Pregenerated sensors for DEGS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038633Ensembl transcript IDs: ENSMUST00000035295.6, ENSMUST00000133052.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTTATAGGATCATCAGTTACTCAGAGGCAGTTACAACAATGAAATaGCTAGCCCAGCAAGGGCAGCAAACTCACAAAACTCTAATCTGC | + |
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Preference number: 1 (lower is better) Translates to: TYRIISYSEAVTTMK*LAQQGQQTHKTLIC Trigger: GCAGATTAGAGTTTTGTGAGTTTGCTGCCCTTGCTGGGCTAGGCATTTCATTGTTGTAACTGCCTCTGAGTAACTGATGATCCTATAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR CCA 90 bp | TCCTGTTGGACTAAACAAAAGCTCCTCCAGAAAGCACTTCATGTTTaGACCCTTGTCCAAAGACCCTTTGGACTTTGTGATGGAGAATTT | + |
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Preference number: 1 (lower is better) Translates to: SCWTKQKLLQKALHV*TLVQRPFGLCDGEF Trigger: AAATTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGCTTTCTGGAGGAGCTTTTGTTTAGTCCAACAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR CAA 90 bp | GGCTGTCTGAAGGCTGAGGAGCCTCTGATGACACCGAGATCTGAGTaGGCAATCATGCCAGCCCAGCTTCCGAGCATCACTGACCATAAG | + |
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Preference number: 2 (lower is better) Translates to: GCLKAEEPLMTPRSE*AIMPAQLPSITDHK Trigger: CTTATGGTCAGTGATGCTCGGAAGCTGGGCTGGCATGATTGCCAACTCAGATCTCGGTGTCATCAGAGGCTCCTCAGCCTTCAGACAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR GCA 90 bp | CCCTCAGTAACAGTAATAACATCTCGTGAGTGCAGGGGAGTGAGCAAGCACAGCCTGAGTTGGCAATCATaGCAGCCCAGCTTCCGAGCA | + |
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Preference number: 2 (lower is better) Translates to: PSVTVITSRECRGVSKHSLSWQS*QPSFRA Trigger: TGCTCGGAAGCTGGGCTGGCATGATTGCCAACTCAG...GCTGTGCTTGCTCACTCCCCTGCACTCACGAGATGTTATTACTGTTACTGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR GCA 90 bp | ACAATGAAATGCCTAGCCCAGCAAGGGCAGCAAACTCACAAAACTCTAATCTGCATAACATCTCGTGAGTaGAGGGGAGTGAGCAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: TMKCLAQQGQQTHKTLICITSRE*RGVSKH Trigger: GTGCTTGCTCACTCCCCTGCACTCACGAGATGTTAT...GCAGATTAGAGTTTTGTGAGTTTGCTGCCCTTGCTGGGCTAGGCATTTCATTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR GCA 90 bp | CAAGAACACAGTCTGTCAGCTGCTTCCCAGGGAGAGACAAACTGTTCTTCTGTTGTTACAACAATGAAATaGCTAGCCCAGCAAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QEHSLSAASQGETNCSSVVTTMK*LAQQGQ Trigger: CTGCCCTTGCTGGGCTAGGCATTTCATTGTTGTAAC...AACAGAAGAACAGTTTGTCTCTCCCTGGGAAGCAGCTGACAGACTGTGTTCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR TCA 90 bp | GCACTTCATGTTTGGACCCTTGTCCAAAGACCCTTTGGACTTTGTGATGGAGAAAGTAATAACATCTCGTaGGTGCAGGGGAGTGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: ALHVWTLVQRPFGLCDGESNNIS*VQGSEQ Trigger: TTGCTCACTCCCCTGCACTCACGAGATGTTATTACT...TTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR TCA 90 bp | TGTCAGCTGCTTCCCAGGGAGAGACAAACTGTTCTTCTGTTGATATCACGTGGGCCCACTAAGAACAAATaGTTGAATCCAGAGGGAACT | + |
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Preference number: 2 (lower is better) Translates to: CQLLPRERQTVLLLISRGPTKNK*LNPEGT Trigger: AGTTCCCTCTGGATTCAATCATTTGTTCTTAGTGGG...CCCACGTGATATCAACAGAAGAACAGTTTGTCTCTCCCTGGGAAGCAGCTGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR GCA 90 bp | GCCCAGCAAGGGCAGCAAACTCACAAAACTCTAATCTGCATCCTTGGACTCCTGAAGCTTTTTATGATTTaGTCACAGCATGACAGACAC | + |
