Pregenerated sensors for CYLC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039555Ensembl transcript IDs: ENSMUST00000156384.4, ENSMUST00000166749.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATGGTCCTATAAACAAACTCAAGGTGTCCTCTCTCTTTTTCCTATaGATGGTGGTCTTTTCTCTCTTATCTTTCCTTCCATCTTTGCCT | + |
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Preference number: 1 (lower is better) Translates to: DGPINKLKVSSLFFL*MVVFSLLSFLPSLP Trigger: AGGCAAAGATGGAAGGAAAGATAAGAGAGAAAAGACCACCATCCATAGGAAAAAGAGAGAGGACACCTTGAGTTTGTTTATAGGACCATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR CCA 90 bp | TTGCACACTTCTTTTATCTCACAGATCAATGTTAAGACTACTGAATaGGTTCACTGTATATGCTTTGGAGTTCTTACCTTCAGTTTGCTT | + |
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Preference number: 1 (lower is better) Translates to: LHTSFISQINVKTTE*VHCICFGVLTFSLL Trigger: AAGCAAACTGAAGGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGATCTGTGAGATAAAAGAAGTGTGCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR-3UTR TCA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCTTCCACATTGTCCAATaGATCCTATGGAGTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: LLLCFLTADLVKTATSHLFHIVQ*ILWSLL Trigger: AAGGAGACTCCATAGGATTCATTGGACAATGTGGAA...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR-3UTR GCA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTTGGGTTCACTGTATATaGTTTGGAGTTCTTACCTTC | + |
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Preference number: 2 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPWVHCI*FGVLTF Trigger: GAAGGTAAGAACTCCAAAGCATATACAGTGAACCCA...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR CAA 90 bp | AGATTTGGGAAACAATGGTCTCTGGTGGTAATATCAACTCTTCTATaGTGGCATTTTGATTTGAAGATGCCAAAAATGTTCATCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: RFGKQWSLVVISTLL*WHFDLKMPKMFIWD Trigger: ATCCCAGATGAACATTTTTGGCATCTTCAAATCAAAATGCCACAATAGAAGAGTTGATATTACCACCAGAGACCATTGTTTCCCAAATCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR-3UTR CAA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCTTACAGAATAGAGATTaGGGAAACAATGGTCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: LLLCFLTADLVKTATSHLLQNRD*GNNGLW Trigger: CCAGAGACCATTGTTTCCCAAATCTCTATTCTGTAA...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR TCA 72 bp | TCTCTGCCAATGATGATGGACATTTCCAGCTTTAGATaGGACTGTGGCTTAGATTACAGAATAGAGATTTGG | + |
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Preference number: 3 (lower is better) Translates to: SLPMMMDISSFR*DCGLDYRIEIW Trigger: CCAAATCTCTATTCTGTAATCTAAGCCACAGTCTCATCTAAAGCTGGAAATGTCCATCATCATTGGCAGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR CCA 72 bp | TCTTTTATCTCACAGATCAATGTTAAGACTACTGAATaGGTTCACTGTATATGCTTTGGAGTTCTTACCTTC | + |
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Preference number: 3 (lower is better) Translates to: SFISQINVKTTE*VHCICFGVLTF Trigger: GAAGGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGATCTGTGAGATAAAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR GCA 72 bp | ATCAATGTTAAGACTACTGAATGGGTTCACTGTATATaGTTTGGAGTTCTTACCTTCAGTTTGCTTTTTGAA | + |
