Pregenerated sensors for CXCR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026180Ensembl transcript IDs: ENSMUST00000027372.8, ENSMUST00000106899.4
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGGGATCAGGGCCCACCTTCAGGGCTTTCCCATCATCCCTAACTaGAGCTGTGTCTTCTACACGAACTCCCCACCCTTCCTCACCCAG | + |
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Preference number: 1 (lower is better) Translates to: TGIRAHLQGFPIIPN*SCVFYTNSPPFLTQ Trigger: CTGGGTGAGGAAGGGTGGGGAGTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGCCCTGATCCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR TCA 90 bp | CCCAATCCACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATTaGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTG | + |
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Preference number: 1 (lower is better) Translates to: PNPPTPIPGPGIPLY*GIEPSQDQGPLLPL Trigger: CAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCTCAATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGTGGATTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR TCA 90 bp | ATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTTCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACT | + |
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Preference number: 1 (lower is better) Translates to: ISLQMVVSHHVVAGI*TSDLWKSSRVLLPT Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR TCA 90 bp | CATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACTaGCTAGGCCATCCTCTGCTACATATACAGCTAGAGCCACAAGTT | + |
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Preference number: 1 (lower is better) Translates to: HRAFTGPRASPPIDD*LGHPLLHIQLEPQV Trigger: AACTTGTGGCTCTAGCTGTATATGTAGCAGAGGATGGCCTAGTCAGTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | GCATCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTCGGACCTTTGGAAGAGCAGTCGGGTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: ASDLVTDGCEPPCGC*DLNFGPLEEQSGAL Trigger: AAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | TCCTCAGGAGACAGCTATATCAGCCTCCTGTCAGCAGGTTCTTGTTaGCATCTGCCTAGTGTCTGGGTTTGGTGGTTGTTTATGGGATGG | + |
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Preference number: 1 (lower is better) Translates to: SSGDSYISLLSAGSC*HLPSVWVWWLFMGW Trigger: CCATCCCATAAACAACCACCAAACCCAGACACTAGGCAGATGCCAACAAGAACCTGCTGACAGGAGGCTGATATAGCTGTCTCCTGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR TCA 90 bp | TCAGACACTCCAGAAGAGGGCATCAGATCTCGTTACAGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTTGGA | + |
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Preference number: 1 (lower is better) Translates to: SDTPEEGIRSRYRWL*ATMWLLGFELRTFG Trigger: TCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGATGCCCTCTTCTGGAGTGTCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | CATACTGATGTTCCTCCTCTGGGGCTTCAGACCCCTTTAGCTCCTTaGATACCTTCGCTAGCTTCTTCATTTGGGACCTTGTCCTCTATC | + |
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Preference number: 1 (lower is better) Translates to: HTDVPPLGLQTPLAP*IPSLASSFGTLSSI Trigger: GATAGAGGACAAGGTCCCAAATGAAGAAGCTAGCGAAGGTATCCAAGGAGCTAAAGGGGTCTGAAGCCCCAGAGGAGGAACATCAGTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | TCAGACCCCTTTAGCTCCTTGGATACCTTCGCTAGCTTCTTCATTTaGGACCTTGTCCTCTATCCAATGGATGATTGTGAGCATCCACTT | + |
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Preference number: 1 (lower is better) Translates to: SDPFSSLDTFASFFI*DLVLYPMDDCEHPL Trigger: AAGTGGATGCTCACAATCATCCATTGGATAGAGGACAAGGTCCCAAATGAAGAAGCTAGCGAAGGTATCCAAGGAGCTAAAGGGGTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | CACCCTTCCTCACCCAGCCTCCAGTCAACACTATTTGATTATTTTTaGCACTTCTCATTGTGGACGCTCTTTTGTTGTGTAGAGACACCT | + |
