RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CXCR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050232

Ensembl transcript IDs: ENSMUST00000056614.7

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATACTGAGATGGGCACATTCAGTGCTGACAACGCCTGGCCCTCTGTaGTATTTGCCTCTCCCTCTTCTCACACAGGGATGGCTGAGTTCT +
Preference number: 1 (lower is better)
Translates to: ILRWAHSVLTTPGPL*YLPLPLLTQGWLSS
Trigger: AGAACTCAGCCATCCCTGTGTGAGAAGAGGGAGAGGCAAATAGCACAGAGGGCCAGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
3UTR CCA 90 bp CGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGCAAGATAGGGCATaGCAGCTAAGGCACAGTAATGGTGTTGTCCTTGTTGCTGAGATT +
Preference number: 1 (lower is better)
Translates to: RWGSRQLVLKQQDRA*QLRHSNGVVLVAEI
Trigger: AATCTCAGCAACAAGGACAACACCATTACTGTGCCTTAGCTGCCATGCCCTATCTTGCTGTTTTAGAACTAGCTGCCTGGAGCCCCACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
3UTR CAA 90 bp AGATGGGCACATTCAGTGCTGACAACGCCTGGCCCTCTGTGCTATTaGCCTCTCCCTCTTCTCACACAGGGATGGCTGAGTTCTACTTGC +
Preference number: 2 (lower is better)
Translates to: RWAHSVLTTPGPLCY*PLPLLTQGWLSSTC
Trigger: GCAAGTAGAACTCAGCCATCCCTGTGTGAGAAGAGGGAGAGGCAAATAGCACAGAGGGCCAGGCGTTGTCAGCACTGAATGTGCCCATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
3UTR CCA 72 bp GATACTGAGATGGGCACATTCAGTGCTGACAACGCCTaGCCCTCTGTGCTATTTGCCTCTCCCTCTTCTCAC +
Preference number: 3 (lower is better)
Translates to: DTEMGTFSADNA*PSVLFASPSSH
Trigger: GTGAGAAGAGGGAGAGGCAAATAGCACAGAGGGCCAGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
3UTR-3UTR CAA 90 bp AATTGGGCAAATATTGAGATACTGAGATGGGCACATTCAGTGCTGACAACGCCTAAGGAGGACAAGCACTaGGAGTGTGTTAGGACTTGG +
Preference number: 3 (lower is better)
Translates to: NWANIEILRWAHSVLTTPKEDKH*ECVRTW
Trigger: CCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTT...AGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATCTCAATATTTGCCCAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp CCCAACTACAAGGAGGACAAGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGCAGCCACCGCCCCATTaGCTAGCAGCCCCAGCAAGA +
Preference number: 4 (lower is better)
Translates to: PNYKEDKHLECVRTWAAQQPPPH*LAAPAR
Trigger: TCTTGCTGGGGCTGCTAGGCAATGGGGCGGTGGCTG...CTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTTGTAGTTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp GGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGCAAGATAGGGCATGGCAGGGATTGAGGCAGCAGTaGATGTACCCCATGCCCGAG +
Preference number: 4 (lower is better)
Translates to: GRWGSRQLVLKQQDRAWQGLRQQ*MYPMPE
Trigger: CTCGGGCATGGGGTACATGCACTGCTGCCTCAATCC...CTGCCATGCCCTATCTTGCTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp ACAAGGAGGACAAGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGGCTACAGACCCCATGCCCGAGGTaGCTGACTTGGCCACATCCA +
Preference number: 4 (lower is better)