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Preference number: 3 (lower is better) Translates to: INVKTTEWVHCI*FGVLTFSLLFE Trigger: TTCAAAAAGCAAACTGAAGGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR GCA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTCTCATCAGGGAACGGTaGATCCATAATGGTGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPLIRER*IHNGGL Trigger: CAGACCACCATTATGGATGCACCGTTCCCTGATGAG...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CCA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTTTTTCCTGGCCTTGGTaGTTTGGGAAATGCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPFSWPW*FGKCQG Trigger: TCCCTGGCATTTCCCAAACCACCAAGGCCAGGAAAA...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR TCA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTTCCAGATTCTGTGGCTaGCACTTTATCCTTGGATCC | + |
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Preference number: 4 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPSRFCG*HFILGS Trigger: GGATCCAAGGATAAAGTGTCAGCCACAGAATCTGGA...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR TCA 90 bp | TGCTTCTTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCTCCAGATTCTGTGCCTaGCACTTTATCCTTGGATCC | + |
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Preference number: 4 (lower is better) Translates to: CFLSVQAQLHIIKSRDSTSRFCA*HFILGS Trigger: GGATCCAAGGATAAAGTGTCAGGCACAGAATCTGGA...GGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAAGAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR GCA 90 bp | TGCTTCTTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCCACCTCCAGATTCTGTaGCTGACACTTTATCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: CFLSVQAQLHIIKSRDSTHLQIL*LTLYPW Trigger: CCAAGGATAAAGTGTCAGGCACAGAATCTGGAGGTG...GGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAAGAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CCA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCCACCTCCAGATTCTGTaGCTGACACTTTATCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LLLCFLTADLVKTATSHLHLQIL*LTLYPW Trigger: CCAAGGATAAAGTGTCAGCCACAGAATCTGGAGGTG...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR CAA 72 bp | CATCTGGGATTACAGGTGGGTCAGTCTTGTGGTCACTaGAAACTCAGATGGTCCTATAAACAAACTCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: HLGLQVGQSCGH*KLRWSYKQTQG Trigger: ACCTTGAGTTTGTTTATAGGACCATCTGAGTTTCAAGTGACCACAAGACTGACCCACCTGTAATCCCAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR TCA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTTCCAGATTCTGTGGCTaGCACTTTATCCTTGGATTC | + |
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Preference number: 4 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPSRFCG*HFILGF Trigger: GAATCCAAGGATAAAGTGTCAGCCACAGAATCTGGA...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR GCA 90 bp | TGCTTCTTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCTGGTGGTTTGGGAAATaGCAGGGAAAAGTATTGCTG | + |
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Preference number: 4 (lower is better) Translates to: CFLSVQAQLHIIKSRDSTWWFGK*QGKVLL Trigger: CAGCAATACTTTTCCCTGGCATTTCCCAAACCACCA...GGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAAGAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CCA 90 bp | CTACTGAATGGGTTCACTGTATATGCTTTGGAGTTCTTACCTTCAGTTTGCTTTCCTTTGCTTCCTTCTTaGATCCAGCCTTTTCCCCTC | + |
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Preference number: 4 (lower is better) Translates to: LLNGFTVYALEFLPSVCFPLLPS*IQPFPL Trigger: GAGGGGAAAAGGCTGGATCCAAGAAGGAAGCAAAGG...AAAGCAAACTGAAGGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CCA 90 bp | TGCTTCTTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAAATGAAGTGGTTTTaGTATAAGGCCCTTCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: CFLSVQAQLHIIKSRDSTKMKWF*YKALPG Trigger: GCCAGGAAGGGCCTTATACCAAAACCACTTCATTTT...GGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAAGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CCA 