RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CXCR4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045382

Ensembl transcript IDs: ENSMUST00000052172.7, ENSMUST00000142893.2

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTaGGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAA +
Preference number: 1 (lower is better)
Translates to: GGGVLLGMKRLCSNS*GSRLALFNLPHILE
Trigger: TTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
3UTR-3UTR CCA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGCAGCTACTAAGAACTTaGCCACAGGTCCTGCCTAGA +
Preference number: 2 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRQLLRT*PQVLPR
Trigger: TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTG...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
3UTR-3UTR CCA 90 bp GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAAAAACTGTACAAGACTaGTCAGTCTCTTATATCTGG +
Preference number: 2 (lower is better)
Translates to: VLHTDKQLLRTWPQVLPRKTVQD*SVSYIW
Trigger: CCAGATATAAGAGACTGACCAGTCTTGTACAGTTTT...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
3UTR TCA 72 bp GTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTaGGGATCACGGCTAGCTTTATTCAATTTACCACAC +
Preference number: 3 (lower is better)
Translates to: VLLGMKRLCSNS*GSRLALFNLPH
Trigger: GTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGGCCTTGCGCTTCTGGTaGCCCTTGGAGTGTGACAGC +
Preference number: 4 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRALRFW*PLECDS
Trigger: GCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGC...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR GCA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGGGTACTTGTCCGTCATaGTCCTTAGCTTCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRGTCPS*SLASSG
Trigger: ACCAGAAGAAGCTAAGGAGCATGACGGACAAGTACC...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGGAGTTGAGTGCATGCTaGGCAGAGCTTTTGAACTTG +
Preference number: 4 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRELSAC*AELLNL
Trigger: CAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTC...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCTACCTGTCATCCCCCTaGCTGATGTCCCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFYLSSP*LMSPWL
Trigger: CAGCCAGGGGGACATCAGTCAGGGGGATGACAGGTA...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCGCTGGGCAGAGCTTTTaGACTTGGCCCCGAGGAAGG +
Preference number: 4 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFAGQSF*TWPRGR
Trigger: CCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGC...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCCTCTGCTCATGGAGTTaGGTGCATGCTGGGCAGAGC +
Preference number: 4 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFLCSWS*VHAGQS
Trigger: GCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAG...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR GCA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCTCAGCCACTGACAGGTaGAGCCGGTACTTGTCCGTC +
Preference number: 4 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFSATDR*SRYLSV
Trigger: GACGGACAAGTACCGGCTGCACCTGTCAGTGGCTGA...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCAGTCAGGAGGAGGGCTaGGATCCAGACGCCCACATA +
Preference number: 4 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFSQEEG*DPDAHI
Trigger: TATGTGGGCGTCTGGATCCCAGCCCTCCTCCTGACT...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCGGGTTCAGGCAACAGTaGAAGAAGGCGAGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFGFRQQ*KKARAS
Trigger: AGAGGCCCTCGCCTTCTTCCACTGTTGCCTGAACCC...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGAGGAGGTCAGCCACTaGCAGGTGCAGCCGGTACTT +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMEEVSH*QVQPVL
Trigger: AAGTACCGGCTGCACCTGTCAGTGGCTGACCTCCTC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR GCA 90 bp GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAAGCCATGGCATCAACTaGCCAGAAGGGGAGTGTGAT +
Preference number: 4 (lower is better)
Translates to: VLHTDKQLLRTWPQVLPRSHGIN*PEGECD
Trigger: ATCACACTCCCCTTCTGGGCAGTTGATGCCATGGCT...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGAGGGCCTTGCGCTTCTaGTGGCCCTTGGAGTGTGAC +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMRALRF*WPLECD
Trigger: GTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR GCA 90 bp GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAGACGCCCACATAGACTaGCTTTTCAGCCAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: VLHTDKQLLRTWPQVLPRDAHID*LFSQQF