Translates to: TRRTSTWSVLGLGLRRLQTPCPR*LTWPHP
Trigger: TGGATGTGGCCAAGTCAGTCACCTCGGGCATGGGGT...CTGTAGCCTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp ACTGAGATGGGCACATTCAGTGCTGACAACGCCTGGCCCTCTGTGCTATTTGCCTCGGCTACAGCCAGGTaGAGCAGGAAGGTGTCCGTG +
Preference number: 4 (lower is better)
Translates to: TEMGTFSADNAWPSVLFASATAR*SRKVSV
Trigger: CACGGACACCTTCCTGCTCCACCTGGCTGTAGCCGA...GGCAAATAGCACAGAGGGCCAGGCGTTGTCAGCACTGAATGTGCCCATCTCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp CCCAACTACAAGGAGGACAAGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGCATAGCAGTAGGCCATaGCCAGAAGGGGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PNYKEDKHLECVRTWAAQHSSRP*PEGAAG
Trigger: TCCTGCTGCCCCTTCTGGTCATGGCCTACTGCTATG...CTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTTGTAGTTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp GCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGCAAGATCTCAGGGCAGTGCGCTaGCTCAGTAGCACAGCAGCC +
Preference number: 4 (lower is better)
Translates to: ANLVGRWGSRQLVLKQQDLRAVR*LSSTAA
Trigger: GGCTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAG...ATCTTGCTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp GAGATTGATTCTCAGGAGACCTGGATATATGCTGAGCTGTCAGTGCATCCTGGCGCAGGAAGGTGTCCGTaGTGCTCAGGGCAGTGCGCT +
Preference number: 4 (lower is better)
Translates to: EIDSQETWIYAELSVHPGAGRCP*CSGQCA
Trigger: AGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGC...GCCAGGATGCACTGACAGCTCAGCATATATCCAGGTCTCCTGAGAATCAATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp GGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGCAAGATAGGGCATGGCAGTCCACATTTGCTCTCTaGACTTCACTCCCACAAAGG +
Preference number: 4 (lower is better)
Translates to: GRWGSRQLVLKQQDRAWQSTFAL*TSLPQR
Trigger: CCTTTGTGGGAGTGAAGTTCAGAGAGCAAATGTGGA...CTGCCATGCCCTATCTTGCTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp CCCAACTACAAGGAGGACAAGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGGAGGCTGTAGAGGGCTaGCAGGAAGGTTCTGTCAAA +
Preference number: 4 (lower is better)
Translates to: PNYKEDKHLECVRTWAAQEAVEG*QEGSVK
Trigger: TTTGACAGAACCTTCCTGCCAGCCCTCTACAGCCTC...CTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTTGTAGTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp CTACTTGCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGGTTGAACAAGGCGCCTaGCACTTTGCAGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: LLANLVGRWGSRQLVLKQVEQGA*HFAEAR
Trigger: CCTGGCCTCTGCAAAGTGGCAGGCGCCTTGTTCAAC...CTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGCAAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp AGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGGCTACAGTTCCAGTCCAGATGTGGGAAGTTGTACTaGCAATGGGTGGCATTGAGG +
Preference number: 4 (lower is better)
Translates to: STWSVLGLGLRRLQFQSRCGKLY*QWVALR
