Pregenerated sensors for CXCR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045382Ensembl transcript IDs: ENSMUST00000052172.7, ENSMUST00000142893.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTaGGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAA | + |
Preference number: 1 (lower is better) Translates to: GGGVLLGMKRLCSNS*GSRLALFNLPHILE Trigger: TTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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3UTR-3UTR CCA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGCAGCTACTAAGAACTTaGCCACAGGTCCTGCCTAGA | + |
Preference number: 2 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRQLLRT*PQVLPR Trigger: TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTG...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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3UTR-3UTR CCA 90 bp | GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAAAAACTGTACAAGACTaGTCAGTCTCTTATATCTGG | + |
Preference number: 2 (lower is better) Translates to: VLHTDKQLLRTWPQVLPRKTVQD*SVSYIW Trigger: CCAGATATAAGAGACTGACCAGTCTTGTACAGTTTT...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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3UTR TCA 72 bp | GTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTaGGGATCACGGCTAGCTTTATTCAATTTACCACAC | + |
Preference number: 3 (lower is better) Translates to: VLLGMKRLCSNS*GSRLALFNLPH Trigger: GTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGGCCTTGCGCTTCTGGTaGCCCTTGGAGTGTGACAGC | + |
Preference number: 4 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRALRFW*PLECDS Trigger: GCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGC...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR GCA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGGGTACTTGTCCGTCATaGTCCTTAGCTTCTTCTGGT | + |
Preference number: 4 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRGTCPS*SLASSG Trigger: ACCAGAAGAAGCTAAGGAGCATGACGGACAAGTACC...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGGAGTTGAGTGCATGCTaGGCAGAGCTTTTGAACTTG | + |
Preference number: 4 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRELSAC*AELLNL Trigger: CAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTC...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCTACCTGTCATCCCCCTaGCTGATGTCCCCCTGGCTG | + |
Preference number: 4 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFYLSSP*LMSPWL Trigger: CAGCCAGGGGGACATCAGTCAGGGGGATGACAGGTA...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCGCTGGGCAGAGCTTTTaGACTTGGCCCCGAGGAAGG | + |
Preference number: 4 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFAGQSF*TWPRGR Trigger: CCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGC...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCCTCTGCTCATGGAGTTaGGTGCATGCTGGGCAGAGC | + |
Preference number: 4 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFLCSWS*VHAGQS Trigger: GCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAG...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR GCA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCTCAGCCACTGACAGGTaGAGCCGGTACTTGTCCGTC | + |
Preference number: 4 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFSATDR*SRYLSV Trigger: GACGGACAAGTACCGGCTGCACCTGTCAGTGGCTGA...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCAGTCAGGAGGAGGGCTaGGATCCAGACGCCCACATA | + |
Preference number: 4 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFSQEEG*DPDAHI Trigger: TATGTGGGCGTCTGGATCCCAGCCCTCCTCCTGACT...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCGGGTTCAGGCAACAGTaGAAGAAGGCGAGGGCCTCT | + |
Preference number: 4 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFGFRQQ*KKARAS Trigger: AGAGGCCCTCGCCTTCTTCCACTGTTGCCTGAACCC...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGAGGAGGTCAGCCACTaGCAGGTGCAGCCGGTACTT | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMEEVSH*QVQPVL Trigger: AAGTACCGGCTGCACCTGTCAGTGGCTGACCTCCTC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR GCA 90 bp | GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAAGCCATGGCATCAACTaGCCAGAAGGGGAGTGTGAT | + |
Preference number: 4 (lower is better) Translates to: VLHTDKQLLRTWPQVLPRSHGIN*PEGECD Trigger: ATCACACTCCCCTTCTGGGCAGTTGATGCCATGGCT...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGAGGGCCTTGCGCTTCTaGTGGCCCTTGGAGTGTGAC | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMRALRF*WPLECD Trigger: GTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR GCA 90 bp | GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAGACGCCCACATAGACTaGCTTTTCAGCCAGCAGTTT | + |
