RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CYB561D1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048796

Ensembl transcript IDs: ENSMUST00000065664.7, ENSMUST00000106654.2, ENSMUST00000106655.2

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTGTCAGCACGCCTGCCCGCCCGCCCACCAGCCCCCGCACCACCTaGGAGGAGGCAACACCTCAGGCAGGCTCAGGCTTTCTGGCATCG +
Preference number: 1 (lower is better)
Translates to: AVSTPARPPTSPRTT*EEATPQAGSGFLAS
Trigger: CGATGCCAGAAAGCCTGAGCCTGCCTGAGGTGTTGCCTCCTCCCAGGTGGTGCGGGGGCTGGTGGGCGGGCGGGCAGGCGTGCTGACAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp CATTCAGCCAGGAGGCATCCGCAGCCGGCAGCCACAGATCCCAGCTaGAGGAAGCGCACCCTGGCACTGAGGACTAATGGCTGTCCAGCT +
Preference number: 1 (lower is better)
Translates to: HSARRHPQPAATDPS*RKRTLALRTNGCPA
Trigger: AGCTGGACAGCCATTAGTCCTCAGTGCCAGGGTGCGCTTCCTCCAGCTGGGATCTGTGGCTGCCGGCTGCGGATGCCTCCTGGCTGAATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp GGTGCCCCCAGAAGCCAAGGCAAGTACACAGGAGCGCTAGAGGCTTaGGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACA +
Preference number: 1 (lower is better)
Translates to: GAPRSQGKYTGALEA*GYQLPRPRPSQLST
Trigger: TGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCCCAAGCCTCTAGCGCTCCTGTGTACTTGCCTTGGCTTCTGGGGGCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp AGGAGACCACCACTACCTGTACTCTTCCTCTGTGCTCTGCACCGATaGCCTCCAGGCCCACTGGTCAGAGGAAGCGACAGCTGGGTCCTT +
Preference number: 1 (lower is better)
Translates to: RRPPLPVLFLCALHR*PPGPLVRGSDSWVL
Trigger: AAGGACCCAGCTGTCGCTTCCTCTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGAAGAGTACAGGTAGTGGTGGTCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp ACCCTGGCACTGAGGACTAATGGCTGTCCAGCTGCTGCCCTAGGATaGAAAGACGGGAGGGAAGAAAGCCCCGCCCCAATCTGGCCTAAC +
Preference number: 1 (lower is better)
Translates to: TLALRTNGCPAAALG*KDGREESPAPIWPN
Trigger: GTTAGGCCAGATTGGGGCGGGGCTTTCTTCCCTCCCGTCTTTCCATCCTAGGGCAGCAGCTGGACAGCCATTAGTCCTCAGTGCCAGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp CAGATCCCTAAGCAGGAGACCACCACTACCTGTACTCTTCCTCTGTaGTCTGCACCGATGCCCTCCAGGCCCACTGGTCAGAGGAAGCGA +
Preference number: 1 (lower is better)
Translates to: QIPKQETTTTCTLPL*SAPMPSRPTGQRKR
Trigger: TCGCTTCCTCTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGAAGAGTACAGGTAGTGGTGGTCTCCTGCTTAGGGATCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp GGCAGCAAGAATCCCGATCCCCTTCTCTCCCACAGTGTCTTCCCATaGTGTTACACTCCAAAGCCCAGGAAGAGGGGGAAGGTGACTGGC +
Preference number: 1 (lower is better)
Translates to: GSKNPDPLLSHSVFP*CYTPKPRKRGKVTG
Trigger: GCCAGTCACCTTCCCCCTCTTCCTGGGCTTTGGAGTGTAACAGCATGGGAAGACACTGTGGGAGAGAAGGGGATCGGGATTCTTGCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR TCA 90 bp TGCTGTTACACTCCAAAGCCCAGGAAGAGGGGGAAGGTGACTGGCTaGCTCAGCCTGCAAGTGCTTAGAGATCTGGAGCTGAAAGGCCCC +
Preference number: 1 (lower is better)
Translates to: CCYTPKPRKRGKVTG*LSLQVLRDLELKGP
Trigger: GGGGCCTTTCAGCTCCAGATCTCTAAGCACTTGCAGGCTGAGTCAGCCAGTCACCTTCCCCCTCTTCCTGGGCTTTGGAGTGTAACAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp ACACTGAGAGATGGGGCAGGGCAGTGTCATGGGCTGAGGGTGGCCTaGTTTGAAGGGCAAAGCAAGAATAGGCTGGCAACTGATAGCAGC +
Preference number: 1 (lower is better)
Translates to: TLRDGAGQCHGLRVA*FEGQSKNRLATDSS
Trigger: GCTGCTATCAGTTGCCAGCCTATTCTTGCTTTGCCCTTCAAAGCAGGCCACCCTCAGCCCATGACACTGCCCTGCCCCATCTCTCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp TGCTCCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTTGATTaGCTCTATCTCCGAGGTAGAAAGCTGCGTGGATACCTTCCCTGG +
Preference number: 1 (lower is better)
Translates to: CSSPYTAGLPPRVFD*LYLRGRKLRGYLPW
Trigger: CCAGGGAAGGTATCCACGCAGCTTTCTACCTCGGAGATAGAGCCAATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp CCACGTTCACAGCACACTGGATGGCTTGAGCCGGAGAGAGGGCTTTaGAAAAGCCAAGAACAGTTAGTTCCCCTCTGCACTGCAGGGACC +
Preference number: 1 (lower is better)
Translates to: PRSQHTGWLEPERGL*KSQEQLVPLCTAGT
Trigger: GGTCCCTGCAGTGCAGAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp CTGTACTCTTCCTCTGTGCTCTGCACCGATGCCCTCCAGGCCCACTaGTCAGAGGAAGCGACAGCTGGGTCCTTTCTTCCTGCAGAATAT +
Preference number: 1 (lower is better)
Translates to: LYSSSVLCTDALQAH*SEEATAGSFLPAEY
Trigger: ATATTCTGCAGGAAGAAAGGACCCAGCTGTCGCTTCCTCTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGAAGAGTACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR TCA 90 bp CCCCCTAGTCCCCATTCCTCTACTGAATCCCACCTGCCTTGCTTCTaGGCCACTGGGAGAAGAGGATCTGAGATAGGCAAGCAGACACCT +
Preference number: 1 (lower is better)
Translates to: PPSPHSSTESHLPCF*ATGRRGSEIGKQTP
Trigger: AGGTGTCTGCTTGCCTATCTCAGATCCTCTTCTCCCAGTGGCTCAGAAGCAAGGCAGGTGGGATTCAGTAGAGGAATGGGGACTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp AGAGGATCTGAGATAGGCAAGCAGACACCTTGTCTCTGGAACTGGTaGTCCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTTGAT +
Preference number: 1 (lower is better)
Translates to: RGSEIGKQTPCLWNW*SSPYTAGLPPRVFD
Trigger: ATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGGAGCACCAGTTCCAGAGACAAGGTGTCTGCTTGCCTATCTCAGATCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp AGAAGAGGATCTGAGATAGGCAAGCAGACACCTTGTCTCTGGAACTaGTGCTCCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTT +
Preference number: 1 (lower is better)
Translates to: RRGSEIGKQTPCLWN*CSSPYTAGLPPRVF
Trigger: AAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGGAGCACCAGTTCCAGAGACAAGGTGTCTGCTTGCCTATCTCAGATCCTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR TCA 90 bp TCAGAGGAAGCGACAGCTGGGTCCTTTCTTCCTGCAGAATATAAATaGCTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCAC +
Preference number: 1 (lower is better)
Translates to: SEEATAGSFLPAEYK*LPFLPGLRIDIRWH
Trigger: GTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGTCATTTATATTCTGCAGGAAGAAAGGACCCAGCTGTCGCTTCCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp GTGACTTCAGTGCCTTTACTACCTTATTGTCCAGGAGACCTCCCCTaGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGG +
Preference number: 1 (lower is better)
Translates to: VTSVPLLPYCPGDLP*VPSFHSSCVALVSW
Trigger: CCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGGAGGTCTCCTGGACAATAAGGTAGTAAAGGCACTGAAGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 90 bp GAAGGGCAAAGCAAGAATAGGCTGGCAACTGATAGCAGCCTATTGTaGATGGGGCGTCAGCCAGAGGGAAGCAAGAGTTCTCAGATGCAG +
Preference number: 1 (lower is better)
Translates to: EGQSKNRLATDSSLL*MGRQPEGSKSSQMQ
Trigger: CTGCATCTGAGAACTCTTGCTTCCCTCTGGCTGACGCCCCATCCACAATAGGCTGCTATCAGTTGCCAGCCTATTCTTGCTTTGCCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp TATTGTCCAGGAGACCTCCCCTGGGTCCCTTCTTTCCACAGTTCGTaGGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACATAATT +
Preference number: 1 (lower is better)
Translates to: YCPGDLPWVPSFHSS*VALVSWFRNQVDII
Trigger: AATTATGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGGAGGTCTCCTGGACAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR GCA 90 bp CCGGAGAGAGGGCTTTGGAAAAGCCAAGAACAGTTAGTTCCCCTCTaGACTGCAGGGACCTCTGTTCATCAAGCTGTATTTAGAGAGTCA +
Preference number: 1 (lower is better)
Translates to: PERGLWKSQEQLVPL*TAGTSVHQAVFRES
Trigger: TGACTCTCTAAATACAGCTTGATGAACAGAGGTCCCTGCAGTGCAGAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 90 bp GATTGGCTCTATCTCCGAGGTAGAAAGCTGCGTGGATACCTTCCCTaGTTCAGCAGTCTTCAGTCTTTATTAGGATCTATAGAGAGCCCA +
Preference number: 1 (lower is better)
Translates to: DWLYLRGRKLRGYLP*FSSLQSLLGSIESP
Trigger: TGGGCTCTCTATAGATCCTAATAAAGACTGAAGACTGCTGAACCAGGGAAGGTATCCACGCAGCTTTCTACCTCGGAGATAGAGCCAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 90 bp ACAGTAGCAGCTAGGGTTTCTGCACATTGTGGCTCAGCCATGAAGTaGAAAAATTCATCTACTTCTGAAGTGGGTCCTGTGAAGATCACC +
Preference number: 1 (lower is better)
Translates to: TVAARVSAHCGSAMK*KNSSTSEVGPVKIT