Trigger: AAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTC...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGCTTTGGAAAGGATCTTaGGGCTGGAGCCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMLWKGS*GWSLCS
Trigger: TGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAG...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGAGTACCAGTCAGCCATaGCATCAACTGCCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMSTSQP*HQLPRR
Trigger: CCTTCTGGGCAGTTGATGCCATGGCTGACTGGTACT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGTGGCCCTTGGAGTGTaGCAGCTTAGAGATGATGAT +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMVALGV*QLRDDD
Trigger: ATCATCATCTCTAAGCTGTCACACTCCAAGGGCCAC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR GCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGCTCATGGAGTTGAGTaGATGCTGGGCAGAGCTTTT +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMAHGVE*MLGRAF
Trigger: AAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR GCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGGATCACCAATCCATTaGCGACTATGCCAGTCAAGA +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMGSPIH*RLCQSR
Trigger: TCTTGACTGGCATAGTCGGCAATGGATTGGTGATCC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGAGCAGGGTTCCTTGTTaGAGTCATAGTCTCCAGAAC +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMSRVPC*SHSLQN
Trigger: GTTCTGGAGACTATGACTCCAACAAGGAACCCTGCT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CCA 90 bp GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGAAAGATCCTATTGAAATaGACGTTTTCATCCCGGAAG +
Preference number: 4 (lower is better)
Translates to: VLHTDKQLLRTWPQVLPRKILLK*TFSSRK
Trigger: CTTCCGGGATGAAAACGTCCATTTCAATAGGATCTT...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR TCA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGATTATATGCTGGAATTaGAACACCACCATCCACAGG +
Preference number: 4 (lower is better)
Translates to: QQLRITASFIQFTTHSGMIICWN*NTTIHR
Trigger: CCTGTGGATGGTGGTGTTTCAATTCCAGCATATAAT...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGAGGTGCAGCCGGTACTaGTCCGTCATGCTCCTTAGC +
Preference number: 5 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRRCSRY*SVMLLS
Trigger: GCTAAGGAGCATGACGGACAAGTACCGGCTGCACCT...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGAGGATGACTGTCGTCTaGAGGGCCTTGCGCTTCTGG +
Preference number: 5 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRRMTVV*RALRFW
Trigger: CCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCT...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGCCACCCCGCTTTCCTTaGGAAAGGATCTTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRPPRFP*ERILRL
Trigger: CAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGG...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CCA 90 bp GATCCAGACGCCCACATAGACTGCCTTTTCAGCCAGCAGTTTCCTTaGCCTCTGACTGTTGGTGGCGTGGACAATAGCGAGGTACCGGTC +
Preference number: 5 (lower is better)
Translates to: DPDAHIDCLFSQQFP*PLTVGGVDNSEVPV
Trigger: GACCGGTACCTCGCTATTGTCCACGCCACCAACAGTCAGAGGCCAAGGAAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTCTGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS-3UTR CAA 90 bp GGGTGGGGGTGGGGTGCTCCTCGGAATGAAGAGATTATGCAGCAACAGCTGAGGCTCGAAGTCACATCCTaGCTTGATGACCCCCAAAAG +
Preference number: 5 (lower is better)
Translates to: GWGWGAPRNEEIMQQQLRLEVTS*LDDPQK
Trigger: CTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAG...CCTCAGCTGTTGCTGCATAATCTCTTCATTCCGAGGAGCACCCCACCCCCACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CCA 90 bp GCTGACGTCGGCAAAGATGAAGTCAGGTATAGTCAGGAGGAGGGCTaGGATCCAGACGCCCACATAGACTGCCTTTTCAGCCAGCAGTTT +
Preference number: 5 (lower is better)
Translates to: ADVGKDEVRYSQEEG*DPDAHIDCLFSQQF
Trigger: AAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTCTGGATCCCAGCCCTCCTCCTGACTATACCTGACTTCATCTTTGCCGACGTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS TCA 90 bp GACTGTCGTCTTGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGTaGCAGCTTAGAGATGATGATGCAGTAACAGGAGAGGATGACGAT +
Preference number: 5 (lower is better)
Translates to: DCRLEGLALLVALGV*QLRDDDAVTGEDDD
Trigger: ATCGTCATCCTCTCCTGTTACTGCATCATCATCTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS GCA 90 bp CAACAGTGGAAGAAGGCGAGGGCCTCTGTGATGGAGATCCACTTGTaGACGATGCTCTCGAAGTCACATCCTTGCTTGATGACCCCCAAA +
Preference number: 5 (lower is better)
Translates to: QQWKKARASVMEIHL*TMLSKSHPCLMTPK