Trigger: CCTCAATGCCACCCATTGCCAGTACAACTTCCCACA...TCTGGACTGGAACTGTAGCCTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp CTACTTGCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGTGTCAAAGTTCAGGCTaGAATCCTGTGGGCAGGGCG +
Preference number: 4 (lower is better)
Translates to: LLANLVGRWGSRQLVLKQCQSSG*NPVGRA
Trigger: CGCCCTGCCCACAGGATTTCAGCCTGAACTTTGACA...CTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGCAAGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp CTACTTGCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGATACAACTATGCAGGTaGGGGCTACACGTACCCGGG +
Preference number: 4 (lower is better)
Translates to: LLANLVGRWGSRQLVLKQIQLCR*GLHVPG
Trigger: CCCGGGTACGTGTAGCCCTCACCTGCATAGTTGTAT...CTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGCAAGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR TCA 90 bp GAGATTGATTCTCAGGAGACCTGGATATATGCTGAGCTGTCAGTGCATCCTGGCCATAGAGCAGCGGATTaGGGCAGCAGTGCATGTACC +
Preference number: 4 (lower is better)
Translates to: EIDSQETWIYAELSVHPGHRAAD*GSSACT
Trigger: GGTACATGCACTGCTGCCTCAATCCGCTGCTCTATG...GCCAGGATGCACTGACAGCTCAGCATATATCCAGGTCTCCTGAGAATCAATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp CTACTTGCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGAACGCCTCTGGCCTCTaGAGACCAGCAGAACAGCTA +
Preference number: 4 (lower is better)
Translates to: LLANLVGRWGSRQLVLKQNASGL*RPAEQL
Trigger: TAGCTGTTCTGCTGGTCTCCAGAGGCCAGAGGCGTT...CTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGCAAGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp ACAAGGAGGACAAGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGGCTACAGAATCGTAGGGAGAGGTaGTGTTTTCCAGAAGAAAGG +
Preference number: 4 (lower is better)
Translates to: TRRTSTWSVLGLGLRRLQNRRER*CFPEER
Trigger: CCTTTCTTCTGGAAAACAGCACCTCTCCCTACGATT...CTGTAGCCTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp AATTGGGCAAATATTGAGATACTGAGATGGGCACATTCAGTGCTGACAACGCCTCAGGCTGAAATCCTGTaGGCAGGGCGGGGAGTCAGA +
Preference number: 4 (lower is better)
Translates to: NWANIEILRWAHSVLTTPQAEIL*AGRGVR
Trigger: TCTGACTCCCCGCCCTGCCCACAGGATTTCAGCCTG...AGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATCTCAATATTTGCCCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp AATTGGGCAAATATTGAGATACTGAGATGGGCACATTCAGTGCTGACAACGCCTGGGCCGAAAACCCACTaGACAGCAGCATCCACTGCC +
Preference number: 4 (lower is better)
Translates to: NWANIEILRWAHSVLTTPGPKTH*TAASTA
Trigger: GGCAGTGGATGCTGCTGTCCAGTGGGTTTTCGGCCC...AGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATCTCAATATTTGCCCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp AATTGGGCAAATATTGAGATACTGAGATGGGCACATTCAGTGCTGACAACGCCTTGCTGCTCAGGGCAGTaGGCTGACTCAGTAGCACAG +
Preference number: 4 (lower is better)
Translates to: NWANIEILRWAHSVLTTPCCSGQ*ADSVAQ