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Preference number: 2 (lower is better) Translates to: AQQGQQTHKTLICILGLLKLFMI*SQHDRH Trigger: GTGTCTGTCATGCTGTGAGCAAATCATAAAAAGCTT...CAGGAGTCCAAGGATGCAGATTAGAGTTTTGTGAGTTTGCTGCCCTTGCTGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR TCA 72 bp | AGCTGCTTCCCAGGGAGAGACAAACTGTTCTTCTGTTaGTATCACGTGGGGTACCAGAGACAGACCAAAGAA | + |
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Preference number: 3 (lower is better) Translates to: SCFPGRDKLFFC*YHVGYQRQTKE Trigger: TTCTTTGGTCTGTCTCTGGTACCCCACGTGATATCAACAGAAGAACAGTTTGTCTCTCCCTGGGAAGCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR CCA 72 bp | AGGGCAGCAAACTCACAAAACTCTAATCTGCATCCTTaGACTCCTGTTGGACTAAACAAAAGCTCCTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: RAANSQNSNLHP*TPVGLNKSSSR Trigger: TCTGGAGGAGCTTTTGTTTAGTCCAACAGGAGTCCAAGGATGCAGATTAGAGTTTTGTGAGTTTGCTGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR GCA 72 bp | ATCATCAGTTACTCAGAGGCAGTTACAACAATGAAATaGCTAGCCCAGCAAGGGCAGCAAACTCACAAAACT | + |
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Preference number: 3 (lower is better) Translates to: IISYSEAVTTMK*LAQQGQQTHKT Trigger: AGTTTTGTGAGTTTGCTGCCCTTGCTGGGCTAGGCATTTCATTGTTGTAACTGCCTCTGAGTAACTGATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR-3UTR CAA 90 bp | ATATCACGTGGGGTACCAGAGACAGACCAAAGAAATTCCACTAAGGCTAGCTTATTGTCCAAAGACCCTTaGGACTTTGTGATGGAGAAT | + |
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Preference number: 3 (lower is better) Translates to: ISRGVPETDQRNSTKASLLSKDP*DFVMEN Trigger: ATTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAA...TAAGCTAGCCTTAGTGGAATTTCTTTGGTCTGTCTCTGGTACCCCACGTGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR CCA 72 bp | ACTAAACAAAAGCTCCTCCAGAAAGCACTTCATGTTTaGACCCTTGTCCAAAGACCCTTTGGACTTTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: TKQKLLQKALHV*TLVQRPFGLCD Trigger: ATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGCTTTCTGGAGGAGCTTTTGTTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR TCA 72 bp | AGACTTATAAGCCTTCCATTCCCCACTAAGAACAAATaGTTGAATCCAGAGGGAACTCACACAATACTATAT | + |
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Preference number: 3 (lower is better) Translates to: RLISLPFPTKNK*LNPEGTHTILY Trigger: ATATAGTATTGTGTGAGTTCCCTCTGGATTCAATCATTTGTTCTTAGTGGGGAATGGAAGGCTTATAAGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR GCA 90 bp | TGTCAGCTGCTTCCCAGGGAGAGACAAACTGTTCTTCTGTTGATATCACGTGGGTTGCTAAGATCTCCTTaGGCCGGGCGGCGTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CQLLPRERQTVLLLISRGLLRSP*AGRRGA Trigger: AGCCCCACGCCGCCCGGCGCAAGGAGATCTTAGCAA...CCCACGTGATATCAACAGAAGAACAGTTTGTCTCTCCCTGGGAAGCAGCTGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR GCA 90 bp | AAGCCACAGGGTTTCCACAGCCGTGCAAGAACACAGTCTGTCAGCTGCTTCCCATGCCCAGAAATTGGGTaGAAACCCAGGCCAAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: KPQGFHSRARTQSVSCFPCPEIG*KPRPSK Trigger: CTTGCTTGGCCTGGGTTTGCACCCAATTTCTGGGCA...TGGGAAGCAGCTGACAGACTGTGTTCTTGCACGGCTGTGGAAACCCTGTGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | AAGCCACAGGGTTTCCACAGCCGTGCAAGAACACAGTCTGTCAGCTGCTTCCCATTTTCCCAGGAACGTTaGGGAAGTCATGGTGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: KPQGFHSRARTQSVSCFPFSQER*GSHGAR Trigger: ACGAGCACCATGACTTCCCCAACGTTCCTGGGAAAA...TGGGAAGCAGCTGACAGACTGTGTTCTTGCACGGCTGTGGAAACCCTGTGGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | GCACTTCATGTTTGGACCCTTGTCCAAAGACCCTTTGGACTTTGTGATGGAGAACACAGGGCCTTGTGGTaGCCAAAGGGGAAATTGTGG | + |