Trigger: GGTGATCTTCACAGGACCCACTTCAGAAGTAGATGAATTTTTGCACTTCATGGCTGAGCCACAATGTGCAGAAACCCTAGCTGCTACTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR TCA 90 bp TCAGACACCAATGTTAAAGATAAGGGACCTTCAGATGTCAGAAACTaGGGTCCTAAGATATGGAACTTGTCTAAGGTTGATTGTACAGCA +
Preference number: 1 (lower is better)
Translates to: SDTNVKDKGPSDVRN*GPKIWNLSKVDCTA
Trigger: TGCTGTACAATCAACCTTAGACAAGTTCCATATCTTAGGACCTCAGTTTCTGACATCTGAAGGTCCCTTATCTTTAACATTGGTGTCTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CAA 90 bp GGGTGCCCCCAGAAGCCAAGGCAAGTACACAGGAGCGCTAGAGGCTaGGGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCAC +
Preference number: 2 (lower is better)
Translates to: GCPQKPRQVHRSARG*GLSATTATAISAEH
Trigger: GTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCCCAAGCCTCTAGCGCTCCTGTGTACTTGCCTTGGCTTCTGGGGGCACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp ACTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCACAGCCCACGCAAGGGCATCTCCCCCTTTaGGCCCACTGTATCATGCCT +
Preference number: 2 (lower is better)
Translates to: TPLPPGAANRHQMAQPTQGHLPL*AHCIMP
Trigger: AGGCATGATACAGTGGGCTCAAAGGGGGAGATGCCC...TTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTGGCACAGCAGCCAGCTaGCTCAGGGAGGATGCCTGG +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSGTAAS*LREDAW
Trigger: CCAGGCATCCTCCCTGAGCCAGCTGGCTGCTGTGCC...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTACAGCCCACGCAAACTaGCGGCTGTCAGCACGCCTG +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSTAHAN*RLSARL
Trigger: CAGGCGTGCTGACAGCCGGCAGTTTGCGTGGGCTGT...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTCTCCTCCTGGTGCCCTaGCCCCTACACTACGGTCAG +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSLLLVP*PLHYGQ
Trigger: CTGACCGTAGTGTAGGGGGCAGGGCACCAGGAGGAG...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTGCCCTCCAGGCCCACTaGTCAGAGGAAGCGACAGCT +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSALQAH*SEEATA
Trigger: AGCTGTCGCTTCCTCTGACCAGTGGGCCTGGAGGGC...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTGCCACAGATCCCAGCTaGAGGAAGCGCACCCTGGCA +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSATDPS*RKRTLA
Trigger: TGCCAGGGTGCGCTTCCTCCAGCTGGGATCTGTGGC...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp ACTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCACAGCCCACGCAATACCCAGAGGTAGCCTaGAGGAAGTCCTTAGCTCAG +
Preference number: 2 (lower is better)
Translates to: TPLPPGAANRHQMAQPTQYPEVA*RKSLAQ
Trigger: CTGAGCTAAGGACTTCCTTCAGGCTACCTCTGGGTA...TTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CTGTCCAGCTGCTGCCCTAGGATGGAAAGACGGGAGGGAAGAAAGCCCCGCCCCCCGGAGAGAGGGCTTTaGAAAAGCCAAGAACAGTTA +
Preference number: 2 (lower is better)
Translates to: LSSCCPRMERREGRKPRPPERGL*KSQEQL
Trigger: TAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGG...GGGGCGGGGCTTTCTTCCCTCCCGTCTTTCCATCCTAGGGCAGCAGCTGGACAG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTGGGGACACTGAGAGATaGGGCAGGGCAGTGTCATGG +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSGDTER*GRAVSW
Trigger: CCATGACACTGCCCTGCCCCATCTCTCAGTGTCCCC...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGTTGTACAGCACTGCCTaGGAGGTTACGGGCTCTCGA +
Preference number: 2 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQLYSTA*EVTGSR
Trigger: TCGAGAGCCCGTAACCTCTCAGGCAGTGCTGTACAA...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTCCAGGAGACCTCCCCTaGGTCCCTTCTTTCCACAGT +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSPGDLP*VPSFHS
Trigger: ACTGTGGAAAGAAGGGACCCAGGGGAGGTCTCCTGG...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CGTTCACAGCACACTGGATGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAACAGACACCTTGTCTCTaGAACTGGTGCTCCAGCCCC +
Preference number: 2 (lower is better)
Translates to: RSQHTGWLEPERGLWKSQQTPCL*NWCSSP
Trigger: GGGGCTGGAGCACCAGTTCCAGAGACAAGGTGTCTG...TTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTGAGGGGGAAGGTGACTaGCTGACTCAGCCTGCAAGT +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSEGEGD*LTQPAS
Trigger: ACTTGCAGGCTGAGTCAGCCAGTCACCTTCCCCCTC...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 90 bp ACTGGTGCTCCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTaGATTGGCTCTATCTCCGAGGTAGAAAGCTGCGTGGATACCTTC +
Preference number: 2 (lower is better)
Translates to: TGAPAPILQASLPEC*IGSISEVESCVDTF
Trigger: GAAGGTATCCACGCAGCTTTCTACCTCGGAGATAGAGCCAATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGGAGCACCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp TGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAAGAACAGTTAGTTCCCCTCCACCTGCCTTGCTTCTaGGCCACTGGGAGAAGAGGA +
Preference number: 2 (lower is better)
Translates to: WLEPERGLWKSQEQLVPLHLPCF*ATGRRG
Trigger: TCCTCTTCTCCCAGTGGCTCAGAAGCAAGGCAGGTG...GAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp ACTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCACAGCCCACGCAACACAGCTTACTAATCTaGCATGTAACCCTCACAACC +
Preference number: 2 (lower is better)
Translates to: TPLPPGAANRHQMAQPTQHSLLI*HVTLTT
Trigger: GGTTGTGAGGGTTACATGTCAGATTAGTAAGCTGTG...TTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTATCGCCTCTGTGCTCTaGGAACAAGCTGCTGAACCT +
Preference number: 2 (lower is better)
Translates to: GLSATTATAISAEHTVFSIASVL*EQAAEP
Trigger: AGGTTCAGCAGCTTGTTCTCAGAGCACAGAGGCGAT...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 90 bp CTTTGCCAGGCTGATACACCTTCCAGTTCAGGACACACAGGATCTTaGTTCCAGCCACAGACCAGGGCATTGCGGGGGTACAAACTCAGA +
Preference number: 2 (lower is better)
Translates to: LCQADTPSSSGHTGS*FQPQTRALRGYKLR
Trigger: TCTGAGTTTGTACCCCCGCAATGCCCTGGTCTGTGGCTGGAACAAAGATCCTGTGTGTCCTGAACTGGAAGGTGTATCAGCCTGGCAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp TGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAAGAACAGTTAGTTCCCCTCTCCCCATTCCTCTACTaGATCCCACCTGCCTTGCTT +
Preference number: 2 (lower is better)
Translates to: WLEPERGLWKSQEQLVPLSPFLY*IPPALL
Trigger: AAGCAAGGCAGGTGGGATTCAGTAGAGGAATGGGGA...GAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CTGTCCAGCTGCTGCCCTAGGATGGAAAGACGGGAGGGAAGAAAGCCCCGCCCCTTAAGAATAGTTCCATaGAGCAACATGCCAAGTAAG +
Preference number: 2 (lower is better)
Translates to: LSSCCPRMERREGRKPRPLRIVP*SNMPSK
Trigger: CTTACTTGGCATGTTGCTCCATGGAACTATTCTTAA...GGGGCGGGGCTTTCTTCCCTCCCGTCTTTCCATCCTAGGGCAGCAGCTGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 90 bp GTTCTCCCAAACCTTCCACTTGTACCCAGTAGGGCATCTCCCCCTTaGAGCCCACTGTATCATGCCTCAACAGTAGCAGCTAGGGTTTCT +
Preference number: 2 (lower is better)
Translates to: VLPNLPLVPSRASPP*SPLYHASTVAARVS
Trigger: AGAAACCCTAGCTGCTACTGTTGAGGCATGATACAGTGGGCTCAAAGGGGGAGATGCCCTACTGGGTACAAGTGGAAGGTTTGGGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGGGCATCTCCCCCTTTaGGCCCACTGTATCATGCCT +
Preference number: 2 (lower is better)
Translates to: KWMRELHPELPTWSRAKRGHLPL*AHCIMP
Trigger: AGGCATGATACAGTGGGCTCAAAGGGGGAGATGCCC...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp CTCACAGTTTATTGCCTCTGTAGGAAGCATAAAGGCCAGAGCCGGAGTCGGAGAACATGCCAAGTAAGATaGCCAGGACCACTCTGCCCT +
Preference number: 2 (lower is better)
Translates to: LTVYCLCRKHKGQSRSRRTCQVR*PGPLCP
Trigger: AGGGCAGAGTGGTCCTGGGCATCTTACTTGGCATGT...TCTCCGACTCCGGCTCTGGCCTTTATGCTTCCTACAGAGGCAATAAACTGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp CGTTCACAGCACACTGGATGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAATTCCATGGAGCAACATaGCAAGTAAGATGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: RSQHTGWLEPERGLWKSQFHGAT*QVRCPG
Trigger: TCCTGGGCATCTTACTTGGCATGTTGCTCCATGGAA...TTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTCCAGGAGACCTCCCCTaGGTCCCTTCTTTCCACAGT +
Preference number: 2 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSPGDLP*VPSFHS