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Preference number: 1 (lower is better) Translates to: HPSSPSLQSTLFDYF*HFSLWTLFCCVETP Trigger: AGGTGTCTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAGTGTTGACTGGAGGCTGGGTGAGGAAGGGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | ATACCTTCGCTAGCTTCTTCATTTGGGACCTTGTCCTCTATCCAATaGATGATTGTGAGCATCCACTTCTGTATTTTCCAGGCACTGGCA | + |
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Preference number: 1 (lower is better) Translates to: IPSLASSFGTLSSIQ*MIVSIHFCIFQALA Trigger: TGCCAGTGCCTGGAAAATACAGAAGTGGATGCTCACAATCATCCATTGGATAGAGGACAAGGTCCCAAATGAAGAAGCTAGCGAAGGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | GTATCTCACTGTAATTGTAACGTGTGCTTCTTAGAAAAGAGTGTTTaGGGTCTAGTGTTAGGATGGATCAACTCTATCAGTAGGCATACC | + |
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Preference number: 1 (lower is better) Translates to: VSHCNCNVCFLEKSV*GLVLGWINSISRHT Trigger: GGTATGCCTACTGATAGAGTTGATCCATCCTAACACTAGACCCCAAACACTCTTTTCTAAGAAGCACACGTTACAATTACAGTGAGATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CCA 90 bp | AGCCTCCAGTCAACACTATTTGATTATTTTTGGCACTTCTCATTGTaGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTACCCA | + |
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Preference number: 1 (lower is better) Translates to: SLQSTLFDYFWHFSL*TLFCCVETPCLTYP Trigger: TGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAGTGTTGACTGGAGGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CAA 90 bp | CCCCAATCCACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATaGAGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATT | + |
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Preference number: 2 (lower is better) Translates to: PQSTYSHSWSWHSPI*RHRAFTGPRASPPI Trigger: AATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCTCAATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGTGGATTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR TCA 90 bp | GCCCACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGTGCTATGTTCCTGTGTaGGGGGACTCTGGTACTCGT | + |
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Preference number: 2 (lower is better) Translates to: AHLQGFPIIPNWSCVFYTCYVPV*GDSGTR Trigger: ACGAGTACCAGAGTCCCCTCACACAGGAACATAGCA...CGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAGAGCTCCTCAGGAGACAGCTATATCAGCCTCCTGTCAGCAGGTTCTTGTTTGCTATGTTCCTGTGTaGGGGGACTCTGGTACTCGT | + |
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Preference number: 2 (lower is better) Translates to: GRAPQETAISASCQQVLVCYVPV*GDSGTR Trigger: ACGAGTACCAGAGTCCCCTCACACAGGAACATAGCA...AACAAGAACCTGCTGACAGGAGGCTGATATAGCTGTCTCCTGAGGAGCTCTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CCA 90 bp | TCACACTACTACACAGGGATCAGGGCCCACCTTCAGGGCTTTCCCATCATCCCTGTAGGCATACCAAGATaGAAGGGAGCAGACAGCCAA | + |
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Preference number: 2 (lower is better) Translates to: SHYYTGIRAHLQGFPIIPVGIPR*KGADSQ Trigger: TTGGCTGTCTGCTCCCTTCCATCTTGGTATGCCTAC...AGGGATGATGGGAAAGCCCTGAAGGTGGGCCCTGATCCCTGTGTAGTAGTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CAA 90 bp | GATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCAC | + |
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Preference number: 2 (lower is better) Translates to: DLVTDGCEPPCGCWD*NFGPLEEQSGALTH Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR TCA 90 bp | GCCCACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGCAGCATACAAATGTCTaGACCCTGGCTTTCAATTTT | + |
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Preference number: 2 (lower is better) Translates to: AHLQGFPIIPNWSCVFYTQHTNV*TLAFNF Trigger: AAAATTGAAAGCCAGGGTTCAGACATTTGTATGCTG...CGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CCA 90 bp | GCCCACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGTTAGAAAAGAGTGTTTaGGGTCTAGTGTTAGGATGG | + |
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Preference number: 2 (lower is better) Translates to: AHLQGFPIIPNWSCVFYTLEKSV*GLVLGW Trigger: CCATCCTAACACTAGACCCCAAACACTCTTTTCTAA...CGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR TCA 90 bp | ACTGATGTTCCTCCTCTGGGGCTTCAGACCCCTTTAGCTCCTTGGATACCTTCGCAGCATACAAATGTCTaGACCCTGGCTTTCAATTTT | + |