Trigger: TTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACAGAGGCCCTCGCCTTCTTCCACTGTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS GCA 90 bp TTTGGAAAGGATCTTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTaGATGCTGGGCAGAGCTTTTGAACTTGGCCCCGAGGAAGGCATA +
Preference number: 5 (lower is better)
Translates to: FGKDLEAGASAHGVE*MLGRAFELGPEEGI
Trigger: TATGCCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS GCA 90 bp GTGATGGAGATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTTaGTTGATGACCCCCAAAAGGATGAAGGAGTCGATGCTGATCCCC +
Preference number: 5 (lower is better)
Translates to: VMEIHLCTMLSKSHP*LMTPKRMKESMLIP
Trigger: GGGGATCAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp GTCCTACACACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACCTCTGCTCATGGAGTaGAGTGCATGCTGGGCAGAG +
Preference number: 5 (lower is better)
Translates to: VLHTDKQLLRTWPQVLPRPLLME*SACWAE
Trigger: CTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGG...TCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGTGTGTAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS TCA 90 bp GCCGGTACTTGTCCGTCATGCTCCTTAGCTTCTTCTGGTAACCCATaGCCAGGATCACCAATCCATTGCCGACTATGCCAGTCAAGAAGA +
Preference number: 5 (lower is better)
Translates to: AGTCPSCSLASSGNP*PGSPIHCRLCQSRR
Trigger: TCTTCTTGACTGGCATAGTCGGCAATGGATTGGTGATCCTGGTCATGGGTTACCAGAAGAAGCTAAGGAGCATGACGGACAAGTACCGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS-3UTR CAA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCCGCTTCTGGTGGCCCTaGGAGTGTGACAGCTTAGAG +
Preference number: 5 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFRFWWP*ECDSLE
Trigger: CTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCG...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGGTCGTCTTGAGGGCCTaGCGCTTCTGGTGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: QQLRITASFIQFTTHSGMVVLRA*RFWWPL
Trigger: CAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGAC...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCTGCTGGGCAGAGCTTTaGAACTTGGCCCCGAGGAAG +
Preference number: 5 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFCWAEL*NLAPRK
Trigger: CTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCA...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCCCTTTGGAAAGGATCTaGAGGCTGGAGCCTCTGCTC +
Preference number: 5 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFPLERI*RLEPLL
Trigger: GAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGG...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp ACAGATAAACAGCTACTAAGAACTTGGCCACAGGTCCTGCCTAGACACTCATTCGGCAGGAAGATCCTATaGAAATGGACGTTTTCATCC +
Preference number: 5 (lower is better)
Translates to: TDKQLLRTWPQVLPRHSFGRKIL*KWTFSS
Trigger: GGATGAAAACGTCCATTTCAATAGGATCTTCCTGCC...GAATGAGTGTCTAGGCAGGACCTGTGGCCAAGTTCTTAGTAGCTGTTTATCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS-3UTR CAA 90 bp CAACAGCTGAGGATCACGGCTAGCTTTATTCAATTTACCACACATTCTGGAATGCATTATATGCTGGAATaGAAACACCACCATCCACAG +
Preference number: 5 (lower is better)
Translates to: QQLRITASFIQFTTHSGMHYMLE*KHHHPQ
Trigger: CTGTGGATGGTGGTGTTTCAATTCCAGCATATAATG...CATTCCAGAATGTGTGGTAAATTGAATAAAGCTAGCCGTGATCCTCAGCTGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CCA 72 bp AGGCTGGAGCCTCTGCTCATGGAGTTGAGTGCATGCTaGGCAGAGCTTTTGAACTTGGCCCCGAGGAAGGCA +
Preference number: 6 (lower is better)
Translates to: RLEPLLMELSAC*AELLNLAPRKA
Trigger: TGCCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CAA 90 bp GGCAGCCAGCAGGCAAAGAAAGCTAGGATGAGGATGACTGTCGTCTaGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGTGACAGCTTA +
Preference number: 6 (lower is better)
Translates to: GSQQAKKARMRMTVV*RALRFWWPLECDSL
Trigger: TAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCTCATCCTAGCTTTCTTTGCCTGCTGGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS CAA 90 bp GTGGAGACGGAAGAGTGTCCACCCCGCTTTCCTTTGGAAAGGATCTaGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTGCATGCTGGGCA +
Preference number: 6 (lower is better)
Translates to: VETEECPPRFPLERI*RLEPLLMELSACWA
Trigger: TGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGGACACTCTTCCGTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS GCA 72 bp TTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTGCATaGTGGGCAGAGCTTTTGAACTTGGCCCCGAGGAAG +
Preference number: 6 (lower is better)
Translates to: LRLEPLLMELSA*WAELLNLAPRK