Trigger: ACTGTGGAAAGAAGGGACCCAGGGGAGGTCTCCTGG...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 90 bp TTTGAAGGGCAAAGCAAGAATAGGCTGGCAACTGATAGCAGCCTATaGTGGATGGGGCGTCAGCCAGAGGGAAGCAAGAGTTCTCAGATG +
Preference number: 2 (lower is better)
Translates to: FEGQSKNRLATDSSL*WMGRQPEGSKSSQM
Trigger: CATCTGAGAACTCTTGCTTCCCTCTGGCTGACGCCCCATCCACAATAGGCTGCTATCAGTTGCCAGCCTATTCTTGCTTTGCCCTTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGTTGTACAGCACTGCCTaGGAGGTTACGGGCTCTCGA +
Preference number: 2 (lower is better)
Translates to: KWMRELHPELPTWSRAKRLYSTA*EVTGSR
Trigger: TCGAGAGCCCGTAACCTCTCAGGCAGTGCTGTACAA...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AGTTCTCAGATGCAGAGCTCCTGTCATTTGTTCACTGCCACCCCAACCCCAATAATCGCCTCTGTGCTCTaGGAACAAGCTGCTGAACCT +
Preference number: 2 (lower is better)
Translates to: SSQMQSSCHLFTATPTPIIASVL*EQAAEP
Trigger: AGGTTCAGCAGCTTGTTCTCAGAGCACAGAGGCGAT...TATTGGGGTTGGGGTGGCAGTGAACAAATGACAGGAGCTCTGCATCTGAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp AGTTCTCAGATGCAGAGCTCCTGTCATTTGTTCACTGCCACCCCAACCCCAATATGTCTCTGGAACTGGTaGTCCAGCCCCTATACTGCA +
Preference number: 2 (lower is better)
Translates to: SSQMQSSCHLFTATPTPICLWNW*SSPYTA
Trigger: TGCAGTATAGGGGCTGGAGCACCAGTTCCAGAGACA...TATTGGGGTTGGGGTGGCAGTGAACAAATGACAGGAGCTCTGCATCTGAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCGCCCTCCAGGCCCACTaGTCAGAGGAAGCGACAGCT +
Preference number: 2 (lower is better)
Translates to: LSNALKVESEYSQAWNTIALQAH*SEEATA
Trigger: AGCTGTCGCTTCCTCTGACCAGTGGGCCTGGAGGGC...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGGGCATCTCCCCCTTTaGGCCCACTGTATCATGCCT +
Preference number: 2 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSGHLPL*AHCIMP
Trigger: AGGCATGATACAGTGGGCTCAAAGGGGGAGATGCCC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTTCCCCATTCCTCTACTaGATCCCACCTGCCTTGCTT +
Preference number: 2 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSSPFLY*IPPALL
Trigger: AAGCAAGGCAGGTGGGATTCAGTAGAGGAATGGGGA...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCAGCGCACCCTGGCACTaGGGACTAATGGCTGTCCAG +
Preference number: 2 (lower is better)
Translates to: LSNALKVESEYSQAWNTISAPWH*GLMAVQ
Trigger: CTGGACAGCCATTAGTCCTCAGTGCCAGGGTGCGCT...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGGCTCAGCCATGAAGTaGAAAAATTCATCTACTTCT +
Preference number: 2 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQGSAMK*KNSSTS
Trigger: AGAAGTAGATGAATTTTTGCACTTCATGGCTGAGCC...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGGAGTAGAGGGAAAATaGATGAGAGAATTACATCCT +
Preference number: 2 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQGVEGK*MRELHP
Trigger: AGGATGTAATTCTCTCATCCATTTTCCCTCTACTCC...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CTCACAGTTTATTGCCTCTGTAGGAAGCATAAAGGCCAGAGCCGGAGTCGGAGACCTAGTCAAGGAACATaGCCAAAGGACAGCCATTTG +
Preference number: 2 (lower is better)
Translates to: LTVYCLCRKHKGQSRSRRPSQGT*PKDSHL
Trigger: CAAATGGCTGTCCTTTGGCCATGTTCCTTGACTAGG...TCTCCGACTCCGGCTCTGGCCTTTATGCTTCCTACAGAGGCAATAAACTGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACATCACCAAGGAACTGTTaGAATCCAAGGCAAGACTCC +
Preference number: 2 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTSPRNC*NPRQDS
Trigger: GGAGTCTTGCCTTGGATTTCAACAGTTCCTTGGTGA...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCTGGCTGTCCAGCTGCTaGCCTAGGATGGAAAGACGG +
Preference number: 2 (lower is better)
Translates to: LSNALKVESEYSQAWNTIWLSSC*PRMERR
Trigger: CCGTCTTTCCATCCTAGGGCAGCAGCTGGACAGCCA...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp TGGAACTGGTGCTCCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTTGATTTAAGAATAGTTCCATaGAGCAACATGCCAAGTAAG +
Preference number: 2 (lower is better)
Translates to: WNWCSSPYTAGLPPRVFDLRIVP*SNMPSK
Trigger: CTTACTTGGCATGTTGCTCCATGGAACTATTCTTAA...ATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGGAGCACCAGTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp AGTTCTCAGATGCAGAGCTCCTGTCATTTGTTCACTGCCACCCCAACCCCAATACCCAGAGTGTTTGATTaGCTCTATCTCCGAGGTAGA +
Preference number: 2 (lower is better)
Translates to: SSQMQSSCHLFTATPTPIPRVFD*LYLRGR
Trigger: TCTACCTCGGAGATAGAGCCAATCAAACACTCTGGG...TATTGGGGTTGGGGTGGCAGTGAACAAATGACAGGAGCTCTGCATCTGAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCCAGACACCTTGTCTCTaGAACTGGTGCTCCAGCCCC +
Preference number: 2 (lower is better)
Translates to: LSNALKVESEYSQAWNTIQTPCL*NWCSSP
Trigger: GGGGCTGGAGCACCAGTTCCAGAGACAAGGTGTCTG...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTTCACCAAGGAACTGTTaGAATCCAAGGCAAGACTCC +
Preference number: 2 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSSPRNC*NPRQDS
Trigger: GGAGTCTTGCCTTGGATTTCAACAGTTCCTTGGTGA...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp CACCATTACCACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTTCACCAAGGAACTGTTaGAATCCAAGGCAAGACTCC +
Preference number: 2 (lower is better)
Translates to: HHYHHLILLSPTKSEVSGSPRNC*NPRQDS
Trigger: GGAGTCTTGCCTTGGATTTCAACAGTTCCTTGGTGA...ACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTGGTAATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp TGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAAGAACAGTTAGTTCCCCTCAAATTCATCTACTTCTaGAGTGGGTCCTGTGAAGAT +
Preference number: 2 (lower is better)
Translates to: WLEPERGLWKSQEQLVPLKFIYF*SGSCED
Trigger: ATCTTCACAGGACCCACTTCAGAAGTAGATGAATTT...GAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp ATCTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCACCCGGTGAGGTCCACTaGGAATACTTCTGCCCCCTA +
Preference number: 2 (lower is better)
Translates to: IFLMPSRLSLNIVKLGTPPGEVH*EYFCPL
Trigger: TAGGGGGCAGAAGTATTCTCAGTGGACCTCACCGGG...TGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTCCGGAGAGAGGGCTTTaGAAAAGCCAAGAACAGTTA +
Preference number: 2 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSPERGL*KSQEQL
Trigger: TAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGG...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp GAGTCGGAGAGAAAAGGACAGAGCATAGCATCTGTTTTCCATTTGTTTAATGCTCTCAGGGAGGATGCCTaGATCTCCCACAGCGAGGTT +
Preference number: 2 (lower is better)
Translates to: ESERKGQSIASVFHLFNALREDA*ISHSEV
Trigger: AACCTCGCTGTGGGAGATCCAGGCATCCTCCCTGAG...AGCATTAAACAAATGGAAAACAGATGCTATGCTCTGTCCTTTTCTCTCCGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp ATCTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATGCCCAGGACCACTCTaGCCTGAGAATGAATGGCAG +
Preference number: 2 (lower is better)
Translates to: IFLMPSRLSLNIVKLGTPCPGPL*PENEWQ
Trigger: CTGCCATTCATTCTCAGGGCAGAGTGGTCCTGGGCA...TGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCCAGTTAGTTCCCCTCTaGACTGCAGGGACCTCTGTT +
Preference number: 2 (lower is better)
Translates to: LSNALKVESEYSQAWNTIQLVPL*TAGTSV
Trigger: AACAGAGGTCCCTGCAGTGCAGAGGGGAACTAACTG...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp CTCACAGTTTATTGCCTCTGTAGGAAGCATAAAGGCCAGAGCCGGAGTCGGAGAGGAGTAGAGGGAAAATaGATGAGAGAATTACATCCT +
Preference number: 2 (lower is better)
Translates to: LTVYCLCRKHKGQSRSRRGVEGK*MRELHP
Trigger: AGGATGTAATTCTCTCATCCATTTTCCCTCTACTCC...TCTCCGACTCCGGCTCTGGCCTTTATGCTTCCTACAGAGGCAATAAACTGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTTCAGATGTCAGAAACTaGGGTCCTAAGATATGGAAC +
Preference number: 2 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSSDVRN*GPKIWN
Trigger: GTTCCATATCTTAGGACCTCAGTTTCTGACATCTGA...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGTCAGATGTCAGAAACTaGGGTCCTAAGATATGGAAC +
Preference number: 2 (lower is better)
Translates to: KWMRELHPELPTWSRAKRSDVRN*GPKIWN
Trigger: GTTCCATATCTTAGGACCTCAGTTTCTGACATCTGA...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACAGGCTCAGCCATGAAGTaGAAAAATTCATCTACTTCT +