90 bp | ATCAATGTTAAGACTACTGAATGGGTTCACTGTATATGCTTTGGAGTTCTTACCCCTTGGCTTCCTTCTTaGATCCAGCCTTTTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: INVKTTEWVHCICFGVLTPWLPS*IQPFHL Trigger: GAGGTGAAAAGGCTGGATCCAAGAAGGAAGCCAAGG...GGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR GCA 90 bp | TGCTTCTTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCTTTCTTCCTTCTTTTTaGCATCTTTGTCAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: CFLSVQAQLHIIKSRDSTFLPSF*HLCQLL Trigger: CAGCAGCTGACAAAGATGGCAAAAAGAAGGAAGAAA...GGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAAGAAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR TCA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTCATAATGGTGGTCTGTaGACTCCTAATTTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPHNGGL*TPNFSS Trigger: TGAAGAAAAATTAGGAGTTCACAGACCACCATTATG...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR TCA 90 bp | ATCAATGTTAAGACTACTGAATGGGTTCACTGTATATGCTTTGGAGTTCTTACCTTCGCCTTCAGAATCTaGAGATACTCTTCCCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: INVKTTEWVHCICFGVLTFAFRI*RYSSLV Trigger: GACAAGGGAAGAGTATCTTCAGATTCTGAAGGCGAA...GGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR GCA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCATCTCCCTTTTCACTTaGAGAATCTTTAACCGTATC | + |
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Preference number: 4 (lower is better) Translates to: LLLCFLTADLVKTATSHLISLFT*RIFNRI Trigger: GATACGGTTAAAGATTCTGCAAGTGAAAAGGGAGAT...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CCA 90 bp | ATCAATGTTAAGACTACTGAATGGGTTCACTGTATATGCTTTGGAGTTCTTACCAATGTTCTTTTTAGCTaGTTTGGGACTTCCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: INVKTTEWVHCICFGVLTNVLFS*FGTSLL Trigger: AAGGAGGGAAGTCCCAAACCAGCTAAAAAGAACATT...GGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| 3UTR CAA 72 bp | AAACAATGGTCTCTGGTGGTAATATCAACTCTTCTATaGTGGCATTTTGATTTGAAGATGCCAAAAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: KQWSLVVISTLL*WHFDLKMPKMF Trigger: GAACATTTTTGGCATCTTCAAATCAAAATGCCACAATAGAAGAGTTGATATTACCACCAGAGACCATTGTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCACCTTGGCTTCCTTCTaGGATCCAGCCTTTTCACCC | + |
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Preference number: 5 (lower is better) Translates to: LLLCFLTADLVKTATSHLTLASF*DPAFSP Trigger: GGGTGAAAAGGCTGGATCCAAGAAGGAAGCCAAGGT...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | CTACTGAATGGGTTCACTGTATATGCTTTGGAGTTCTTACCTTCAGTTTGCTTTCCTGGCCTTGGTGGTTaGGGAAATGCCAGGGAAAAG | + |
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Preference number: 5 (lower is better) Translates to: LLNGFTVYALEFLPSVCFPGLGG*GNAREK Trigger: CTTTTCCCTGGCATTTCCCAAACCACCAAGGCCAGG...AAAGCAAACTGAAGGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTTTGGGACTTCCCTCCTaGTCTGTCTTTAACGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPLGLPS*SVFNAV Trigger: GACAGCGTTAAAGACAGACAAGGAGGGAAGTCCCAA...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | TTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCAAGCCTACCTTTGCTTCCTTCTaGGATCCAGCCTTTTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: LSVQAQLHIIKSRDSTKPTFASF*DPAFSP Trigger: AGGGGAAAAGGCTGGATCCAAGAAGGAAGCAAAGGT...AGGCTTGGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCATTACAGGAGCTGTATaGTTCTGTAACTGGGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: LLLCFLTADLVKTATSHLITGAV*FCNWEG Trigger: ACCTTCCCAGTTACAGAACAATACAGCTCCTGTAAT...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | CTTCTTCTCTGCTTTCTCACTGCAGACTTGGTAAAAACAGCAACTTCACATCTCGAAGATACTCTTCCCTaGTCCTTTTGTGAATCCCTT | + |