Preference number: 4 (lower is better) Translates to: VLHTDKQLLRTWPQVLPRDAHID*LFSQQF Trigger: AAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTC...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGCTTTGGAAAGGATCTTaGGGCTGGAGCCTCTGCTCA | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMLWKGS*GWSLCS Trigger: TGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAG...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGAGTACCAGTCAGCCATaGCATCAACTGCCCAGAAGG | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMSTSQP*HQLPRR Trigger: CCTTCTGGGCAGTTGATGCCATGGCTGACTGGTACT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGTGGCCCTTGGAGTGTaGCAGCTTAGAGATGATGAT | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMVALGV*QLRDDD Trigger: ATCATCATCTCTAAGCTGTCACACTCCAAGGGCCAC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR GCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGCTCATGGAGTTGAGTaGATGCTGGGCAGAGCTTTT | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMAHGVE*MLGRAF Trigger: AAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR GCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGGATCACCAATCCATTaGCGACTATGCCAGTCAAGA | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMGSPIH*RLCQSR Trigger: TCTTGACTGGCATAGTCGGCAATGGATTGGTGATCC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGAGCAGGGTTCCTTGTTaGAGTCATAGTCTCCAGAAC | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMSRVPC*SHSLQN Trigger: GTTCTGGAGACTATGACTCCAACAAGGAACCCTGCT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CCA 90 bp | GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAAAGATCCTATTGAAATaGACGTTTTCATCCCGGAAG | + |
Preference number: 4 (lower is better) Translates to: VLHTDKQLLRTWPQVLPRKILLK*TFSSRK Trigger: CTTCCGGGATGAAAACGTCCATTTCAATAGGATCTT...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR TCA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGATTATATGCTGGAATTaGAACACCACCATCCACAGG | + |
Preference number: 4 (lower is better) Translates to: QQLRITASFIQFTTHSGMIICWN*NTTIHR Trigger: CCTGTGGATGGTGGTGTTTCAATTCCAGCATATAAT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGAGGTGCAGCCGGTACTaGTCCGTCATGCTCCTTAGC | + |
Preference number: 5 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRRCSRY*SVMLLS Trigger: GCTAAGGAGCATGACGGACAAGTACCGGCTGCACCT...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGAGGATGACTGTCGTCTaGAGGGCCTTGCGCTTCTGG | + |
Preference number: 5 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRRMTVV*RALRFW Trigger: CCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCT...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGCCACCCCGCTTTCCTTaGGAAAGGATCTTGAGGCTG | + |
Preference number: 5 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRPPRFP*ERILRL Trigger: CAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGG...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CCA 90 bp | GATCCAGACGCCCACATAGACTGCCTTTTCAGCCAGCAGTTTCCTTaGCCTCTGACTGTTGGTGGCGTGGACAATAGCGAGGTACCGGTC | + |
Preference number: 5 (lower is better) Translates to: DPDAHIDCLFSQQFP*PLTVGGVDNSEVPV Trigger: GACCGGTACCTCGCTATTGTCCACGCCACCAACAGTCAGAGGCCAAGGAAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTCTGGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS-3UTR CAA 90 bp | GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGCTCGAAGTCACATCCTaGCTTGATGACCCCCAAAAG | + |
Preference number: 5 (lower is better) Translates to: GWGWGAPRNEEIMQQQLRLEVTS*LDDPQK Trigger: CTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAG...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CCA 90 bp | GCTGACGTCGGCAAAGATGAAGTCAGGTATAGTCAGGAGGAGGGCTaGGATCCAGACGCCCACATAGACTGCCTTTTCAGCCAGCAGTTT | + |
Preference number: 5 (lower is better) Translates to: ADVGKDEVRYSQEEG*DPDAHIDCLFSQQF Trigger: AAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTCTGGATCCCAGCCCTCCTCCTGACTATACCTGACTTCATCTTTGCCGACGTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS TCA 90 bp | GACTGTCGTCTTGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGTaGCAGCTTAGAGATGATGATGCAGTAACAGGAGAGGATGACGAT | + |
Preference number: 5 (lower is better) Translates to: DCRLEGLALLVALGV*QLRDDDAVTGEDDD Trigger: ATCGTCATCCTCTCCTGTTACTGCATCATCATCTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS GCA 90 bp | CAACAGTGGAAGAAGGCGAGGGCCTCTGTGATGGAGATCCACTTGTaGACGATGCTCTCGAAGTCACATCCTTGCTTGATGACCCCCAAA | + |