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Preference number: 2 (lower is better) Translates to: TDVPPLGLQTPLAPWIPSQHTNV*TLAFNF Trigger: AAAATTGAAAGCCAGGGTTCAGACATTTGTATGCTG...CGAAGGTATCCAAGGAGCTAAAGGGGTCTGAAGCCCCAGAGGAGGAACATCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CCA 90 bp | GCCCACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGCTATTTGATTATTTTTaGCACTTCTCATTGTGGACG | + |
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Preference number: 2 (lower is better) Translates to: AHLQGFPIIPNWSCVFYTLFDYF*HFSLWT Trigger: CGTCCACAATGAGAAGTGCCAAAAATAATCAAATAG...CGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CCA 90 bp | TATATCAGCCTCCTGTCAGCAGGTTCTTGTTGGCATCTGCCTAGTGTCTGGGTTTTAGAAAAGAGTGTTTaGGGTCTAGTGTTAGGATGG | + |
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Preference number: 2 (lower is better) Translates to: YISLLSAGSCWHLPSVWVLEKSV*GLVLGW Trigger: CCATCCTAACACTAGACCCCAAACACTCTTTTCTAA...AACCCAGACACTAGGCAGATGCCAACAAGAACCTGCTGACAGGAGGCTGATATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CCA 90 bp | TTTAACACTTTTGTTACAGTGGTAATGAGTGCATTCACACTACTACACAGGGATGTAGGCATACCAAGATaGAAGGGAGCAGACAGCCAA | + |
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Preference number: 2 (lower is better) Translates to: FNTFVTVVMSAFTLLHRDVGIPR*KGADSQ Trigger: TTGGCTGTCTGCTCCCTTCCATCTTGGTATGCCTAC...ATCCCTGTGTAGTAGTGTGAATGCACTCATTACCACTGTAACAAAAGTGTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CCA 90 bp | GAGGTGCTAGGATTTGAGCCTGAGTTCTTAGAAATGTTAAATAAGCACTCTCCCTGGCACTTCTCATTGTaGACGCTCTTTTGTTGTGTA | + |
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Preference number: 2 (lower is better) Translates to: EVLGFEPEFLEMLNKHSPWHFSL*TLFCCV Trigger: TACACAACAAAAGAGCGTCCACAATGAGAAGTGCCA...GGGAGAGTGCTTATTTAACATTTCTAAGAACTCAGGCTCAAATCCTAGCACCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CAA 90 bp | CCCAGCCTCCAGTCAACACTATTTGATTATTTTTGGCACTTCTCATaGTGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTAC | + |
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Preference number: 2 (lower is better) Translates to: PSLQSTLFDYFWHFS*WTLFCCVETPCLTY Trigger: GTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAGTGTTGACTGGAGGCTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | AGGGCCCACCTTCAGGGCTTTCCCATCATCCCTAACTaGAGCTGTGTCTTCTACACGAACTCCCCACCCTTC | + |
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Preference number: 3 (lower is better) Translates to: RAHLQGFPIIPN*SCVFYTNSPPF Trigger: GAAGGGTGGGGAGTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR TCA 72 bp | CCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATTaGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: PTPIPGPGIPLY*GIEPSQDQGPL Trigger: GAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCTCAATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | TCCCCAATCCACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATTGAGGCATTGAACTTCGGACCTTaGGAAGAGCAGTCGGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: SPIHLLPFLVLAFPYIEALNFGP*EEQSGA Trigger: AGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAA...TGCCTCAATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGTGGATTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | GTTCCTCCTCTGGGGCTTCAGACCCCTTTAGCTCCTTaGATACCTTCGCTAGCTTCTTCATTTGGGACCTTG | + |
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Preference number: 3 (lower is better) Translates to: VPPLGLQTPLAP*IPSLASSFGTL Trigger: CAAGGTCCCAAATGAAGAAGCTAGCGAAGGTATCCAAGGAGCTAAAGGGGTCTGAAGCCCCAGAGGAGGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | CCTGCTCCCCAATCCACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATTGTCTTCATTTGGGACCTaGTCCTCTATCCAATGGATG | + |