Trigger: CTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCA...AGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATCTCAATATTTGCCCAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp AATTGGGCAAATATTGAGATACTGAGATGGGCACATTCAGTGCTGACAACGCCTGTACACGCAGAGCAGTaGGACCCACCTGTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: NWANIEILRWAHSVLTTPVHAEQ*DPPVGS
Trigger: ACTTCCCACAGGTGGGTCGCACTGCTCTGCGTGTAC...AGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATCTCAATATTTGCCCAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp ACAAGGAGGACAAGCACTTGGAGTGTGTTAGGACTTGGGCTGCGCAGGCTACAGAACAACATCCACATTTaGTCTCTGAACTTCACTCCC +
Preference number: 4 (lower is better)
Translates to: TRRTSTWSVLGLGLRRLQNNIHI*SLNFTP
Trigger: GGGAGTGAAGTTCAGAGAGCAAATGTGGATGTTGTT...CTGTAGCCTGCGCAGCCCAAGTCCTAACACACTCCAAGTGCTTGTCCTCCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR GCA 90 bp GAGATTGATTCTCAGGAGACCTGGATATATGCTGAGCTGTCAGTGCATCCTGGCCAGCAGGAAGGCCCCTaGATAGAAGTTGATGTTGAA +
Preference number: 4 (lower is better)
Translates to: EIDSQETWIYAELSVHPGQQEGP*IEVDVE
Trigger: TTCAACATCAACTTCTATGCAGGGGCCTTCCTGCTG...GCCAGGATGCACTGACAGCTCAGCATATATCCAGGTCTCCTGAGAATCAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CCA 90 bp AATTGGGCAAATATTGAGATACTGAGATGGGCACATTCAGTGCTGACAACGCCTAGTGCGACCCACCTGTaGGAAGTTGTACTGGCAATG +
Preference number: 4 (lower is better)
Translates to: NWANIEILRWAHSVLTTPSATHL*EVVLAM
Trigger: CATTGCCAGTACAACTTCCCACAGGTGGGTCGCACT...AGGCGTTGTCAGCACTGAATGTGCCCATCTCAGTATCTCAATATTTGCCCAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS TCA 90 bp GCCAGGTGGAGCAGGAAGGTGTCCGTGCTGCTCAGGGCAGTGCGCTaGCTCAGTAGCACAGCAGCCACCGCCCCATTGCCTAGCAGCCCC +
Preference number: 5 (lower is better)
Translates to: ARWSRKVSVLLRAVR*LSSTAATAPLPSSP
Trigger: GGGGCTGCTAGGCAATGGGGCGGTGGCTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCTCCACCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 90 bp GCAGAACATCGGCTACAGCCAGGTGGAGCAGGAAGGTGTCCGTGCTaGTCAGGGCAGTGCGCTGACTCAGTAGCACAGCAGCCACCGCCC +
Preference number: 5 (lower is better)
Translates to: AEHRLQPGGAGRCPC*SGQCADSVAQQPPP
Trigger: GGGCGGTGGCTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCTCCACCTGGCTGTAGCCGATGTTCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 90 bp CTACAGCCAGGTGGAGCAGGAAGGTGTCCGTGCTGCTCAGGGCAGTaGGCTGACTCAGTAGCACAGCAGCCACCGCCCCATTGCCTAGCA +
Preference number: 5 (lower is better)
Translates to: LQPGGAGRCPCCSGQ*ADSVAQQPPPHCLA
Trigger: TGCTAGGCAATGGGGCGGTGGCTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCTCCACCTGGCTGTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 90 bp CCAGCAGAACATCGGCTACAGCCAGGTGGAGCAGGAAGGTGTCCGTaGTGCTCAGGGCAGTGCGCTGACTCAGTAGCACAGCAGCCACCG +
Preference number: 5 (lower is better)
Translates to: PAEHRLQPGGAGRCP*CSGQCADSVAQQPP