Preference number: 2 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTGSAMK*KNSSTS
Trigger: AGAAGTAGATGAATTTTTGCACTTCATGGCTGAGCC...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR GCA 90 bp ATCTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCAACATGCCAAGTAAGATaGCCAGGACCACTCTGCCCT +
Preference number: 2 (lower is better)
Translates to: IFLMPSRLSLNIVKLGTPTCQVR*PGPLCP
Trigger: AGGGCAGAGTGGTCCTGGGCATCTTACTTGGCATGT...TGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp ATCTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATGCCCTGAGAATGAATaGCAGGAGCATACCCAGAGG +
Preference number: 2 (lower is better)
Translates to: IFLMPSRLSLNIVKLGTPCPENE*QEHTQR
Trigger: CCTCTGGGTATGCTCCTGCCATTCATTCTCAGGGCA...TGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCCACAGCTTACTAATCTaGCATGTAACCCTCACAACC +
Preference number: 2 (lower is better)
Translates to: LSNALKVESEYSQAWNTIHSLLI*HVTLTT
Trigger: GGTTGTGAGGGTTACATGTCAGATTAGTAAGCTGTG...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CCA 90 bp ATCTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCACCCAGAGTGTTTGATTaGCTCTATCTCCGAGGTAGA +
Preference number: 2 (lower is better)
Translates to: IFLMPSRLSLNIVKLGTPPRVFD*LYLRGR
Trigger: TCTACCTCGGAGATAGAGCCAATCAAACACTCTGGG...TGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 90 bp AGAAAAGGACAGAGCATAGCATCTGTTTTCCATTTGTTTAATGCTTaGAGCCTTGTTCTCTTGAGGAATCCTCACAACATCCCTGTGAGG +
Preference number: 2 (lower is better)
Translates to: RKGQSIASVFHLFNA*SLVLLRNPHNIPVR
Trigger: CCTCACAGGGATGTTGTGAGGATTCCTCAAGAGAACAAGGCTCAAAGCATTAAACAAATGGAAAACAGATGCTATGCTCTGTCCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR-3UTR TCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAAAATTCATCTACTTCTaGAGTGGGTCCTGTGAAGAT +
Preference number: 2 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSKFIYF*SGSCED
Trigger: ATCTTCACAGGACCCACTTCAGAAGTAGATGAATTT...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp AGGAGGCATCCGCAGCCGGCAGCCACAGATCCCAGCTaGAGGAAGCGCACCCTGGCACTGAGGACTAATGGC +
Preference number: 3 (lower is better)
Translates to: RRHPQPAATDPS*RKRTLALRTNG
Trigger: GCCATTAGTCCTCAGTGCCAGGGTGCGCTTCCTCCAGCTGGGATCTGTGGCTGCCGGCTGCGGATGCCTCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 72 bp CTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATaGCACAGCCCACGCAAACTGCCGGCTGTCAGCACG +
Preference number: 3 (lower is better)
Translates to: LPFLPGLRIDIR*HSPRKLPAVST
Trigger: CGTGCTGACAGCCGGCAGTTTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 72 bp TCCTCTGTGCTCTGCACCGATGCCCTCCAGGCCCACTaGTCAGAGGAAGCGACAGCTGGGTCCTTTCTTCCT +
Preference number: 3 (lower is better)
Translates to: SSVLCTDALQAH*SEEATAGSFLP
Trigger: AGGAAGAAAGGACCCAGCTGTCGCTTCCTCTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 72 bp TGGAAAGACGGGAGGGAAGAAAGCCCCGCCCCAATCTaGCCTAACAGGAAGAAGGGCTCCTCCTGGTGCCCT +
Preference number: 3 (lower is better)
Translates to: WKDGREESPAPI*PNRKKGSSWCP
Trigger: AGGGCACCAGGAGGAGCCCTTCTTCCTGTTAGGCCAGATTGGGGCGGGGCTTTCTTCCCTCCCGTCTTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp GGAGACCACCACTACCTGTACTCTTCCTCTGTGCTCTaGACCGATGCCCTCCAGGCCCACTGGTCAGAGGAA +
Preference number: 3 (lower is better)
Translates to: GDHHYLYSSSVL*TDALQAHWSEE
Trigger: TTCCTCTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGAAGAGTACAGGTAGTGGTGGTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp AAGCAGGAGACCACCACTACCTGTACTCTTCCTCTGTaGTCTGCACCGATGCCCTCCAGGCCCACTGGTCAG +
Preference number: 3 (lower is better)
Translates to: KQETTTTCTLPL*SAPMPSRPTGQ
Trigger: CTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGAAGAGTACAGGTAGTGGTGGTCTCCTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp GTACTCTTCCTCTGTGCTCTGCACCGATGCCCTCCAGGCCCACTGGTCAGAGGAGTTCGTGCGTGGCCCTaGTTTCTTGGTTCAGGAACC +
Preference number: 3 (lower is better)
Translates to: VLFLCALHRCPPGPLVRGVRAWP*FLGSGT
Trigger: GGTTCCTGAACCAAGAAACAAGGGCCACGCACGAAC...TCCTCTGACCAGTGGGCCTGGAGGGCATCGGTGCAGAGCACAGAGGAAGAGTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGAGGGCATCTCCCCCTTaGAGCCCACTGTATCATGCC +
Preference number: 3 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQRASPP*SPLYHA
Trigger: GGCATGATACAGTGGGCTCAAAGGGGGAGATGCCCT...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp AGAAGCCAAGGCAAGTACACAGGAGCGCTAGAGGCTTaGGGTTATCAGCTACCACGGCCACGGCCATCTCAG +
Preference number: 3 (lower is better)
Translates to: RSQGKYTGALEA*GYQLPRPRPSQ
Trigger: CTGAGATGGCCGTGGCCGTGGTAGCTGATAACCCCAAGCCTCTAGCGCTCCTGTGTACTTGCCTTGGCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTAGCACACTGGATGGCTaGAGCCGGAGAGAGGGCTTT +
Preference number: 3 (lower is better)
Translates to: GLSATTATAISAEHTVFSSTLDG*SRREGF
Trigger: AAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCT...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR TCA 72 bp ACTCCAAAGCCCAGGAAGAGGGGGAAGGTGACTGGCTaGCTCAGCCTGCAAGTGCTTAGAGATCTGGAGCTG +
Preference number: 3 (lower is better)
Translates to: TPKPRKRGKVTG*LSLQVLRDLEL
Trigger: CAGCTCCAGATCTCTAAGCACTTGCAGGCTGAGTCAGCCAGTCACCTTCCCCCTCTTCCTGGGCTTTGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp TGCCCCCTAGTCCCCATTCCTCTACTGAATCCCACCTaGCTTGCTTCTGAGCCACTGGGAGAAGAGGATCTG +
Preference number: 3 (lower is better)
Translates to: CPLVPIPLLNPT*LASEPLGEEDL
Trigger: CAGATCCTCTTCTCCCAGTGGCTCAGAAGCAAGGCAGGTGGGATTCAGTAGAGGAATGGGGACTAGGGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp GGAGACCTCCCCTGGGTCCCTTCTTTCCACAGTTCGTaGGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTT +
Preference number: 3 (lower is better)
Translates to: GDLPWVPSFHSS*VALVSWFRNQV
Trigger: AACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGGAGGTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR GCA 72 bp GGAGCAACATGCCAAGTAAGATGCCCAGGACCACTCTaGCCTGAGAATGAATGGCAGGAGCATACCCAGAGG +
Preference number: 3 (lower is better)
Translates to: GATCQVRCPGPL*PENEWQEHTQR
Trigger: CCTCTGGGTATGCTCCTGCCATTCATTCTCAGGGCAGAGTGGTCCTGGGCATCTTACTTGGCATGTTGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp GTGCCTTTACTACCTTATTGTCCAGGAGACCTCCCCTaGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTT +
Preference number: 3 (lower is better)
Translates to: VPLLPYCPGDLP*VPSFHSSCVAL
Trigger: AAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGGAGGTCTCCTGGACAATAAGGTAGTAAAGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp TGGCCTGACTGCTTCCTCTCAGAGGAGAAAAGCCTCTaGTATAGCCAGGCAGCAAGAATCCCGATCCCCTTC +
Preference number: 3 (lower is better)
Translates to: WPDCFLSEEKSL*YSQAARIPIPF
Trigger: GAAGGGGATCGGGATTCTTGCTGCCTGGCTATACCAGAGGCTTTTCTCCTCTGAGAGGAAGCAGTCAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR TCA 72 bp CCTGCCTTGCTTCTGAGCCACTGGGAGAAGAGGATCTaGGATAGGCAAGCAGACACCTTGTCTCTGGAACTG +
Preference number: 3 (lower is better)
Translates to: PALLLSHWEKRI*DRQADTLSLEL
Trigger: CAGTTCCAGAGACAAGGTGTCTGCTTGCCTATCTCAGATCCTCTTCTCCCAGTGGCTCAGAAGCAAGGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 72 bp ACCTCCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTaGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACA +
Preference number: 3 (lower is better)
Translates to: TSPGSLLSTVRA*PLFLGSGTKLT
Trigger: TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp CCCTATACTGCAGGCCTCCCTCCCAGAGTGTTTGATTaGCTCTATCTCCGAGGTAGAAAGCTGCGTGGATAC +
Preference number: 3 (lower is better)
Translates to: PYTAGLPPRVFD*LYLRGRKLRGY
Trigger: GTATCCACGCAGCTTTCTACCTCGGAGATAGAGCCAATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp CAGGGCATTGCGGGGGTACAAACTCAGACACTTTCTTaGTCTCAAGACTTGCTTAAGGGCATTTGGGTGGGG +
Preference number: 3 (lower is better)