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Preference number: 4 (lower is better) Translates to: ALHVWTLVQRPFGLCDGEHRALW*PKGKLW Trigger: CCACAATTTCCCCTTTGGCCACCACAAGGCCCTGTG...TTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | CCCTCAGTAACAGTAATAACATCTCGTGAGTGCAGGGGAGTGAGCAAGCACAGCCCAAAGGGGAAATTGTaGGAAATCTCATGGATAGCC | + |
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Preference number: 4 (lower is better) Translates to: PSVTVITSRECRGVSKHSPKGKL*EISWIA Trigger: GGCTATCCATGAGATTTCCCACAATTTCCCCTTTGG...GCTGTGCTTGCTCACTCCCCTGCACTCACGAGATGTTATTACTGTTACTGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | ACAATGAAATGCCTAGCCCAGCAAGGGCAGCAAACTCACAAAACTCTAATCTGCAAAATGCCCAGAAATTaGGTGCAAACCCAGGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TMKCLAQQGQQTHKTLICKMPRN*VQTQAK Trigger: CTTGGCCTGGGTTTGCACCCAATTTCTGGGCATTTT...GCAGATTAGAGTTTTGTGAGTTTGCTGCCCTTGCTGGGCTAGGCATTTCATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | TCCACTCTATCACCTATTTTGAAGCCGTGGACAGGAATTCCTTTGGCTGTGATACGATCTTCCTCACCATaGGCAGGTTTTTCCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: STLSPILKPWTGIPLAVIRSSSP*AGFSQE Trigger: TTCCTGGGAAAAACCTGCCCATGGTGAGGAAGATCG...TATCACAGCCAAAGGAATTCCTGTCCACGGCTTCAAAATAGGTGATAGAGTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | CTGAAGGCTGAGGAGCCTCTGATGACACCGAGATCTGAGTTGGCAATCATGCCAATGTCAAAGGTGATCTaGATCACAGTATTGATGATT | + |
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Preference number: 4 (lower is better) Translates to: LKAEEPLMTPRSELAIMPMSKVI*ITVLMI Trigger: AATCATCAATACTGTGATCCAGATCACCTTTGACAT...TGGCATGATTGCCAACTCAGATCTCGGTGTCATCAGAGGCTCCTCAGCCTTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR TCA 90 bp | TTCATGTTTGGACCCTTGTCCAAAGACCCTTTGGACTTTGTGATGGAGAATTTCCCCAGACAAATTTCCTaGAAGTGGTGCAGAAGAACC | + |
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Preference number: 4 (lower is better) Translates to: FMFGPLSKDPLDFVMENFPRQIS*KWCRRT Trigger: GGTTCTTCTGCACCACTTTCAGGAAATTTGTCTGGG...GAAATTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR GCA 90 bp | GTCTGTCAGCTGCTTCCCAGGGAGAGACAAACTGTTCTTCTGTTGATATCACGTTGTTCGGCTATAAAATaGCCAGAAATTGGGTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: VCQLLPRERQTVLLLISRCSAIK*PEIGCK Trigger: TTTGCACCCAATTTCTGGGCATTTTATAGCCGAACA...ACGTGATATCAACAGAAGAACAGTTTGTCTCTCCCTGGGAAGCAGCTGACAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR CAA 72 bp | AAGCACTTCATGTTTGGACCCTTGTCCAAAGACCCTTaGGACTTTGTGATGGAGAATTTCATCAGTTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: KHFMFGPLSKDP*DFVMENFISFP Trigger: CGGGAAACTGATGAAATTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| 3UTR CAA 72 bp | AAAAGCTCCTCCAGAAAGCACTTCATGTTTGGACCCTaGTCCAAAGACCCTTTGGACTTTGTGATGGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: KSSSRKHFMFGP*SKDPLDFVMEN Trigger: ATTCTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGCTTTCTGGAGGAGCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR TCA 90 bp | AAGCACTTCATGTTTGGACCCTTGTCCAAAGACCCTTTGGACTTTGTGATGGAGGTTTCATCAAGGACTTaGTCTCTGGATACTTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: KHFMFGPLSKDPLDFVMEVSSRT*SLDTLL Trigger: TAGCAAAGTATCCAGAGATCAAGTCCTTGATGAAAC...CTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | ATATCACGTGGGGTACCAGAGACAGACCAAAGAAATTCCACTAAGGCTAGCTTAATCCAGATCAGATTGTaGTCAGGTTTCATCAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: ISRGVPETDQRNSTKASLIQIRL*SGFIKD Trigger: GTCCTTGATGAAACCTGACCACAATCTGATCTGGAT...TAAGCTAGCCTTAGTGGAATTTCTTTGGTCTGTCTCTGGTACCCCACGTGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CCA 90 bp | TCCACTCTATCACCTATTTTGAAGCCGTGGACAGGAATTCCTTTGGCTGTGATAAGCCCTCGAAATCGGTaGGAATATCTACATCAATCT | + |
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Preference number: 4 (lower is better) Translates to: STLSPILKPWTGIPLAVISPRNR*EYLHQS Trigger: AGATTGATGTAGATATTCCCACCGATTTCGAGGGCT...TATCACAGCCAAAGGAATTCCTGTCCACGGCTTCAAAATAGGTGATAGAGTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR TCA 90 bp | AAGCACTTCATGTTTGGACCCTTGTCCAAAGACCCTTTGGACTTTGTGATGGAGTCCAGTCCAAATCTTTaGCTAAGTAAAATGAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: KHFMFGPLSKDPLDFVMESSPNL*LSKMKP Trigger: TGGCTTCATTTTACTTAGTCAAAGATTTGGACTGGA...CTCCATCACAAAGTCCAAAGGGTCTTTGGACAAGGGTCCAAACATGAAGTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CAA 90 bp | CTGAAGGCTGAGGAGCCTCTGATGACACCGAGATCTGAGTTGGCAATCATGCCACGGTTCCACAGGGCCTaGTGGTGGCCAAAGGGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LKAEEPLMTPRSELAIMPRFHRA*WWPKGK Trigger: TTTCCCCTTTGGCCACCACAAGGCCCTGTGGAACCG...TGGCATGATTGCCAACTCAGATCTCGGTGTCATCAGAGGCTCCTCAGCCTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS GCA 90 bp | CTTGATCCAGGAGTTGTAGTGCGGGAGGTCATCGTAGTACTCACTTaGGATCTTCCTCACCATGGGCAGGTTTTTCCCAGGAACGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: LDPGVVVREVIVVLT*DLPHHGQVFPRNVG Trigger: CCCAACGTTCCTGGGAAAAACCTGCCCATGGTGAGGAAGATCGCAAGTGAGTACTACGATGACCTCCCGCACTACAACTCCTGGATCAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS CCA 90 bp | GAGAGGTTAGCAAACATTCCAAACCAGCGGTTCCACAGGGCCTTGTaGTGGCCAAAGGGGAAATTGTGGGAAATCTCATGGATAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: ERLANIPNQRFHRAL*WPKGKLWEISWIAR Trigger: TCTGGCTATCCATGAGATTTCCCACAATTTCCCCTTTGGCCACCACAAGGCCCTGTGGAACCGCTGGTTTGGAATGTTTGCTAACCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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| CDS-3UTR CAA 90 bp | ACAGCCGTGCAAGAACACAGTCTGTCAGCTGCTTCCCAGGGAGAGACAAACTGTGCGAGTAGGGACTTATaGTGTCATCCGTCACAAAGT | + |
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Preference number: 5 (lower is better) Translates to: TAVQEHSLSAASQGETNCASRDL*CHPSQS Trigger: ACTTTGTGACGGATGACACAATAAGTCCCTACTCGC...ACAGTTTGTCTCTCCCTGGGAAGCAGCTGACAGACTGTGTTCTTGCACGGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS-3UTR CAA 90 bp | CCCTCAGTAACAGTAATAACATCTCGTGAGTGCAGGGGAGTGAGCAAGCACAGCTGGCCAAAGGGGAAATaGTGGGAAATCTCATGGATA | + |
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Preference number: 5 (lower is better) Translates to: PSVTVITSRECRGVSKHSWPKGK*WEISWI Trigger: TATCCATGAGATTTCCCACAATTTCCCCTTTGGCCA...GCTGTGCTTGCTCACTCCCCTGCACTCACGAGATGTTATTACTGTTACTGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS CCA 90 bp | GTACCGGTGGTGATCCATGTGGTATCTCTTAAAGGAAATCGAGTATaGCACTCCGAGAGAGAGGTTAGCAAACATTCCAAACCAGCGGTT | + |