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Preference number: 3 (lower is better) Translates to: PAPQSTYSHSWSWHSPILSSFGT*SSIQWM Trigger: CATCCATTGGATAGAGGACAAGGTCCCAAATGAAGA...CAATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGTGGATTGGGGAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR TCA 72 bp | TTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACTaGCTAGGCCATCCTCTGCTACATATACAGCTAGAG | + |
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Preference number: 3 (lower is better) Translates to: FTGPRASPPIDD*LGHPLLHIQLE Trigger: CTCTAGCTGTATATGTAGCAGAGGATGGCCTAGTCAGTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | CTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTTCGGACCTTTGGAAGAGCAGTCG | + |
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Preference number: 3 (lower is better) Translates to: LVTDGCEPPCGC*DLNFGPLEEQS Trigger: CGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR GCA 72 bp | GATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTCGGACCTTTGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLVTDGCEPPCG*WDLNFGPLEEQ Trigger: CTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | GACAGCTATATCAGCCTCCTGTCAGCAGGTTCTTGTTaGCATCTGCCTAGTGTCTGGGTTTGGTGGTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: DSYISLLSAGSC*HLPSVWVWWLF Trigger: AAACAACCACCAAACCCAGACACTAGGCAGATGCCAACAAGAACCTGCTGACAGGAGGCTGATATAGCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | CCCTGCTCCCCAATCCACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATTTTACCCATTCATCTGTaGGCCATCATTTTCATGATG | + |
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Preference number: 3 (lower is better) Translates to: PCSPIHLLPFLVLAFPYILPIHL*AIIFMM Trigger: CATCATGAAAATGATGGCCAACAGATGAATGGGTAA...AATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGTGGATTGGGGAGCAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR GCA 72 bp | ATATCAGCCTCCTGTCAGCAGGTTCTTGTTGGCATCTaGCTAGTGTCTGGGTTTGGTGGTTGTTTATGGGAT | + |
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Preference number: 3 (lower is better) Translates to: ISASCQQVLVGI*LVSGFGGCLWD Trigger: ATCCCATAAACAACCACCAAACCCAGACACTAGGCAGATGCCAACAAGAACCTGCTGACAGGAGGCTGATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | CCCTGCTCCCCAATCCACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATTTTTTCTACTTCCTCATaGTCACTTGCCATTTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: PCSPIHLLPFLVLAFPYIFSTSS*SLAIFS Trigger: AGAGAAAATGGCAAGTGACAATGAGGAAGTAGAAAA...AATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGTGGATTGGGGAGCAGGG 48% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | CACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGAACTTACCCATTCATCTGTaGGCCATCATTTTCATGATG | + |
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Preference number: 3 (lower is better) Translates to: HLQGFPIIPNWSCVFYTNLPIHL*AIIFMM Trigger: CATCATGAAAATGATGGCCAACAGATGAATGGGTAA...GTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | TGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTACCCATTCATCTGTCTTCCTCATTGTCACTaGCCATTTTCTCTCCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: WTLFCCVETPCLTYPFICLPHCH*PFSLLH Trigger: GTGGAGGAGAGAAAATGGCAAGTGACAATGAGGAAG...ACAGATGAATGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | CTAGCTTCTTCATTTGGGACCTTGTCCTCTATCCAATaGATGATTGTGAGCATCCACTTCTGTATTTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: LASSFGTLSSIQ*MIVSIHFCIFQ Trigger: CTGGAAAATACAGAAGTGGATGCTCACAATCATCCATTGGATAGAGGACAAGGTCCCAAATGAAGAAGCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | GAGGTGCTAGGATTTGAGCCTGAGTTCTTAGAAATGTTAAATAAGCACTCTCCCTTTTCTACTTCCTCATaGTCACTTGCCATTTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: EVLGFEPEFLEMLNKHSPFSTSS*SLAIFS Trigger: AGAGAAAATGGCAAGTGACAATGAGGAAGTAGAAAA...GGGAGAGTGCTTATTTAACATTTCTAAGAACTCAGGCTCAAATCCTAGCACCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | TTCTTAGAAAAGAGTGTTTGGGGTCTAGTGTTAGGATaGATCAACTCTATCAGTAGGCATACCAAGATGGAA | + |