Translates to: QGIAGVQTQTLS*SQDLLKGIWVG
Trigger: CCCCACCCAAATGCCCTTAAGCAAGTCTTGAGAGCAAGAAAGTGTCTGAGTTTGTACCCCCGCAATGCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 72 bp AGCAAGAATAGGCTGGCAACTGATAGCAGCCTATTGTaGATGGGGCGTCAGCCAGAGGGAAGCAAGAGTTCT +
Preference number: 3 (lower is better)
Translates to: SKNRLATDSSLL*MGRQPEGSKSS
Trigger: AGAACTCTTGCTTCCCTCTGGCTGACGCCCCATCCACAATAGGCTGCTATCAGTTGCCAGCCTATTCTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CCA 72 bp TTTCTTGCTCTCAAGACTTGCTTAAGGGCATTTGGGTaGGGTGCCCCCAGAAGCCAAGGCAAGTACACAGGA +
Preference number: 3 (lower is better)
Translates to: FLALKTCLRAFG*GAPRSQGKYTG
Trigger: TCCTGTGTACTTGCCTTGGCTTCTGGGGGCACCCCACCCAAATGCCCTTAAGCAAGTCTTGAGAGCAAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGATCACCAAGGAACTGTaGAAATCCAAGGCAAGACTC +
Preference number: 3 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQITKEL*KSKARL
Trigger: GAGTCTTGCCTTGGATTTCAACAGTTCCTTGGTGAT...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp AGTTCTCAGATGCAGAGCTCCTGTCATTTGTTCACTGCCACCCCAACCCCAATAGTTCGTGCGTGGCCCTaGTTTCTTGGTTCAGGAACC +
Preference number: 3 (lower is better)
Translates to: SSQMQSSCHLFTATPTPIVRAWP*FLGSGT
Trigger: GGTTCCTGAACCAAGAAACAAGGGCCACGCACGAAC...TATTGGGGTTGGGGTGGCAGTGAACAAATGACAGGAGCTCTGCATCTGAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp CTCACAGTTTATTGCCTCTGTAGGAAGCATAAAGGCCAGAGCCGGAGTCGGAGAGCCGGAGAGAGGGCTTaGGAAAAGCCAAGAACAGTT +
Preference number: 3 (lower is better)
Translates to: LTVYCLCRKHKGQSRSRRAGERA*EKPRTV
Trigger: AACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGC...TCTCCGACTCCGGCTCTGGCCTTTATGCTTCCTACAGAGGCAATAAACTGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp ACTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCACAGCCCACGCAACCTAAGATATGGAACTaGTCTAAGGTTGATTGTACA +
Preference number: 3 (lower is better)
Translates to: TPLPPGAANRHQMAQPTQPKIWN*SKVDCT
Trigger: TGTACAATCAACCTTAGACAAGTTCCATATCTTAGG...TTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR TCA 72 bp CGGAGCCGAGCCACTCATAAAGTAGCTTTGCCAGGCTaGTACACCTTCCAGTTCAGGACACACAGGATCTTT +
Preference number: 3 (lower is better)
Translates to: RSRATHKVALPG*YTFQFRTHRIF
Trigger: AAAGATCCTGTGTGTCCTGAACTGGAAGGTGTATCAGCCTGGCAAAGCTACTTTATGAGTGGCTCGGCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp CTTCAGTCTTTATTAGGATCTATAGAGAGCCCATCTCCTAGACTGACCTACACCAGGGCATCTCCCCCTTaGAGCCCACTGTATCATGCC +
Preference number: 3 (lower is better)
Translates to: LQSLLGSIESPSPRLTYTRASPP*SPLYHA
Trigger: GGCATGATACAGTGGGCTCAAAGGGGGAGATGCCCT...GGTGTAGGTCAGTCTAGGAGATGGGCTCTCTATAGATCCTAATAAAGACTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp CTTACTAATCTGACATGTAACCCTCACAACCAAGGATaGGCTAGGGAACTCAGATCAAGGAGGTACATCGGC +
Preference number: 3 (lower is better)
Translates to: LTNLTCNPHNQG*ARELRSRRYIG
Trigger: GCCGATGTACCTCCTTGATCTGAGTTCCCTAGCGCATCCTTGGTTGTGAGGGTTACATGTCAGATTAGTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp GGGCTTTGGAAAAGCCAAGAACAGTTAGTTCCCCTCTaGACTGCAGGGACCTCTGTTCATCAAGCTGTATTT +
Preference number: 3 (lower is better)
Translates to: GLWKSQEQLVPL*TAGTSVHQAVF
Trigger: AAATACAGCTTGATGAACAGAGGTCCCTGCAGTGCAGAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGATCACCAAGGAACTGTaGAAATCCAAGGCAAGACTC +
Preference number: 3 (lower is better)
Translates to: MRELHPELPTWSRAKRVSITKEL*KSKARL
Trigger: GAGTCTTGCCTTGGATTTCAACAGTTCCTTGGTGAT...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGATCACCAAGGAACTGTaGAAATCCAAGGCAAGACTC +
Preference number: 3 (lower is better)
Translates to: KWMRELHPELPTWSRAKRITKEL*KSKARL
Trigger: GAGTCTTGCCTTGGATTTCAACAGTTCCTTGGTGAT...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp AGTTCTCAGATGCAGAGCTCCTGTCATTTGTTCACTGCCACCCCAACCCCAATACTAATGCCCTCAAGGTaGAGTCTGAATATAGTCAAG +
Preference number: 3 (lower is better)
Translates to: SSQMQSSCHLFTATPTPILMPSR*SLNIVK
Trigger: CTTGACTATATTCAGACTCAACCTTGAGGGCATTAG...TATTGGGGTTGGGGTGGCAGTGAACAAATGACAGGAGCTCTGCATCTGAGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR GCA 72 bp GCTAGGGTTTCTGCACATTGTGGCTCAGCCATGAAGTaGAAAAATTCATCTACTTCTGAAGTGGGTCCTGTG +
Preference number: 3 (lower is better)
Translates to: ARVSAHCGSAMK*KNSSTSEVGPV
Trigger: CACAGGACCCACTTCAGAAGTAGATGAATTTTTGCACTTCATGGCTGAGCCACAATGTGCAGAAACCCTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATaGTCCAGAGCTAAGAGGGTATCGGCAACATCAATC +
Preference number: 3 (lower is better)
Translates to: KWMRELHPELPT*SRAKRVSATSI
Trigger: GATTGATGTTGCCGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACACCTAAGATATGGAACTaGTCTAAGGTTGATTGTACA +
Preference number: 3 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTPKIWN*SKVDCT
Trigger: TGTACAATCAACCTTAGACAAGTTCCATATCTTAGG...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR TCA 72 bp TGGCTCAGCCATGAAGTGCAAAAATTCATCTACTTCTaGAGTGGGTCCTGTGAAGATCACCAAGGAACTGTT +
Preference number: 3 (lower is better)
Translates to: WLSHEVQKFIYF*SGSCEDHQGTV
Trigger: AACAGTTCCTTGGTGATCTTCACAGGACCCACTTCAGAAGTAGATGAATTTTTGCACTTCATGGCTGAGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CCA 72 bp TATCTCCGAGGTAGAAAGCTGCGTGGATACCTTCCCTaGTTCAGCAGTCTTCAGTCTTTATTAGGATCTATA +
Preference number: 3 (lower is better)
Translates to: YLRGRKLRGYLP*FSSLQSLLGSI
Trigger: TATAGATCCTAATAAAGACTGAAGACTGCTGAACCAGGGAAGGTATCCACGCAGCTTTCTACCTCGGAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR-3UTR CAA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGCCTAAGATATGGAACTaGTCTAAGGTTGATTGTACA +
Preference number: 3 (lower is better)
Translates to: KWMRELHPELPTWSRAKRPKIWN*SKVDCT
Trigger: TGTACAATCAACCTTAGACAAGTTCCATATCTTAGG...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp TGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAAGAACAGTTAGTTCCCCTCGAGGCGAGCCACCCTTaGGACCCGGGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: WLEPERGLWKSQEQLVPLEASHP*DPGCSW
Trigger: CCACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTC...GAGGGGAACTAACTGTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGGAGGCGAGCCACCCTTaGGACCCGGGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: MRELHPELPTWSRAKRVSEASHP*DPGCSW
Trigger: CCACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTC...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CTCACAGTTTATTGCCTCTGTAGGAAGCATAAAGGCCAGAGCCGGAGTCGGAGAGCGCCAAGATCCCACTaGCTCTCCGCAGCCAGCGGG +
Preference number: 4 (lower is better)
Translates to: LTVYCLCRKHKGQSRSRRAPRSH*LSAASG
Trigger: CCCGCTGGCTGCGGAGAGGCAGTGGGATCTTGGCGC...TCTCCGACTCCGGCTCTGGCCTTTATGCTTCCTACAGAGGCAATAAACTGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp CTGTCCAGCTGCTGCCCTAGGATGGAAAGACGGGAGGGAAGAAAGCCCCGCCCCCAGTCAGAAAGATGGTaGAGCCCAAAGCTATCAGGT +
Preference number: 4 (lower is better)
Translates to: LSSCCPRMERREGRKPRPQSERW*SPKLSG
Trigger: ACCTGATAGCTTTGGGCTTCACCATCTTTCTGACTG...GGGGCGGGGCTTTCTTCCCTCCCGTCTTTCCATCCTAGGGCAGCAGCTGGACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CGTTCACAGCACACTGGATGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAAGCAGAGCCCACACAGTaGCTGTCCTCCAGTGGCCAA +
Preference number: 4 (lower is better)
Translates to: RSQHTGWLEPERGLWKSQAEPTQ*LSSSGQ
Trigger: TTGGCCACTGGAGGACAGGCACTGTGTGGGCTCTGC...TTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTCACAGAGGATGGCCATaGTCTGCCCTGCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: GLSATTATAISAEHTVFSHRGWP*SALPSG
Trigger: TCCACTGGGCAGGGCAGACCATGGCCATCCTCTGTG...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACAGACCCGGGCTGCTCGTaGACAGAGGAGGCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTDPGCS*TEEAEP