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Preference number: 5 (lower is better) Translates to: VPVVIHVVSLKGNRV*HSEREVSKHSKPAV Trigger: AACCGCTGGTTTGGAATGTTTGCTAACCTCTCTCTCGGAGTGCCATACTCGATTTCCTTTAAGAGATACCACATGGATCACCACCGGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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| CDS CAA 72 bp | AGGAGTTGTAGTGCGGGAGGTCATCGTAGTACTCACTaGCGATCTTCCTCACCATGGGCAGGTTTTTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: RSCSAGGHRSTH*RSSSPWAGFSQ Trigger: CTGGGAAAAACCTGCCCATGGTGAGGAAGATCGCAAGTGAGTACTACGATGACCTCCCGCACTACAACTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS CAA 90 bp | AGAGAGAGGTTAGCAAACATTCCAAACCAGCGGTTCCACAGGGCCTaGTGGTGGCCAAAGGGGAAATTGTGGGAAATCTCATGGATAGCC | + |
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Preference number: 6 (lower is better) Translates to: RERLANIPNQRFHRA*WWPKGKLWEISWIA Trigger: GGCTATCCATGAGATTTCCCACAATTTCCCCTTTGGCCACCACAAGGCCCTGTGGAACCGCTGGTTTGGAATGTTTGCTAACCTCTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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| CDS CCA 72 bp | TCTTCCTCACCATGGGCAGGTTTTTCCCAGGAACGTTaGGGAAGTCATGGTGCTCGTTATGATAGCCCACAT | + |
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Preference number: 6 (lower is better) Translates to: SSSPWAGFSQER*GSHGARYDSPH Trigger: ATGTGGGCTATCATAACGAGCACCATGACTTCCCCAACGTTCCTGGGAAAAACCTGCCCATGGTGAGGAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035295.6 |
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| CDS CCA 72 bp | AACATTCCAAACCAGCGGTTCCACAGGGCCTTGTGGTaGCCAAAGGGGAAATTGTGGGAAATCTCATGGATA | + |
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Preference number: 6 (lower is better) Translates to: NIPNQRFHRALW*PKGKLWEISWI Trigger: TATCCATGAGATTTCCCACAATTTCCCCTTTGGCCACCACAAGGCCCTGTGGAACCGCTGGTTTGGAATGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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| CDS CAA 72 bp | TTAGCAAACATTCCAAACCAGCGGTTCCACAGGGCCTaGTGGTGGCCAAAGGGGAAATTGTGGGAAATCTCA | + |
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Preference number: 6 (lower is better) Translates to: LANIPNQRFHRA*WWPKGKLWEIS Trigger: TGAGATTTCCCACAATTTCCCCTTTGGCCACCACAAGGCCCTGTGGAACCGCTGGTTTGGAATGTTTGCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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| CDS TCA 72 bp | TCTACATCAATCTTATCCGCTCCGAGGTACCGGTGGTaGTCCATGTGGTATCTCTTAAAGGAAATCGAGTAT | + |
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Preference number: 6 (lower is better) Translates to: STSILSAPRYRW*SMWYLLKEIEY Trigger: ATACTCGATTTCCTTTAAGAGATACCACATGGATCACCACCGGTACCTCGGAGCGGATAAGATTGATGTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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| CDS CCA 72 bp | CTAAGTAAAATGAAGCCAGCTGGACGAGAAGCATCATaGCTACAATCCAGATCAGATTGTGGTCAGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: LSKMKPAGREAS*LQSRSDCGQVS Trigger: TGAAACCTGACCACAATCTGATCTGGATTGTAGCCATGATGCTTCTCGTCCAGCTGGCTTCATTTTACTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035295.6 ENSMUST00000133052.2 |
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