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Preference number: 3 (lower is better) Translates to: FLEKSVWGLVLG*INSISRHTKME Trigger: TTCCATCTTGGTATGCCTACTGATAGAGTTGATCCATCCTAACACTAGACCCCAAACACTCTTTTCTAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | TGTTTGTTTGTCGAGGTGCTAGGATTTGAGCCTGAGTTCTTAGAAATGTTAAATTTTTGGCACTTCTCATaGTGGACGCTCTTTTGTTGT | + |
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Preference number: 3 (lower is better) Translates to: CLFVEVLGFEPEFLEMLNFWHFS*WTLFCC Trigger: ACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAA...ATTTAACATTTCTAAGAACTCAGGCTCAAATCCTAGCACCTCGACAAACAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR CCA 72 bp | TGTAATTGTAACGTGTGCTTCTTAGAAAAGAGTGTTTaGGGTCTAGTGTTAGGATGGATCAACTCTATCAGT | + |
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Preference number: 3 (lower is better) Translates to: CNCNVCFLEKSV*GLVLGWINSIS Trigger: ACTGATAGAGTTGATCCATCCTAACACTAGACCCCAAACACTCTTTTCTAAGAAGCACACGTTACAATTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | TGTTTGTTTGTCGAGGTGCTAGGATTTGAGCCTGAGTTCTTAGAAATGTTAAATTGTTTGTTTGTTTGTTaGTTTGTCGAGGTGCTAGGA | + |
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Preference number: 3 (lower is better) Translates to: CLFVEVLGFEPEFLEMLNCLFVC*FVEVLG Trigger: TCCTAGCACCTCGACAAACAAACAAACAAACAAACA...ATTTAACATTTCTAAGAACTCAGGCTCAAATCCTAGCACCTCGACAAACAAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
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| 3UTR-3UTR CAA 90 bp | TTTAACACTTTTGTTACAGTGGTAATGAGTGCATTCACACTACTACACAGGGATTGTTTGTTTGTTTGTTaGTTTGTCGAGGTGCTAGGA | + |
|
Preference number: 3 (lower is better) Translates to: FNTFVTVVMSAFTLLHRDCLFVC*FVEVLG Trigger: TCCTAGCACCTCGACAAACAAACAAACAAACAAACA...ATCCCTGTGTAGTAGTGTGAATGCACTCATTACCACTGTAACAAAAGTGTTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| 3UTR CCA 72 bp | TCAACACTATTTGATTATTTTTGGCACTTCTCATTGTaGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTA | + |
|
Preference number: 3 (lower is better) Translates to: STLFDYFWHFSL*TLFCCVETPCL Trigger: TAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAGTGTTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | CCACAGTCTCTGGTAATGAGCCATGCTGAAAGACAAGAAGGAACCCCGAGGGGCGGACGACAGCGAAGATaGCCCGCATGGCCCGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PQSLVMSHAERQEGTPRGGRQRR*PAWPGA Trigger: AGCACCGGGCCATGCGGGTCATCTTCGCTGTCGTCC...GCCCCTCGGGGTTCCTTCTTGTCTTTCAGCATGGCTCATTACCAGAGACTGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | CACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGAACGGACGACAGCGAAGATaGCCCGCATGGCCCGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: HLQGFPIIPNWSCVFYTNGRQRR*PAWPGA Trigger: AGCACCGGGCCATGCGGGTCATCTTCGCTGTCGTCC...GTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | CCACAGTCTCTGGTAATGAGCCATGCTGAAAGACAAGAAGGAACCCCGAGGGGCAGAGGGTGCGCAGTGTaGACCCGTAGCAGAACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PQSLVMSHAERQEGTPRGRGCAV*TRSRTA Trigger: TGCTGTTCTGCTACGGGTTCACACTGCGCACCCTCT...GCCCCTCGGGGTTCCTTCTTGTCTTTCAGCATGGCTCATTACCAGAGACTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| 3UTR CAA 72 bp | ACCTACTCCCATTCCTGGTCCTGGCATTCCCCTATATaGAGGCATAGAGCCTTCACAGGACCAAGGGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: TYSHSWSWHSPI*RHRAFTGPRAS Trigger: AGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCTCAATATAGGGGAATGCCAGGACCAGGAATGGGAGTAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTCGGACCTTTGGAAGAGCAGTCGGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NFGPLEEQSGA Trigger: AGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | CCACAGTCTCTGGTAATGAGCCATGCTGAAAGACAAGAAGGAACCCCGAGGGGCTCCGGTTGTATAAGATaGCCAGCATCACCAAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: PQSLVMSHAERQEGTPRGSGCIR*PASPRS