Trigger: GGGCTCTGCCTCCTCTGTCCACGAGCAGCCCGGGTC...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp AGTTCTCAGATGCAGAGCTCCTGTCATTTGTTCACTGCCACCCCAACCCCAATAGACCCGGGCTGCTCGTaGACAGAGGAGGCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: SSQMQSSCHLFTATPTPIDPGCS*TEEAEP
Trigger: GGGCTCTGCCTCCTCTGTCCACGAGCAGCCCGGGTC...TATTGGGGTTGGGGTGGCAGTGAACAAATGACAGGAGCTCTGCATCTGAGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp ACTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCACAGCCCACGCAAGCTGTACCTTTGATCTaGGCCTGGAACCACACTGAG +
Preference number: 4 (lower is better)
Translates to: TPLPPGAANRHQMAQPTQAVPLI*AWNHTE
Trigger: CTCAGTGTGGTTCCAGGCCCAGATCAAAGGTACAGC...TTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 72 bp CAGAAGCCAAGGCAAGTACACAGGAGCGCTAGAGGCTaGGGGTTATCAGCTACCACGGCCACGGCCATCTCA +
Preference number: 4 (lower is better)
Translates to: QKPRQVHRSARG*GLSATTATAIS
Trigger: TGAGATGGCCGTGGCCGTGGTAGCTGATAACCCCAAGCCTCTAGCGCTCCTGTGTACTTGCCTTGGCTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGTCTGCCCTGCCCAGTaGAGTCGAATCCGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQVCPAQ*SRIRVF
Trigger: AAAAACCCGGATTCGACTCCACTGGGCAGGGCAGAC...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CAA 72 bp CCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTaGATTGGCTCTATCTCCGAGGTAGAAAGCTGCGTG +
Preference number: 4 (lower is better)
Translates to: PAPILQASLPEC*IGSISEVESCV
Trigger: CACGCAGCTTTCTACCTCGGAGATAGAGCCAATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGAGGCGAGCCACCCTTaGGACCCGGGCTGCTCGTGG +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSEASHP*DPGCSW
Trigger: CCACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CGTTCACAGCACACTGGATGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAACCCAAAGCTATCAGGTaGGCCAAGATCCCACTGCCT +
Preference number: 4 (lower is better)
Translates to: RSQHTGWLEPERGLWKSQPKAIR*AKIPLP
Trigger: AGGCAGTGGGATCTTGGCGCACCTGATAGCTTTGGG...TTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACAGGACAGCACAGAGGATaGCCATGGTCTGCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTGQHRG*PWSALP
Trigger: GGGCAGGGCAGACCATGGCCATCCTCTGTGCTGTCC...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGCTGTACCTTTGATCTaGGCCTGGAACCACACTGAG +
Preference number: 4 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQAVPLI*AWNHTE
Trigger: CTCAGTGTGGTTCCAGGCCCAGATCAAAGGTACAGC...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CAA 72 bp AACCATCCCCTCCACGTTCACAGCACACTGGATGGCTaGAGCCGGAGAGAGGGCTTTGGAAAAGCCAAGAAC +
Preference number: 4 (lower is better)
Translates to: NHPLHVHSTLDG*SRREGFGKAKN
Trigger: GTTCTTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACGTGGAGGGGATGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 72 bp GCTGATACACCTTCCAGTTCAGGACACACAGGATCTTaGTTCCAGCCACAGACCAGGGCATTGCGGGGGTAC +
Preference number: 4 (lower is better)
Translates to: ADTPSSSGHTGS*FQPQTRALRGY
Trigger: GTACCCCCGCAATGCCCTGGTCTGTGGCTGGAACAAAGATCCTGTGTGTCCTGAACTGGAAGGTGTATCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACAAGGATGGCCATGGTCTaGCCTGCCCAGTGGAGTCGA +
Preference number: 4 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTRMAMV*PAQWSR
Trigger: TCGACTCCACTGGGCAGGGCAGACCATGGCCATCCT...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGAGGATGGCCATGGTCTaGCCTGCCCAGTGGAGTCGA +
Preference number: 4 (lower is better)
Translates to: MRELHPELPTWSRAKRVSRMAMV*PAQWSR
Trigger: TCGACTCCACTGGGCAGGGCAGACCATGGCCATCCT...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGCACAGAGGATGGCCATaGTCTGCCCTGCCCAGTGGA +
Preference number: 4 (lower is better)
Translates to: MRELHPELPTWSRAKRVSHRGWP*SALPSG
Trigger: TCCACTGGGCAGGGCAGACCATGGCCATCCTCTGTG...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGACCCGGGCTGCTCGTaGACAGAGGAGGCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSDPGCS*TEEAEP
Trigger: GGGCTCTGCCTCCTCTGTCCACGAGCAGCCCGGGTC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CCCCTGGGTCCCTTCTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGCTCCACCTTCTTCCTTaGCAAGTAGGAGCTGGAGAT +
Preference number: 4 (lower is better)
Translates to: PLGPFFPQFVRGPCFLVQLHLLP*QVGAGD
Trigger: ATCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAG...CTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAGAAGGGACCCAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp TGGAACTGGTGCTCCAGCCCCTATACTGCAGGCCTCCCTCCCAGAGTGTTTGATCTCCACCTTCTTCCTTaGCAAGTAGGAGCTGGAGAT +
Preference number: 4 (lower is better)
Translates to: WNWCSSPYTAGLPPRVFDLHLLP*QVGAGD
Trigger: ATCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAG...ATCAAACACTCTGGGAGGGAGGCCTGCAGTATAGGGGCTGGAGCACCAGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTTCTCCCAAATCTCGGCTCCCTCGCTaGAGCGGGAACCAGACCTAC +
Preference number: 4 (lower is better)
Translates to: HHLILLSPTKSEVSGSPKSRLPR*SGNQTY
Trigger: GTAGGTCTGGTTCCCGCTCCAGCGAGGGAGCCGAGA...TTTGGGAGAACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
3UTR CAA 72 bp TCCTTAGCTCAGCTAAGGAGCCCAGGAGGCAAGGGCTaGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: SLAQLRSPGGKG*VRLLPSVPLKN
Trigger: GTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCCCTTGCCTCCTGGGCTCCTTAGCTGAGCTAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGCAGAGCCCACACAGTaGCTGTCCTCCAGTGGCCAA +
Preference number: 4 (lower is better)
Translates to: KWMRELHPELPTWSRAKRAEPTQ*LSSSGQ
Trigger: TTGGCCACTGGAGGACAGGCACTGTGTGGGCTCTGC...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp GGGTTATCAGCTACCACGGCCACGGCCATCTCAGCTGAGCACACTGTATTCTCTACCACACTGAGTACATaGCCAAGAGCACCGTTACTG +
Preference number: 4 (lower is better)
Translates to: GLSATTATAISAEHTVFSTTLST*PRAPLL
Trigger: CAGTAACGGTGCTCTTGGGCATGTACTCAGTGTGGT...AGAGAATACAGTGTGCTCAGCTGAGATGGCCGTGGCCGTGGTAGCTGATAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
3UTR CAA 72 bp AACCTTCCACTTGTACCCAGTAGGGCATCTCCCCCTTaGAGCCCACTGTATCATGCCTCAACAGTAGCAGCT +
Preference number: 4 (lower is better)
Translates to: NLPLVPSRASPP*SPLYHASTVAA
Trigger: AGCTGCTACTGTTGAGGCATGATACAGTGGGCTCAAAGGGGGAGATGCCCTACTGGGTACAAGTGGAAGGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CAA 72 bp CAAAGCAAGAATAGGCTGGCAACTGATAGCAGCCTATaGTGGATGGGGCGTCAGCCAGAGGGAAGCAAGAGT +
Preference number: 4 (lower is better)
Translates to: QSKNRLATDSSL*WMGRQPEGSKS
Trigger: ACTCTTGCTTCCCTCTGGCTGACGCCCCATCCACAATAGGCTGCTATCAGTTGCCAGCCTATTCTTGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGTCAGATGGTAGAGCTTaGGGCGAGCCACCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: MRELHPELPTWSRAKRVSSDGRA*GEPPLR
Trigger: TCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGA...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTGGCCTGGAACCACACTaGGTACATGCCCAAGAGCAC +
Preference number: 4 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSGLEPH*VHAQEH
Trigger: GTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCC...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACAACCAGGCTGTACCTTTaGTCTGGGCCTGGAACCACA +
Preference number: 4 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTTRLYL*SGPGTT
Trigger: TGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGT...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGTGGAGATCTGGTGCATaGTCACCAGGGCTGGGTACA +
Preference number: 4 (lower is better)
Translates to: MRELHPELPTWSRAKRVSWRSGA*SPGLGT
Trigger: TGTACCCAGCCCTGGTGATCATGCACCAGATCTCCA...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGGCTCCTATCCAGCTGTaGCAGGACACCAAATGGGAC +
Preference number: 4 (lower is better)
Translates to: MRELHPELPTWSRAKRVSAPIQL*QDTKWD
Trigger: GTCCCATTTGGTGTCCTGGCACAGCTGGATAGGAGC...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CACCATTACCACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTGAGCTGGAGATCTGGTaGATGATCACCAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: HHYHHLILLSPTKSEVSGELEIW*MITRAG