Trigger: CGGTGGCTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCTCCACCTGGCTGTAGCCGATGTTCTGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 90 bp TCAGTTGTCTCAGACCAGGATGATTCTCTCCGTGAAGATGACGGCTaGCGCTGGGGCCCTCTCTGGTCAGAGCGGCCCAGGCGCGTGAAC +
Preference number: 5 (lower is better)
Translates to: SVVSDQDDSLREDDG*RWGPLWSERPRRVN
Trigger: GTTCACGCGCCTGGGCCGCTCTGACCAGAGAGGGCCCCAGCGGCAGCCGTCATCTTCACGGAGAGAATCATCCTGGTCTGAGACAACTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CCA 90 bp GTCTCAGACCAGGATGATTCTCTCCGTGAAGATGACGGCTGCCGCTaGGGCCCTCTCTGGTCAGAGCGGCCCAGGCGCGTGAACAACATC +
Preference number: 5 (lower is better)
Translates to: VSDQDDSLREDDGCR*GPLWSERPRRVNNI
Trigger: GATGTTGTTCACGCGCCTGGGCCGCTCTGACCAGAGAGGGCCCCAGCGGCAGCCGTCATCTTCACGGAGAGAATCATCCTGGTCTGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS TCA 90 bp CAGCGGATTGAGGCAGCAGTGCATGTACCCCATGCCCGAGGTGACTaGCTTGGCCACATCCACGTGGCTTTCTCGACCACAGTTGCGGGC +
Preference number: 5 (lower is better)
Translates to: QRIEAAVHVPHARGD*LGHIHVAFSTTVAG
Trigger: GCCCGCAACTGTGGTCGAGAAAGCCACGTGGATGTGGCCAAGTCAGTCACCTCGGGCATGGGGTACATGCACTGCTGCCTCAATCCGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 90 bp CAGCAGGAAGGCCCCTGCATAGAAGTTGATGTTGAACAAGGCGCCTaGCACTTTGCAGAGGCCAGGGCCGAAAACCCACTGGACAGCAGC +
Preference number: 5 (lower is better)
Translates to: QQEGPCIEVDVEQGA*HFAEARAENPLDSS
Trigger: GCTGCTGTCCAGTGGGTTTTCGGCCCTGGCCTCTGCAAAGTGGCAGGCGCCTTGTTCAACATCAACTTCTATGCAGGGGCCTTCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CCA 90 bp AACAAGGCGCCTGCCACTTTGCAGAGGCCAGGGCCGAAAACCCACTaGACAGCAGCATCCACTGCCCACAATGGAAGAGTTAACACCAGC +
Preference number: 5 (lower is better)
Translates to: NKAPATLQRPGPKTH*TAASTAHNGRVNTS
Trigger: GCTGGTGTTAACTCTTCCATTGTGGGCAGTGGATGCTGCTGTCCAGTGGGTTTTCGGCCCTGGCCTCTGCAAAGTGGCAGGCGCCTTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CAA 90 bp ATTGATTCTCAGGAGACCTGGATATATGCTGAGCTGTCAGTGCATCCTGGCAGCGCAGCCACCGCCCCATaGCCTAGCAGCCCCAGCAAG +
Preference number: 5 (lower is better)
Translates to: IDSQETWIYAELSVHPGSAATAP*PSSPSK
Trigger: CTTGCTGGGGCTGCTAGGCAATGGGGCGGTGGCTGC...GCTGCCAGGATGCACTGACAGCTCAGCATATATCCAGGTCTCCTGAGAATCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS TCA 90 bp CGTGGCTTTCTCGACCACAGTTGCGGGCCAAAACTCCCACATCCATaGGGATATCCACTAGCACCACCAGGTGATAGGGGGTCCAGCAGA +
Preference number: 5 (lower is better)
Translates to: RGFLDHSCGPKLPHP*GYPLAPPGDRGSSR
Trigger: TCTGCTGGACCCCCTATCACCTGGTGGTGCTAGTGGATATCCTCATGGATGTGGGAGTTTTGGCCCGCAACTGTGGTCGAGAAAGCCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CAA 90 bp GCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGCAAGATAAGGCGCCTGCCACTTaGCAGAGGCCAGGGCCGAAA +
Preference number: 5 (lower is better)
Translates to: ANLVGRWGSRQLVLKQQDKAPAT*QRPGPK