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Preference number: 5 (lower is better) Translates to: LLLCFLTADLVKTATSHLEDTLP*SFCESL Trigger: AAGGGATTCACAAAAGGACAAGGGAAGAGTATCTTC...GAGATGTGAAGTTGCTGTTTTTACCAAGTCTGCAGTGAGAAAGCAGAGAAGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS TCA 90 bp | TCGGATATTCTCATCAGGGAACGGTGCATCCATAATGGTGGTCTGTaGACTCCTAATTTTTCTTCATCAATTACAGGAGCTGTATTGTTC | + |
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Preference number: 5 (lower is better) Translates to: SDILIRERCIHNGGL*TPNFSSSITGAVLF Trigger: GAACAATACAGCTCCTGTAATTGATGAAGAAAAATTAGGAGTTCACAGACCACCATTATGGATGCACCGTTCCCTGATGAGAATATCCGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000156384.4 ENSMUST00000166749.2 |
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| CDS-3UTR CAA 90 bp | ATCAATGTTAAGACTACTGAATGGGTTCACTGTATATGCTTTGGAGTTCTTACCGTCTTGGCTTCCTTCTaGGATCCAGCCTTTTCACTT | + |
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Preference number: 5 (lower is better) Translates to: INVKTTEWVHCICFGVLTVLASF*DPAFSL Trigger: AAGTGAAAAGGCTGGATCCAAGAAGGAAGCCAAGAC...GGTAAGAACTCCAAAGCATATACAGTGAACCCATTCAGTAGTCTTAACATTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS-3UTR CAA 90 bp | TGCTTCTTAAGTGTACAAGCTCAGCTGCACATCATTAAATCTAGAGACAGCACCGTATTTTTAACTTTCTaGGATCCCTTCTTCACACCA | + |
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Preference number: 5 (lower is better) Translates to: CFLSVQAQLHIIKSRDSTVFLTF*DPFFTP Trigger: TGGTGTGAAGAAGGGATCCAAGAAAGTTAAAAATAC...GGTGCTGTCTCTAGATTTAATGATGTGCAGCTGAGCTTGTACACTTAAGAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156384.4 |
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| CDS TCA 72 bp | CTCATCAGGGAACGGTGCATCCATAATGGTGGTCTGTaGACTCCTAATTTTTCTTCATCAATTACAGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: LIRERCIHNGGL*TPNFSSSITGA Trigger: AGCTCCTGTAATTGATGAAGAAAAATTAGGAGTTCACAGACCACCATTATGGATGCACCGTTCCCTGATGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000156384.4 ENSMUST00000166749.2 |
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| CDS CAA 72 bp | GGAATGTTCTTTTTAGCTGGTTTGGGACTTCCCTCCTaGTCTGTCTTTAACGCTGTCTTCTCTTTTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: GMFFLAGLGLPS*SVFNAVFSFAS Trigger: TGAAGCAAAAGAGAAGACAGCGTTAAAGACAGACAAGGAGGGAAGTCCCAAACCAGCTAAAAAGAACATTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000156384.4 ENSMUST00000166749.2 |
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| CDS CAA 72 bp | TTTTGTGAATCCCTTGGAATGTTCTTTTTAGCTGGTTaGGGACTTCCCTCCTTGTCTGTCTTTAACGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: FCESLGMFFLAG*GLPSLSVFNAV Trigger: GACAGCGTTAAAGACAGACAAGGAGGGAAGTCCCAAACCAGCTAAAAAGAACATTCCAAGGGATTCACAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000156384.4 ENSMUST00000166749.2 |
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| CDS CAA 90 bp | GAATCCCTTGGAATGTTCTTTTTAGCTGGTTTGGGACTTCCCTCCTaGTCTGTCTTTAACGCTGTCTTCTCTTTTGCTTCAAATCCATCT | + |
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Preference number: 6 (lower is better) Translates to: ESLGMFFLAGLGLPS*SVFNAVFSFASNPS Trigger: AGATGGATTTGAAGCAAAAGAGAAGACAGCGTTAAAGACAGACAAGGAGGGAAGTCCCAAACCAGCTAAAAAGAACATTCCAAGGGATTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000156384.4 ENSMUST00000166749.2 |
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