Trigger: CCCAGCCCTGGTGATCATGCACCAGATCTCCAGCTC...ACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTGGTAATGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTTCTCCCAAAGAGCTGGAGATCTGGTaGATGATCACCAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: HHLILLSPTKSEVSGSPKELEIW*MITRAG
Trigger: CCCAGCCCTGGTGATCATGCACCAGATCTCCAGCTC...TTTGGGAGAACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTGAGCTGGAGATCTGGTaGATGATCACCAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSELEIW*MITRAG
Trigger: CCCAGCCCTGGTGATCATGCACCAGATCTCCAGCTC...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGGACAGCACAGAGGATaGCCATGGTCTGCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSGQHRG*PWSALP
Trigger: GGGCAGGGCAGACCATGGCCATCCTCTGTGCTGTCC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp CACCATTACCACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTACCAGGCTGTACCTTTaGTCTGGGCCTGGAACCACA +
Preference number: 4 (lower is better)
Translates to: HHYHHLILLSPTKSEVSGTRLYL*SGPGTT
Trigger: TGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGT...ACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTGGTAATGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp AATGAGGAAAGGAGATGGGCGCCCTTTATCAAAGTGACCCTAGTAAGAGGGTCTTGGAGATCTGGTGCATaGTCACCAGGGCTGGGTACA +
Preference number: 4 (lower is better)
Translates to: NEERRWAPFIKVTLVRGSWRSGA*SPGLGT
Trigger: TGTACCCAGCCCTGGTGATCATGCACCAGATCTCCA...AGACCCTCTTACTAGGGTCACTTTGATAAAGGGCGCCCATCTCCTTTCCTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CTTCAGTCTTTATTAGGATCTATAGAGAGCCCATCTCCTAGACTGACCTACACCGCAGAGCCCACACAGTaGCTGTCCTCCAGTGGCCAA +
Preference number: 4 (lower is better)
Translates to: LQSLLGSIESPSPRLTYTAEPTQ*LSSSGQ
Trigger: TTGGCCACTGGAGGACAGGCACTGTGTGGGCTCTGC...GGTGTAGGTCAGTCTAGGAGATGGGCTCTCTATAGATCCTAATAAAGACTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp TTTAAAGTGACTTCAGTGCCTTTACTACCTTATTGTCCAGGAGACCTCCCCTGGTCAGATGGTAGAGCTTaGGGCGAGCCACCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: FKVTSVPLLPYCPGDLPWSDGRA*GEPPLR
Trigger: TCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGA...CCAGGGGAGGTCTCCTGGACAATAAGGTAGTAAAGGCACTGAAGTCACTTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGGCCTGGAACCACACTaGGTACATGCCCAAGAGCAC +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSGLEPH*VHAQEH
Trigger: GTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp CTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCATCGGCCTGGAACCACACTaGGTACATGCCCAAGAGCAC +
Preference number: 4 (lower is better)
Translates to: LSNALKVESEYSQAWNTIGLEPH*VHAQEH
Trigger: GTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCC...GATGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAACCAGGCTGTACCTTTaGTCTGGGCCTGGAACCACA +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSTRLYL*SGPGTT
Trigger: TGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGT...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCATGGAGATCTGGTGCATaGTCACCAGGGCTGGGTACA +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSWRSGA*SPGLGT
Trigger: TGTACCCAGCCCTGGTGATCATGCACCAGATCTCCA...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp ATCTTTCTAATGCCCTCAAGGTTGAGTCTGAATATAGTCAAGCTTGGAACACCAAGGATGGCCATGGTCTaGCCTGCCCAGTGGAGTCGA +
Preference number: 4 (lower is better)
Translates to: IFLMPSRLSLNIVKLGTPRMAMV*PAQWSR
Trigger: TCGACTCCACTGGGCAGGGCAGACCATGGCCATCCT...TGGTGTTCCAAGCTTGACTATATTCAGACTCAACCTTGAGGGCATTAGAAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGCTCCTATCCAGCTGTaGCAGGACACCAAATGGGAC +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSAPIQL*QDTKWD
Trigger: GTCCCATTTGGTGTCCTGGCACAGCTGGATAGGAGC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp CACCATTACCACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTACCACACTGAGTACATaGCCAAGAGCACCGTTACTG +
Preference number: 4 (lower is better)
Translates to: HHYHHLILLSPTKSEVSGTTLST*PRAPLL
Trigger: CAGTAACGGTGCTCTTGGGCATGTACTCAGTGTGGT...ACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTGGTAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp CTTCAGTCTTTATTAGGATCTATAGAGAGCCCATCTCCTAGACTGACCTACACCGTCTGCCCTGCCCAGTaGAGTCGAATCCGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: LQSLLGSIESPSPRLTYTVCPAQ*SRIRVF
Trigger: AAAAACCCGGATTCGACTCCACTGGGCAGGGCAGAC...GGTGTAGGTCAGTCTAGGAGATGGGCTCTCTATAGATCCTAATAAAGACTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAGTCTGCCCTGCCCAGTaGAGTCGAATCCGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSVCPAQ*SRIRVF
Trigger: AAAAACCCGGATTCGACTCCACTGGGCAGGGCAGAC...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp TTTAAAGTGACTTCAGTGCCTTTACTACCTTATTGTCCAGGAGACCTCCCCTGGGCTGTACCTTTGATCTaGGCCTGGAACCACACTGAG +
Preference number: 4 (lower is better)
Translates to: FKVTSVPLLPYCPGDLPWAVPLI*AWNHTE
Trigger: CTCAGTGTGGTTCCAGGCCCAGATCAAAGGTACAGC...CCAGGGGAGGTCTCCTGGACAATAAGGTAGTAAAGGCACTGAAGTCACTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CCA 90 bp AAATGGATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGCTCCACCTTCTTCCTTaGCAAGTAGGAGCTGGAGAT +
Preference number: 4 (lower is better)
Translates to: KWMRELHPELPTWSRAKRLHLLP*QVGAGD
Trigger: ATCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAG...CCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCATCCATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CAA 72 bp AGGACAGCCATTTGTGTTCCTGCTAAGGCCCCTTCCTaGCTACTGAGAAGCCCAGGTAGTATTCAGACATTA +
Preference number: 4 (lower is better)
Translates to: RTAICVPAKAPS*LLRSPGSIQTL
Trigger: TAATGTCTGAATACTACCTGGGCTTCTCAGTAGCAAGGAAGGGGCCTTAGCAGGAACACAAATGGCTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR TCA 90 bp GAGTCGGAGAGAAAAGGACAGAGCATAGCATCTGTTTTCCATTTGTTTAATGCTAGAACGCCAAGGCCATaGACACAGGGTGCCAGGAGA +
Preference number: 4 (lower is better)
Translates to: ESERKGQSIASVFHLFNARTPRP*TQGARR
Trigger: TCTCCTGGCACCCTGTGTTCATGGCCTTGGCGTTCT...AGCATTAAACAAATGGAAAACAGATGCTATGCTCTGTCCTTTTCTCTCCGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS-3UTR GCA 90 bp TTTAAAGTGACTTCAGTGCCTTTACTACCTTATTGTCCAGGAGACCTCCCCTGGACCACACTGAGTACATaGCCAAGAGCACCGTTACTG +
Preference number: 4 (lower is better)
Translates to: FKVTSVPLLPYCPGDLPWTTLST*PRAPLL
Trigger: CAGTAACGGTGCTCTTGGGCATGTACTCAGTGTGGT...CCAGGGGAGGTCTCCTGGACAATAAGGTAGTAAAGGCACTGAAGTCACTTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
3UTR CAA 72 bp GAAACTGAGGTCCTAAGATATGGAACTTGTCTAAGGTaGATTGTACAGCACTGCCTGAGAGGTTACGGGCTC +
Preference number: 4 (lower is better)
Translates to: ETEVLRYGTCLR*IVQHCLRGYGL
Trigger: GAGCCCGTAACCTCTCAGGCAGTGCTGTACAATCAACCTTAGACAAGTTCCATATCTTAGGACCTCAGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 90 bp AACCAGGCCACACGTCAGATGGTAGAGCTTGAGGCGAGCCACCCTTaGGACCCGGGCTGCTCGTGGACAGAGGAGGCAGAGCCCACACAG +
Preference number: 5 (lower is better)
Translates to: NQATRQMVELEASHP*DPGCSWTEEAEPTQ
Trigger: CTGTGTGGGCTCTGCCTCCTCTGTCCACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGACGTGTGGCCTGGTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 90 bp CTGGGTACAATGGTAGTCCCAGGCACAGGTACCAGGCTGTACCTTTaGTCTGGGCCTGGAACCACACTGAGTACATGCCCAAGAGCACCG +
Preference number: 5 (lower is better)
Translates to: LGTMVVPGTGTRLYL*SGPGTTLSTCPRAP
Trigger: CGGTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGTACCTGTGCCTGGGACTACCATTGTACCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 90 bp AGAAAAGACTGGTTCCGGGCCGGGACAGCACAGTCAGAAAGATGGTaGAGCCCAAAGCTATCAGGTGCGCCAAGATCCCACTGCCTCTCC +
Preference number: 5 (lower is better)
Translates to: RKDWFRAGTAQSERW*SPKLSGAPRSHCLS