Trigger: CTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS GCA 72 bp GATCTTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGTaGATGCTGGGCAGAGCTTTTGAACTTGGCCCCGAG +
Preference number: 6 (lower is better)
Translates to: DLEAGASAHGVE*MLGRAFELGPE
Trigger: CTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CCA 72 bp GCCCACATAGACTGCCTTTTCAGCCAGCAGTTTCCTTaGCCTCTGACTGTTGGTGGCGTGGACAATAGCGAG +
Preference number: 6 (lower is better)
Translates to: AHIDCLFSQQFP*PLTVGGVDNSE
Trigger: CTCGCTATTGTCCACGCCACCAACAGTCAGAGGCCAAGGAAACTGCTGGCTGAAAAGGCAGTCTATGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS CAA 72 bp CAGGCAAAGAAAGCTAGGATGAGGATGACTGTCGTCTaGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGT +
Preference number: 6 (lower is better)
Translates to: QAKKARMRMTVV*RALRFWWPLEC
Trigger: ACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCTCATCCTAGCTTTCTTTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS CAA 90 bp GATTCTGACTCCGTGGAGACGGAAGAGTGTCCACCCCGCTTTCCTTaGGAAAGGATCTTGAGGCTGGAGCCTCTGCTCATGGAGTTGAGT +
Preference number: 6 (lower is better)
Translates to: DSDSVETEECPPRFP*ERILRLEPLLMELS
Trigger: ACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGGACACTCTTCCGTCTCCACGGAGTCAGAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS TCA 72 bp CTTGAGGGCCTTGCGCTTCTGGTGGCCCTTGGAGTGTaGCAGCTTAGAGATGATGATGCAGTAACAGGAGAG +
Preference number: 6 (lower is better)
Translates to: LEGLALLVALGV*QLRDDDAVTGE
Trigger: CTCTCCTGTTACTGCATCATCATCTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS GCA 72 bp AGTGTGATGACAAAGAGGAGGTCAGCCACTGACAGGTaGAGCCGGTACTTGTCCGTCATGCTCCTTAGCTTC +
Preference number: 6 (lower is better)
Translates to: SVMTKRRSATDR*SRYLSVMLLSF
Trigger: GAAGCTAAGGAGCATGACGGACAAGTACCGGCTGCACCTGTCAGTGGCTGACCTCCTCTTTGTCATCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS CCA 72 bp AGGATGACTGTCGTCTTGAGGGCCTTGCGCTTCTGGTaGCCCTTGGAGTGTGACAGCTTAGAGATGATGATG +
Preference number: 6 (lower is better)
Translates to: RMTVVLRALRFW*PLECDSLEMMM
Trigger: CATCATCATCTCTAAGCTGTCACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS CAA 90 bp TTTCCTTTGGAAAGGATCTTGAGGCTGGAGCCTCTGCTCATGGAGTaGAGTGCATGCTGGGCAGAGCTTTTGAACTTGGCCCCGAGGAAG +
Preference number: 6 (lower is better)
Translates to: FPLERILRLEPLLME*SACWAELLNLAPRK
Trigger: CTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCATGAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS GCA 72 bp AAGAAGGCGAGGGCCTCTGTGATGGAGATCCACTTGTaGACGATGCTCTCGAAGTCACATCCTTGCTTGATG +
Preference number: 6 (lower is better)
Translates to: KKARASVMEIHL*TMLSKSHPCLM
Trigger: CATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACAGAGGCCCTCGCCTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CAA 90 bp TGTGATGGAGATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTaGCTTGATGACCCCCAAAAGGATGAAGGAGTCGATGCTGATCCC +
Preference number: 6 (lower is better)
Translates to: CDGDPLVHDALEVTS*LDDPQKDEGVDADP
Trigger: GGGATCAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS TCA 72 bp TGTCCGTCATGCTCCTTAGCTTCTTCTGGTAACCCATaGCCAGGATCACCAATCCATTGCCGACTATGCCAG +
Preference number: 6 (lower is better)
Translates to: CPSCSLASSGNP*PGSPIHCRLCQ
Trigger: CTGGCATAGTCGGCAATGGATTGGTGATCCTGGTCATGGGTTACCAGAAGAAGCTAAGGAGCATGACGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2
CDS CAA 72 bp CACTTGTGCACGATGCTCTCGAAGTCACATCCTTGCTaGATGACCCCCAAAAGGATGAAGGAGTCGATGCTG +
Preference number: 6 (lower is better)
Translates to: HLCTMLSKSHPC*MTPKRMKESML
Trigger: CAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS GCA 72 bp ATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTTaGTTGATGACCCCCAAAAGGATGAAGGAGTCGATG +
Preference number: 6 (lower is better)
Translates to: IHLCTMLSKSHP*LMTPKRMKESM
Trigger: CATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CAA 72 bp GATCCACTTGTGCACGATGCTCTCGAAGTCACATCCTaGCTTGATGACCCCCAAAAGGATGAAGGAGTCGAT +
Preference number: 6 (lower is better)
Translates to: DPLVHDALEVTS*LDDPQKDEGVD
Trigger: ATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGATGTGACTTCGAGAGCATCGTGCACAAGTGGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052172.7
CDS CCA 72 bp AATGGACGTTTTCATCCCGGAAGCAGGGTTCCTTGTTaGAGTCATAGTCTCCAGAACCCACTTCTTCAGAGT +
Preference number: 6 (lower is better)
Translates to: NGRFHPGSRVPC*SHSLQNPLLQS
Trigger: ACTCTGAAGAAGTGGGTTCTGGAGACTATGACTCCAACAAGGAACCCTGCTTCCGGGATGAAAACGTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052172.7
ENSMUST00000142893.2