Trigger: ACTCCTTGGTGATGCTGGTCATCTTATACAACCGGA...GCCCCTCGGGGTTCCTTCTTGTCTTTCAGCATGGCTCATTACCAGAGACTGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | TATATCAGCCTCCTGTCAGCAGGTTCTTGTTGGCATCTGCCTAGTGTCTGGGTTGGTAGCGGTCCATGCTaGTGCAGGCTAGTAGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: YISLLSAGSCWHLPSVWVGSGPC*CRLVAE Trigger: TTCTGCTACTAGCCTGCATCAGCATGGACCGCTACC...AACCCAGACACTAGGCAGATGCCAACAAGAACCTGCTGACAGGAGGCTGATATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | GGCAGAGCTCCTCAGGAGACAGCTATATCAGCCTCCTGTCAGCAGGTTCTTGTTTCCGGTTGTATAAGATaGCCAGCATCACCAAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: GRAPQETAISASCQQVLVSGCIR*PASPRS Trigger: ACTCCTTGGTGATGCTGGTCATCTTATACAACCGGA...AACAAGAACCTGCTGACAGGAGGCTGATATAGCTGTCTCCTGAGGAGCTCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | GCCCACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGAACCTCCTTCACGTATaGGAATATCTTGCACAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: AHLQGFPIIPNWSCVFYTNLLHV*EYLAQG Trigger: ACCCTGTGCAAGATATTCTCATACGTGAAGGAGGTT...CGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | GACCTCTTTCTCCCTGTAATTGTAGAGGAGGGGCTGCATCAATTCAAATACCACGATTTCCAGGTTCTCTaGGTGGCATGGGACAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: DLFLPVIVEEGLHQFKYHDFQVL*VAWDSI Trigger: GATGCTGTCCCATGCCACTCAGAGAACCTGGAAATC...GTGGTATTTGAATTGATGCAGCCCCTCCTCTACAATTACAGGGAGAAAGAGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | TGGTACTCGTCTACTGGTAAGGTGAAGAGTTCCCTTTTTCTACTTCCTCATTGTGGTAGCGGTCCATGCTaGTGCAGGCTAGTAGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: WYSSTGKVKSSLFLLPHCGSGPC*CRLVAE Trigger: TTCTGCTACTAGCCTGCATCAGCATGGACCGCTACC...ACAATGAGGAAGTAGAAAAAGGGAACTCTTCACCTTACCAGTAGACGAGTACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | TGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTACCCATTCATCTGTAGAGGGTGCGCAGTGTaGACCCGTAGCAGAACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: WTLFCCVETPCLTYPFICRGCAV*TRSRTA Trigger: TGCTGTTCTGCTACGGGTTCACACTGCGCACCCTCT...ACAGATGAATGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | CACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGAACTTCGTAGAATTAAGATaGGCAGGGCCAGAATTACTG | + |
|
Preference number: 4 (lower is better) Translates to: HLQGFPIIPNWSCVFYTNFVELR*AGPELL Trigger: CAGTAATTCTGGCCCTGCCCATCTTAATTCTACGAA...GTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | GGCAGAGCTCCTCAGGAGACAGCTATATCAGCCTCCTGTCAGCAGGTTCTTGTTTGCCAGAGCTATAATTaGAAATATCAAGATCTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: GRAPQETAISASCQQVLVCQSYN*KYQDLH Trigger: GTGGAGATCTTGATATTTTCAATTATAGCTCTGGCA...AACAAGAACCTGCTGACAGGAGGCTGATATAGCTGTCTCCTGAGGAGCTCTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | TGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTACCCATTCATCTGTTCCAGGTTCTCTGAGTaGCATGGGACAGCATCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: WTLFCCVETPCLTYPFICSRFSE*HGTASG Trigger: GCCAGATGCTGTCCCATGCCACTCAGAGAACCTGGA...ACAGATGAATGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | TTGGCACTTCTCATTGTGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACGGGTTAAGGCAGCTGTaGAGGAAGCCAAGAATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LALLIVDALLLCRDTLFNGLRQL*RKPRIS Trigger: GGAGATTCTTGGCTTCCTCCACAGCTGCCTTAACCC...GTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| 3UTR CAA 72 bp | CCTTGGATACCTTCGCTAGCTTCTTCATTTGGGACCTaGTCCTCTATCCAATGGATGATTGTGAGCATCCAC | + |
|