Preference number: 5 (lower is better) Translates to: QQWKKARASVMEIHL*TMLSKSHPCLMTPK Trigger: TTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACAGAGGCCCTCGCCTTCTTCCACTGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS GCA 90 bp | TTTGGAAAGGATCTTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTaGATGCTGGGCAGAGCTTTTGAACTTGGCCCCGAGGAAGGCATA | + |
Preference number: 5 (lower is better) Translates to: FGKDLEAGASAHGVE*MLGRAFELGPEEGI Trigger: TATGCCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS GCA 90 bp | GTGATGGAGATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTTaGTTGATGACCCCCAAAAGGATGAAGGAGTCGATGCTGATCCCC | + |
Preference number: 5 (lower is better) Translates to: VMEIHLCTMLSKSHP*LMTPKRMKESMLIP Trigger: GGGGATCAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACCTCTGCTCATGGAGTaGAGTGCATGCTGGGCAGAG | + |
Preference number: 5 (lower is better) Translates to: VLHTDKQLLRTWPQVLPRPLLME*SACWAE Trigger: CTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGG...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS TCA 90 bp | GCCGGTACTTGTCCGTCATGCTCCTTAGCTTCTTCTGGTAACCCATaGCCAGGATCACCAATCCATTGCCGACTATGCCAGTCAAGAAGA | + |
Preference number: 5 (lower is better) Translates to: AGTCPSCSLASSGNP*PGSPIHCRLCQSRR Trigger: TCTTCTTGACTGGCATAGTCGGCAATGGATTGGTGATCCTGGTCATGGGTTACCAGAAGAAGCTAAGGAGCATGACGGACAAGTACCGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS-3UTR CAA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCCGCTTCTGGTGGCCCTaGGAGTGTGACAGCTTAGAG | + |
Preference number: 5 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFRFWWP*ECDSLE Trigger: CTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCG...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGTCGTCTTGAGGGCCTaGCGCTTCTGGTGGCCCTTG | + |
Preference number: 5 (lower is better) Translates to: QQLRITASFIQFTTHSGMVVLRA*RFWWPL Trigger: CAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGAC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCTGCTGGGCAGAGCTTTaGAACTTGGCCCCGAGGAAG | + |
Preference number: 5 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFCWAEL*NLAPRK Trigger: CTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCA...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCCCTTTGGAAAGGATCTaGAGGCTGGAGCCTCTGCTC | + |
Preference number: 5 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFPLERI*RLEPLL Trigger: GAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGG...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCGGCAGGAAGATCCTATaGAAATGGACGTTTTCATCC | + |
Preference number: 5 (lower is better) Translates to: TDKQLLRTWPQVLPRHSFGRKIL*KWTFSS Trigger: GGATGAAAACGTCCATTTCAATAGGATCTTCCTGCC...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS-3UTR CAA 90 bp | CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGCATTATATGCTGGAATaGAAACACCACCATCCACAG | + |
Preference number: 5 (lower is better) Translates to: QQLRITASFIQFTTHSGMHYMLE*KHHHPQ Trigger: CTGTGGATGGTGGTGTTTCAATTCCAGCATATAATG...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CCA 72 bp | AGGCTGGAGCCTCTGCTCATGGAGTTGAGTGCATGCTaGGCAGAGCTTTTGAACTTGGCCCCGAGGAAGGCA | + |
Preference number: 6 (lower is better) Translates to: RLEPLLMELSAC*AELLNLAPRKA Trigger: TGCCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CAA 90 bp | GGCAGCCAGCAGGCAAAGAAAGCTAGGATGAGGATGACTGTCGTCTaGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGTGACAGCTTA | + |
Preference number: 6 (lower is better) Translates to: GSQQAKKARMRMTVV*RALRFWWPLECDSL Trigger: TAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCTCATCCTAGCTTTCTTTGCCTGCTGGCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS CAA 90 bp | GTGGAGACGGAAGAGTGTCCACCCCGCTTTCCTTTGGAAAGGATCTaGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTGCATGCTGGGCA | + |
Preference number: 6 (lower is better) Translates to: VETEECPPRFPLERI*RLEPLLMELSACWA Trigger: TGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGGACACTCTTCCGTCTCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS GCA 72 bp | TTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTGCATaGTGGGCAGAGCTTTTGAACTTGGCCCCGAGGAAG | + |
Preference number: 6 (lower is better) Translates to: LRLEPLLMELSA*WAELLNLAPRK Trigger: CTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS GCA 72 bp | GATCTTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTaGATGCTGGGCAGAGCTTTTGAACTTGGCCCCGAG | + |
