCACACT | + |
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Preference number: 6 (lower is better) Translates to: TQRRGYQLFSIL*LPHVAHDASHT Trigger: AGTGTGACTGGCATCGTGTGCCACGTGGGGAAGGCAGAGGATCGAGAAAAGCTGATAACCACGTCTCTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226902.2 |
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| CDS GCA 72 bp | GCAGTTCACTCGAATGTTCTTCGGGGCCAACTCCGCTaGAAAGTTCTTAGTAAGACCCAGCAAAGCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: AVHSNVLRGQLR*KVLSKTQQSCF Trigger: AAAACAGCTTTGCTGGGTCTTACTAAGAACTTTGCAGCGGAGTTGGCCCCGAAGAACATTCGAGTGAACTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022821.8 ENSMUST00000226902.2 |
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| CDS GCA 72 bp | TCTGATTTGCATGGCTTCTTTTATGAAGTCCTCTCTTaGTTTCTCCTCCCACAACACACTGCTGAATCGAGT | + |
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Preference number: 6 (lower is better) Translates to: SDLHGFFYEVLS*FLLPQHTAESS Trigger: ACTCGATTCAGCAGTGTGTTGTGGGAGGAGAAAGCAAGAGAGGACTTCATAAAAGAAGCCATGCAAATCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022821.8 ENSMUST00000226902.2 |
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