Preference number: 4 (lower is better) Translates to: PWIPSLASSFGT*SSIQWMIVSIH Trigger: GTGGATGCTCACAATCATCCATTGGATAGAGGACAAGGTCCCAAATGAAGAAGCTAGCGAAGGTATCCAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | CACCTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGAACTGCCAGAGCTATAATTaGAAATATCAAGATCTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: HLQGFPIIPNWSCVFYTNCQSYN*KYQDLH Trigger: GTGGAGATCTTGATATTTTCAATTATAGCTCTGGCA...GTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | GGTAAGGTGAAGAGTTCCCTTTTTCTACTTCCTCATTGTCACTTGCCATTTTCTGATTTCCAGGTTCTCTaGGTGGCATGGGACAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: GKVKSSLFLLPHCHLPFSDFQVL*VAWDSI Trigger: GATGCTGTCCCATGCCACTCAGAGAACCTGGAAATC...AGAAAATGGCAAGTGACAATGAGGAAGTAGAAAAAGGGAACTCTTCACCTTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | CTATTTGATTATTTTTGGCACTTCTCATTGTGGACGCTCTTTTGTTGTGTAGAGTCCAGGTTCTCTGAGTaGCATGGGACAGCATCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LFDYFWHFSLWTLFCCVESRFSE*HGTASG Trigger: GCCAGATGCTGTCCCATGCCACTCAGAGAACCTGGA...CTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | TTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATGGGTTAAGGCAGCTGTaGAGGAAGCCAAGAATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: FIICKYTVAVFRHSRRGHGLRQL*RKPRIS Trigger: GGAGATTCTTGGCTTCCTCCACAGCTGCCTTAACCC...ATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | TTGTCCTCTATCCAATGGATGATTGTGAGCATCCACTTCTGTATTTTCCAGGCAACCAAGTGTCTCTTCTaGATCAGTGTACTTGTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LSSIQWMIVSIHFCIFQATKCLF*ISVLVA Trigger: TGCCACAAGTACACTGATCCAGAAGAGACACTTGGT...TGCCTGGAAAATACAGAAGTGGATGCTCACAATCATCCATTGGATAGAGGACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | AATTGTAACGTGTGCTTCTTAGAAAAGAGTGTTTGGGGTCTAGTGTTAGGATGGCCACAGCATAACTGTTaGTTTCCAGGTTCTCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: NCNVCFLEKSVWGLVLGWPQHNC*FPGSLS Trigger: ACTCAGAGAACCTGGAAATCAACAGTTATGCTGTGG...CCATCCTAACACTAGACCCCAAACACTCTTTTCTAAGAAGCACACGTTACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR GCA 90 bp | AATTGTAACGTGTGCTTCTTAGAAAAGAGTGTTTGGGGTCTAGTGTTAGGATGGTCCATTTACTTTAGATaGAGCCCAGACAGGCAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NCNVCFLEKSVWGLVLGWSIYFR*SPDRQG Trigger: ACCTTGCCTGTCTGGGCTGCATCTAAAGTAAATGGA...CCATCCTAACACTAGACCCCAAACACTCTTTTCTAAGAAGCACACGTTACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR GCA 90 bp | TGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTACCCATTCATCTGTTCCATTTACTTTAGATaGAGCCCAGACAGGCAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: WTLFCCVETPCLTYPFICSIYFR*SPDRQG Trigger: ACCTTGCCTGTCTGGGCTGCATCTAAAGTAAATGGA...ACAGATGAATGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CCA 90 bp | TGGACGCTCTTTTGTTGTGTAGAGACACCTTGTTTAACTTACCCATTCATCTGTACCAAGTGTCTCTTCTaGATCAGTGTACTTGTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: WTLFCCVETPCLTYPFICTKCLF*ISVLVA Trigger: TGCCACAAGTACACTGATCCAGAAGAGACACTTGGT...ACAGATGAATGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR TCA 90 bp | CTATTTGATTATTTTTGGCACTTCTCATTGTGGACGCTCTTTTGTTGTGTAGAGAACCTCCTTCACGTATaGGAATATCTTGCACAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: LFDYFWHFSLWTLFCCVENLLHV*EYLAQG Trigger: ACCCTGTGCAAGATATTCTCATACGTGAAGGAGGTT...CTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| 3UTR CAA 72 bp | TGTAGAGACACCTTGTTTAACTTACCCATTCATCTGTaGGCCATCATTTTCATGATGAATAATGCTGTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CRDTLFNLPIHL*AIIFMMNNAVV Trigger: CACAACAGCATTATTCATCATGAAAATGATGGCCAACAGATGAATGGGTAAGTTAAACAAGGTGTCTCTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| 3UTR CAA 72 bp | TTATTTTTGGCACTTCTCATTGTGGACGCTCTTTTGTaGTGTAGAGACACCTTGTTTAACTTACCCATTCAT | + |
|
Preference number: 4 (lower is better) Translates to: LFLALLIVDALL*CRDTLFNLPIH Trigger: ATGAATGGGTAAGTTAAACAAGGTGTCTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | ACTGATGTTCCTCCTCTGGGGCTTCAGACCCCTTTAGCTCCTTGGATACCTTCGGTAGCATTCAAGGCCTaGTCAATGTCATCGCGGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TDVPPLGLQTPLAPWIPSVAFKA*SMSSRR Trigger: GCGCCGCGATGACATTGACAAGGCCTTGAATGCTAC...CGAAGGTATCCAAGGAGCTAAAGGGGTCTGAAGCCCCAGAGGAGGAACATCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | CTTCAGGGCTTTCCCATCATCCCTAACTGGAGCTGTGTCTTCTACACGAACTCCGAGCAGGTGCTCCGGTaGTATAAGATGACCAGCATC | + |
|