Trigger: TTTCGGCCCTGGCCTCTGCAAAGTGGCAGGCGCCTT...ATCTTGCTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 90 bp GCTCAGATATCTGTCGAAGCTTATACAAGCCAGCAGGAAGGCCCCTaGATAGAAGTTGATGTTGAACAAGGCGCCTGCCACTTTGCAGAG +
Preference number: 5 (lower is better)
Translates to: AQISVEAYTSQQEGP*IEVDVEQGACHFAE
Trigger: CTCTGCAAAGTGGCAGGCGCCTTGTTCAACATCAACTTCTATGCAGGGGCCTTCCTGCTGGCTTGTATAAGCTTCGACAGATATCTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CAA 90 bp GAGATTGATTCTCAGGAGACCTGGATATATGCTGAGCTGTCAGTGCATCCTGGCGGTAGGAGGCCTCAGTaGTCTCAGACCAGGATGATT +
Preference number: 5 (lower is better)
Translates to: EIDSQETWIYAELSVHPGGRRPQ*SQTRMI
Trigger: AATCATCCTGGTCTGAGACAACTGAGGCCTCCTACC...GCCAGGATGCACTGACAGCTCAGCATATATCCAGGTCTCCTGAGAATCAATCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS-3UTR CAA 90 bp GCTAATTTAGTAGGGCGGTGGGGCTCCAGGCAGCTAGTTCTAAAACAGCAAGATGAACAACATCCACATTaGCTCTCTGAACTTCACTCC +
Preference number: 5 (lower is better)
Translates to: ANLVGRWGSRQLVLKQQDEQHPH*LSELHS
Trigger: GGAGTGAAGTTCAGAGAGCAAATGTGGATGTTGTTC...ATCTTGCTGTTTTAGAACTAGCTGCCTGGAGCCCCACCGCCCTACTAAATTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CCA 72 bp CAGGATGATTCTCTCCGTGAAGATGACGGCTGCCGCTaGGGCCCTCTCTGGTCAGAGCGGCCCAGGCGCGTG +
Preference number: 6 (lower is better)
Translates to: QDDSLREDDGCR*GPLWSERPRRV
Trigger: CACGCGCCTGGGCCGCTCTGACCAGAGAGGGCCCCAGCGGCAGCCGTCATCTTCACGGAGAGAATCATCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS TCA 72 bp AGCAGGAAGGTGTCCGTGCTGCTCAGGGCAGTGCGCTaGCTCAGTAGCACAGCAGCCACCGCCCCATTGCCT +
Preference number: 6 (lower is better)
Translates to: SRKVSVLLRAVR*LSSTAATAPLP
Trigger: AGGCAATGGGGCGGTGGCTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 72 bp CGGCTACAGCCAGGTGGAGCAGGAAGGTGTCCGTGCTaGTCAGGGCAGTGCGCTGACTCAGTAGCACAGCAG +
Preference number: 6 (lower is better)
Translates to: RLQPGGAGRCPC*SGQCADSVAQQ
Trigger: CTGCTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCTCCACCTGGCTGTAGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 72 bp TCAGACCAGGATGATTCTCTCCGTGAAGATGACGGCTaGCGCTGGGGCCCTCTCTGGTCAGAGCGGCCCAGG +
Preference number: 6 (lower is better)
Translates to: SDQDDSLREDDG*RWGPLWSERPR
Trigger: CCTGGGCCGCTCTGACCAGAGAGGGCCCCAGCGGCAGCCGTCATCTTCACGGAGAGAATCATCCTGGTCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 72 bp CATCGGCTACAGCCAGGTGGAGCAGGAAGGTGTCCGTaGTGCTCAGGGCAGTGCGCTGACTCAGTAGCACAG +
Preference number: 6 (lower is better)
Translates to: HRLQPGGAGRCP*CSGQCADSVAQ
Trigger: CTGTGCTACTGAGTCAGCGCACTGCCCTGAGCAGCACGGACACCTTCCTGCTCCACCTGGCTGTAGCCGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS TCA 72 bp GAGGCAGCAGTGCATGTACCCCATGCCCGAGGTGACTaGCTTGGCCACATCCACGTGGCTTTCTCGACCACA +
Preference number: 6 (lower is better)
Translates to: EAAVHVPHARGD*LGHIHVAFSTT
Trigger: TGTGGTCGAGAAAGCCACGTGGATGTGGCCAAGTCAGTCACCTCGGGCATGGGGTACATGCACTGCTGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CAA 90 bp GGATTGAGGCAGCAGTGCATGTACCCCATGCCCGAGGTGACTGACTaGGCCACATCCACGTGGCTTTCTCGACCACAGTTGCGGGCCAAA +