Preference number: 6 (lower is better) Translates to: DLEAGASAHGVE*MLGRAFELGPE Trigger: CTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CCA 72 bp | GCCCACATAGACTGCCTTTTCAGCCAGCAGTTTCCTTaGCCTCTGACTGTTGGTGGCGTGGACAATAGCGAG | + |
Preference number: 6 (lower is better) Translates to: AHIDCLFSQQFP*PLTVGGVDNSE Trigger: CTCGCTATTGTCCACGCCACCAACAGTCAGAGGCCAAGGAAACTGCTGGCTGAAAAGGCAGTCTATGTGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS CAA 72 bp | CAGGCAAAGAAAGCTAGGATGAGGATGACTGTCGTCTaGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGT | + |
Preference number: 6 (lower is better) Translates to: QAKKARMRMTVV*RALRFWWPLEC Trigger: ACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCTCATCCTAGCTTTCTTTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS CAA 90 bp | GATTCTGACTCCGTGGAGACGGAAGAGTGTCCACCCCGCTTTCCTTaGGAAAGGATCTTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGT | + |
Preference number: 6 (lower is better) Translates to: DSDSVETEECPPRFP*ERILRLEPLLMELS Trigger: ACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGGACACTCTTCCGTCTCCACGGAGTCAGAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS TCA 72 bp | CTTGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGTaGCAGCTTAGAGATGATGATGCAGTAACAGGAGAG | + |
Preference number: 6 (lower is better) Translates to: LEGLALLVALGV*QLRDDDAVTGE Trigger: CTCTCCTGTTACTGCATCATCATCTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS GCA 72 bp | AGTGTGATGACAAAGAGGAGGTCAGCCACTGACAGGTaGAGCCGGTACTTGTCCGTCATGCTCCTTAGCTTC | + |
Preference number: 6 (lower is better) Translates to: SVMTKRRSATDR*SRYLSVMLLSF Trigger: GAAGCTAAGGAGCATGACGGACAAGTACCGGCTGCACCTGTCAGTGGCTGACCTCCTCTTTGTCATCACACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS CCA 72 bp | AGGATGACTGTCGTCTTGAGGGCCTTGCGCTTCTGGTaGCCCTTGGAGTGTGACAGCTTAGAGATGATGATG | + |
Preference number: 6 (lower is better) Translates to: RMTVVLRALRFW*PLECDSLEMMM Trigger: CATCATCATCTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS CAA 90 bp | TTTCCTTTGGAAAGGATCTTGAGGCTGGAGCCTCTGCTCATGGAGTaGAGTGCATGCTGGGCAGAGCTTTTGAACTTGGCCCCGAGGAAG | + |
Preference number: 6 (lower is better) Translates to: FPLERILRLEPLLME*SACWAELLNLAPRK Trigger: CTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS GCA 72 bp | AAGAAGGCGAGGGCCTCTGTGATGGAGATCCACTTGTaGACGATGCTCTCGAAGTCACATCCTTGCTTGATG | + |
Preference number: 6 (lower is better) Translates to: KKARASVMEIHL*TMLSKSHPCLM Trigger: CATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACAGAGGCCCTCGCCTTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CAA 90 bp | TGTGATGGAGATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTaGCTTGATGACCCCCAAAAGGATGAAGGAGTCGATGCTGATCCC | + |
Preference number: 6 (lower is better) Translates to: CDGDPLVHDALEVTS*LDDPQKDEGVDADP Trigger: GGGATCAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS TCA 72 bp | TGTCCGTCATGCTCCTTAGCTTCTTCTGGTAACCCATaGCCAGGATCACCAATCCATTGCCGACTATGCCAG | + |
Preference number: 6 (lower is better) Translates to: CPSCSLASSGNP*PGSPIHCRLCQ Trigger: CTGGCATAGTCGGCAATGGATTGGTGATCCTGGTCATGGGTTACCAGAAGAAGCTAAGGAGCATGACGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |
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CDS CAA 72 bp | CACTTGTGCACGATGCTCTCGAAGTCACATCCTTGCTaGATGACCCCCAAAAGGATGAAGGAGTCGATGCTG | + |
Preference number: 6 (lower is better) Translates to: HLCTMLSKSHPC*MTPKRMKESML Trigger: CAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS GCA 72 bp | ATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTTaGTTGATGACCCCCAAAAGGATGAAGGAGTCGATG | + |
Preference number: 6 (lower is better) Translates to: IHLCTMLSKSHP*LMTPKRMKESM Trigger: CATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CAA 72 bp | GATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTaGCTTGATGACCCCCAAAAGGATGAAGGAGTCGAT | + |
Preference number: 6 (lower is better) Translates to: DPLVHDALEVTS*LDDPQKDEGVD Trigger: ATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052172.7 |
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CDS CCA 72 bp | AATGGACGTTTTCATCCCGGAAGCAGGGTTCCTTGTTaGAGTCATAGTCTCCAGAACCCACTTCTTCAGAGT | + |
Preference number: 6 (lower is better) Translates to: NGRFHPGSRVPC*SHSLQNPLLQS Trigger: ACTCTGAAGAAGTGGGTTCTGGAGACTATGACTCCAACAAGGAACCCTGCTTCCGGGATGAAAACGTCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052172.7 ENSMUST00000142893.2 |