Preference number: 5 (lower is better) Translates to: LQGFPIIPNWSCVFYTNSEQVLR*YKMTSI Trigger: GATGCTGGTCATCTTATACAACCGGAGCACCTGCTC...GGAGTTCGTGTAGAAGACACAGCTCCAGTTAGGGATGATGGGAAAGCCCTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | TTGCTGGGATTTGAACTTCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCATCTGGATCAGTGTACTaGTGGCATGTACAATGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: LLGFELRTFGRAVGCSYPSGSVY*WHVQWP Trigger: TGGCCATTGTACATGCCACAAGTACACTGATCCAGA...TGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | GACCTCTTTCTCCCTGTAATTGTAGAGGAGGGGCTGCATCAATTCAAATACCACGAGCAGGTGCTCCGGTaGTATAAGATGACCAGCATC | + |
|
Preference number: 5 (lower is better) Translates to: DLFLPVIVEEGLHQFKYHEQVLR*YKMTSI Trigger: GATGCTGGTCATCTTATACAACCGGAGCACCTGCTC...GTGGTATTTGAATTGATGCAGCCCCTCCTCTACAATTACAGGGAGAAAGAGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS TCA 90 bp | GACGTATATTACAACCACAGCATAACTGTTGATTTCCAGGTTCTCTaGGTGGCATGGGACAGCATCTGGCAGAATAGAGGGCATGCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: DVYYNHSITVDFQVL*VAWDSIWQNRGHAR Trigger: TCTGGCATGCCCTCTATTCTGCCAGATGCTGTCCCATGCCACTCAGAGAACCTGGAAATCAACAGTTATGCTGTGGTTGTAATATACGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS TCA 90 bp | TCAGCAGAGTCACCAGGACGTATATTACAACCACAGCATAACTGTTaGTTTCCAGGTTCTCTGAGTGGCATGGGACAGCATCTGGCAGAA | + |
|
Preference number: 5 (lower is better) Translates to: SAESPGRILQPQHNC*FPGSLSGMGQHLAE Trigger: TTCTGCCAGATGCTGTCCCATGCCACTCAGAGAACCTGGAAATCAACAGTTATGCTGTGGTTGTAATATACGTCCTGGTGACTCTGCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | CCCACCCTTCCTCACCCAGCCTCCAGTCAACACTATTTGATTATTTTTGGCACTGCTATGCACACAAACTaGACCAAGTGTCTCTTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PTLPHPASSQHYLIIFGTAMHTN*TKCLFW Trigger: CCAGAAGAGACACTTGGTCAAGTTTGTGTGCATAGC...AGTGCCAAAAATAATCAAATAGTGTTGACTGGAGGCTGGGTGAGGAAGGGTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS TCA 90 bp | GGGCCAGAATTACTGATAGTAACCACATGGCTATGCACACAAACTTaGCCAAGTGTCTCTTCTGGATCAGTGTACTTGTGGCATGTACAA | + |
|
Preference number: 5 (lower is better) Translates to: GPELLIVTTWLCTQT*PSVSSGSVYLWHVQ Trigger: TTGTACATGCCACAAGTACACTGATCCAGAAGAGACACTTGGTCAAGTTTGTGTGCATAGCCATGTGGTTACTATCAGTAATTCTGGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | TCGTCTACTGGTAAGGTGAAGAGTTCCCTTTTTCTACTTCCTCATTGTCACTTGTCTGGATCAGTGTACTaGTGGCATGTACAATGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SSTGKVKSSLFLLPHCHLSGSVY*WHVQWP Trigger: TGGCCATTGTACATGCCACAAGTACACTGATCCAGA...CAAGTGACAATGAGGAAGTAGAAAAAGGGAACTCTTCACCTTACCAGTAGACGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS-3UTR CAA 90 bp | CTATTTGATTATTTTTGGCACTTCTCATTGTGGACGCTCTTTTGTTGTGTAGAGGTAGCATTCAAGGCCTaGTCAATGTCATCGCGGCGC | + |
|
Preference number: 5 (lower is better) Translates to: LFDYFWHFSLWTLFCCVEVAFKA*SMSSRR Trigger: GCGCCGCGATGACATTGACAAGGCCTTGAATGCTAC...CTCTACACAACAAAAGAGCGTCCACAATGAGAAGTGCCAAAAATAATCAAATAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS TCA 72 bp | TACAACCACAGCATAACTGTTGATTTCCAGGTTCTCTaGGTGGCATGGGACAGCATCTGGCAGAATAGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: YNHSITVDFQVL*VAWDSIWQNRG Trigger: CCCTCTATTCTGCCAGATGCTGTCCCATGCCACTCAGAGAACCTGGAAATCAACAGTTATGCTGTGGTTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS TCA 72 bp | TCACCAGGACGTATATTACAACCACAGCATAACTGTTaGTTTCCAGGTTCTCTGAGTGGCATGGGACAGCAT | + |
|
Preference number: 6 (lower is better) Translates to: SPGRILQPQHNC*FPGSLSGMGQH Trigger: ATGCTGTCCCATGCCACTCAGAGAACCTGGAAATCAACAGTTATGCTGTGGTTGTAATATACGTCCTGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||
| CDS TCA 72 bp | TTACTGATAGTAACCACATGGCTATGCACACAAACTTaGCCAAGTGTCTCTTCTGGATCAGTGTACTTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: LLIVTTWLCTQT*PSVSSGSVYLW Trigger: CCACAAGTACACTGATCCAGAAGAGACACTTGGTCAAGTTTGTGTGCATAGCCATGTGGTTACTATCAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027372.8 ENSMUST00000106899.4 |
||