Preference number: 6 (lower is better)
Translates to: GLRQQCMYPMPEVTD*ATSTWLSRPQLRAK
Trigger: TTTGGCCCGCAACTGTGGTCGAGAAAGCCACGTGGATGTGGCCAAGTCAGTCACCTCGGGCATGGGGTACATGCACTGCTGCCTCAATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 72 bp GGCCCCTGCATAGAAGTTGATGTTGAACAAGGCGCCTaGCACTTTGCAGAGGCCAGGGCCGAAAACCCACTG +
Preference number: 6 (lower is better)
Translates to: GPCIEVDVEQGA*HFAEARAENPL
Trigger: CAGTGGGTTTTCGGCCCTGGCCTCTGCAAAGTGGCAGGCGCCTTGTTCAACATCAACTTCTATGCAGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CAA 72 bp CAGCAGTGCATGTACCCCATGCCCGAGGTGACTGACTaGGCCACATCCACGTGGCTTTCTCGACCACAGTTG +
Preference number: 6 (lower is better)
Translates to: QQCMYPMPEVTD*ATSTWLSRPQL
Trigger: CAACTGTGGTCGAGAAAGCCACGTGGATGTGGCCAAGTCAGTCACCTCGGGCATGGGGTACATGCACTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS TCA 72 bp CTCGACCACAGTTGCGGGCCAAAACTCCCACATCCATaGGGATATCCACTAGCACCACCAGGTGATAGGGGG +
Preference number: 6 (lower is better)
Translates to: LDHSCGPKLPHP*GYPLAPPGDRG
Trigger: CCCCCTATCACCTGGTGGTGCTAGTGGATATCCTCATGGATGTGGGAGTTTTGGCCCGCAACTGTGGTCGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CAA 90 bp GAGGTGACTGACTTGGCCACATCCACGTGGCTTTCTCGACCACAGTaGCGGGCCAAAACTCCCACATCCATGAGGATATCCACTAGCACC +
Preference number: 6 (lower is better)
Translates to: EVTDLATSTWLSRPQ*RAKTPTSMRISTST
Trigger: GGTGCTAGTGGATATCCTCATGGATGTGGGAGTTTTGGCCCGCAACTGTGGTCGAGAAAGCCACGTGGATGTGGCCAAGTCAGTCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 72 bp GGGGGTCCCTGCGGTAGATCTGGGTGGCGTGCACTATaGTCAGATATCTGTCGAAGCTTATACAAGCCAGCA +
Preference number: 6 (lower is better)
Translates to: GGPCGRSGWRAL*SDICRSLYKPA
Trigger: TGCTGGCTTGTATAAGCTTCGACAGATATCTGAGCATAGTGCACGCCACCCAGATCTACCGCAGGGACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CCA 72 bp CAGGAAGGTTCTGTCAAAGTTCAGGCTGAAATCCTGTaGGCAGGGCGGGGAGTCAGAGAAGTCGCTCTCGTT +
Preference number: 6 (lower is better)
Translates to: QEGSVKVQAEIL*AGRGVREVALV
Trigger: AACGAGAGCGACTTCTCTGACTCCCCGCCCTGCCCACAGGATTTCAGCCTGAACTTTGACAGAACCTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS CCA 72 bp ACCACTACCACTAGCCTCATAGCTCGAAAACGCCTCTaGCCTCTGGAGACCAGCAGAACAGCTAGGATATGG +
Preference number: 6 (lower is better)
Translates to: TTTTSLIARKRL*PLETSRTARIW
Trigger: CCATATCCTAGCTGTTCTGCTGGTCTCCAGAGGCCAGAGGCGTTTTCGAGCTATGAGGCTAGTGGTAGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7
CDS GCA 72 bp TCTGTCGAAGCTTATACAAGCCAGCAGGAAGGCCCCTaGATAGAAGTTGATGTTGAACAAGGCGCCTGCCAC +
Preference number: 6 (lower is better)
Translates to: SVEAYTSQQEGP*IEVDVEQGACH
Trigger: GTGGCAGGCGCCTTGTTCAACATCAACTTCTATGCAGGGGCCTTCCTGCTGGCTTGTATAAGCTTCGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056614.7