Trigger: GGAGAGGCAGTGGGATCTTGGCGCACCTGATAGCTTTGGGCTTCACCATCTTTCTGACTGTGCTGTCCCGGCCCGGAACCAGTCTTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS GCA 90 bp ATGATGAAGCCCAAGCCTAGGACAGCACAGAGGATGGCCATGGTCTaGCCTGCCCAGTGGAGTCGAATCCGGGTTTTTCGAGAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: MMKPKPRTAQRMAMV*PAQWSRIRVFREQK
Trigger: CTTCTGCTCTCGAAAAACCCGGATTCGACTCCACTGGGCAGGGCAGACCATGGCCATCCTCTGTGCTGTCCTAGGCTTGGGCTTCATCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS CCA 90 bp AAGCCTAGGACAGCACAGAGGATGGCCATGGTCTGCCCTGCCCAGTaGAGTCGAATCCGGGTTTTTCGAGAGCAGAAGAAGAACAGGGAG +
Preference number: 5 (lower is better)
Translates to: KPRTAQRMAMVCPAQ*SRIRVFREQKKNRE
Trigger: CTCCCTGTTCTTCTTCTGCTCTCGAAAAACCCGGATTCGACTCCACTGGGCAGGGCAGACCATGGCCATCCTCTGTGCTGTCCTAGGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 90 bp TCTCCACCTTCTTCCTTGGCAAGTAGGAGCTGGAGATCTGGTGCATaGTCACCAGGGCTGGGTACAATGGTAGTCCCAGGCACAGGTACC +
Preference number: 5 (lower is better)
Translates to: SPPSSLASRSWRSGA*SPGLGTMVVPGTGT
Trigger: GGTACCTGTGCCTGGGACTACCATTGTACCCAGCCCTGGTGATCATGCACCAGATCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp ACTCCCCTTCCTCCCGGGGCTGCGAATAGACATCAGATGGCACAGCCCACGCAAATCTCACTTCGGATCTaGCTGGAAATGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: TPLPPGAANRHQMAQPTQISLRI*LEMMKP
Trigger: GGGCTTCATCATTTCCAGCAAGATCCGAAGTGAGAT...TTGCGTGGGCTGTGCCATCTGATGTCTATTCGCAGCCCCGGGAGGAAGGGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS TCA 90 bp GCACAGGTACCAGGCTGTACCTTTGATCTGGGCCTGGAACCACACTaGGTACATGCCCAAGAGCACCGTTACTGTAGCCATCAGGTAGAC +
Preference number: 5 (lower is better)
Translates to: AQVPGCTFDLGLEPH*VHAQEHRYCSHQVD
Trigger: GTCTACCTGATGGCTACAGTAACGGTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGTACCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp CTGGCACTGAGGACTAATGGCTGTCCAGCTGCTGCCCTAGGATGGAAAGACGGGATCTCACTTCGGATCTaGCTGGAAATGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: LALRTNGCPAAALGWKDGISLRI*LEMMKP
Trigger: GGGCTTCATCATTTCCAGCAAGATCCGAAGTGAGAT...CCCGTCTTTCCATCCTAGGGCAGCAGCTGGACAGCCATTAGTCCTCAGTGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp CGTTCACAGCACACTGGATGGCTTGAGCCGGAGAGAGGGCTTTGGAAAAGCCAATCTCCACCTTCTTCCTaGGCAAGTAGGAGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: RSQHTGWLEPERGLWKSQSPPSS*ASRSWR
Trigger: TCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAGA...TTGGCTTTTCCAAAGCCCTCTCTCCGGCTCAAGCCATCCAGTGTGCTGTGAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065664.7
ENSMUST00000106655.2
CDS CCA 90 bp GCCAACAGTGTCAAGGCTCCTATCCAGCTGTGCCAGGACACCAAATaGGACATCTCACTTCGGATCTTGCTGGAAATGATGAAGCCCAAG +
Preference number: 5 (lower is better)
Translates to: ANSVKAPIQLCQDTK*DISLRILLEMMKPK
Trigger: CTTGGGCTTCATCATTTCCAGCAAGATCCGAAGTGAGATGTCCCATTTGGTGTCCTGGCACAGCTGGATAGGAGCCTTGACACTGTTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACATACCAGGCTGTACCTTaGATCTGGGCCTGGAACCAC +
Preference number: 5 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTYQAVP*IWAWNH
Trigger: GTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGTA...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp ATGAGAGAATTACATCCTGAGCTGCCCACATGGTCCAGAGCTAAGAGGGTATCGTACCAGGCTGTACCTTaGATCTGGGCCTGGAACCAC +
Preference number: 5 (lower is better)
Translates to: MRELHPELPTWSRAKRVSYQAVP*IWAWNH
Trigger: GTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGGTA...CGATACCCTCTTAGCTCTGGACCATGTGGGCAGCTCAGGATGTAATTCTCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp CTTTCCACAGTTCGTGCGTGGCCCTTGTTTCTTGGTTCAGGAACCAAGTTGACATCTCCACCTTCTTCCTaGGCAAGTAGGAGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: LSTVRAWPLFLGSGTKLTSPPSS*ASRSWR
Trigger: TCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAGA...TGTCAACTTGGTTCCTGAACCAAGAAACAAGGGCCACGCACGAACTGTGGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS GCA 90 bp TGGAGTCGAATCCGGGTTTTTCGAGAGCAGAAGAAGAACAGGGAGTaGTCAGGTGAGAAGAGTAGAATAGCTTCAGCCATGCAGAGACAG +
Preference number: 5 (lower is better)
Translates to: WSRIRVFREQKKNRE*SGEKSRIASAMQRQ
Trigger: CTGTCTCTGCATGGCTGAAGCTATTCTACTCTTCTCACCTGAGCACTCCCTGTTCTTCTTCTGCTCTCGAAAAACCCGGATTCGACTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp CACCATTACCACCACCTAATACTTCTGTCTCCCACCAAGAGTGAGGTTTCAGGTTCTCCACCTTCTTCCTaGGCAAGTAGGAGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: HHYHHLILLSPTKSEVSGSPPSS*ASRSWR
Trigger: TCTCCAGCTCCTACTTGCCAAGGAAGAAGGTGGAGA...ACCTGAAACCTCACTCTTGGTGGGAGACAGAAGTATTAGGTGGTGGTAATGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS-3UTR CAA 90 bp GGCTTGGTAAGGCTACTGCCTTCAGTTCCTCTGAAGAACTTTAAAGTGACTTCAATCTCACTTCGGATCTaGCTGGAAATGATGAAGCCC +
Preference number: 5 (lower is better)
Translates to: GLVRLLPSVPLKNFKVTSISLRI*LEMMKP
Trigger: GGGCTTCATCATTTCCAGCAAGATCCGAAGTGAGAT...TGAAGTCACTTTAAAGTTCTTCAGAGGAACTGAAGGCAGTAGCCTTACCAAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS GCA 72 bp GGCTGCTCGTGGACAGAGGAGGCAGAGCCCACACAGTaGCTGTCCTCCAGTGGCCAACAGTGTCAAGGCTCC +
Preference number: 6 (lower is better)
Translates to: GCSWTEEAEPTQ*LSSSGQQCQGS
Trigger: GGAGCCTTGACACTGTTGGCCACTGGAGGACAGGCACTGTGTGGGCTCTGCCTCCTCTGTCCACGAGCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS CCA 72 bp TCTCCGCAGCCAGCGGGTCAGTCTCGGCTCCCTCGCTaGAGCGGGAACCAGACCTACCTCCATGGAATGCAT +
Preference number: 6 (lower is better)
Translates to: SPQPAGQSRLPR*SGNQTYLHGMH
Trigger: ATGCATTCCATGGAGGTAGGTCTGGTTCCCGCTCCAGCGAGGGAGCCGAGACTGACCCGCTGGCTGCGGAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS TCA 72 bp ACACGTCAGATGGTAGAGCTTGAGGCGAGCCACCCTTaGGACCCGGGCTGCTCGTGGACAGAGGAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: TRQMVELEASHP*DPGCSWTEEAE
Trigger: CTCTGCCTCCTCTGTCCACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGACGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 72 bp GGTAGACAACCAGGCCACACGTCAGATGGTAGAGCTTaGGGCGAGCCACCCTTGAGACCCGGGCTGCTCGTG +
Preference number: 6 (lower is better)
Translates to: GRQPGHTSDGRA*GEPPLRPGLLV
Trigger: CACGAGCAGCCCGGGTCTCAAGGGTGGCTCGCCTCAAGCTCTACCATCTGACGTGTGGCCTGGTTGTCTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 72 bp TGGTTCCGGGCCGGGACAGCACAGTCAGAAAGATGGTaGAGCCCAAAGCTATCAGGTGCGCCAAGATCCCAC +
Preference number: 6 (lower is better)
Translates to: WFRAGTAQSERW*SPKLSGAPRSH
Trigger: GTGGGATCTTGGCGCACCTGATAGCTTTGGGCTTCACCATCTTTCTGACTGTGCTGTCCCGGCCCGGAACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106655.2
CDS TCA 72 bp TCTTCCTTGGCAAGTAGGAGCTGGAGATCTGGTGCATaGTCACCAGGGCTGGGTACAATGGTAGTCCCAGGC +
Preference number: 6 (lower is better)
Translates to: SSLASRSWRSGA*SPGLGTMVVPG
Trigger: GCCTGGGACTACCATTGTACCCAGCCCTGGTGATCATGCACCAGATCTCCAGCTCCTACTTGCCAAGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS TCA 72 bp CCAGGCTGTACCTTTGATCTGGGCCTGGAACCACACTaGGTACATGCCCAAGAGCACCGTTACTGTAGCCAT +
Preference number: 6 (lower is better)
Translates to: PGCTFDLGLEPH*VHAQEHRYCSH
Trigger: ATGGCTACAGTAACGGTGCTCTTGGGCATGTACTCAGTGTGGTTCCAGGCCCAGATCAAAGGTACAGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS CAA 90 bp ATCCAGCTGTGCCAGGACACCAAATGGGACATCTCACTTCGGATCTaGCTGGAAATGATGAAGCCCAAGCCTAGGACAGCACAGAGGATG +
Preference number: 6 (lower is better)
Translates to: IQLCQDTKWDISLRI*LEMMKPKPRTAQRM
Trigger: CATCCTCTGTGCTGTCCTAGGCTTGGGCTTCATCATTTCCAGCAAGATCCGAAGTGAGATGTCCCATTTGGTGTCCTGGCACAGCTGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2
CDS CCA 72 bp GTCAAGGCTCCTATCCAGCTGTGCCAGGACACCAAATaGGACATCTCACTTCGGATCTTGCTGGAAATGATG +
Preference number: 6 (lower is better)
Translates to: VKAPIQLCQDTK*DISLRILLEMM
Trigger: CATCATTTCCAGCAAGATCCGAAGTGAGATGTCCCATTTGGTGTCCTGGCACAGCTGGATAGGAGCCTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065664.7
ENSMUST00000106654.2
ENSMUST00000106655.2