Pregenerated sensors for CXCR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048480

Ensembl transcript IDs: ENSMUST00000053389.5, ENSMUST00000190313.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGTGGCTTCACCCAGGACTTCATAGCAGACTGTACCAGAACGGAATaGTTTATATGCCTGGCGGAAGATAGCAAAAGGCAGAGACAGAAT	+
Preference number: 5 (lower is better) Translates to: CGFTQDFIADCTRTE*FICLAEDSKRQRQN Trigger: ATTCTGTCTCTGCCTTTTGCTATCTTCCGCCAGGCATATAAACCATTCCGTTCTGGTACAGTCTGCTATGAAGTCCTGGGTGAAGCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053389.5 ENSMUST00000190313.2
CDS CCA 72 bp	ACCCAGGACTTCATAGCAGACTGTACCAGAACGGAATaGTTTATATGCCTGGCGGAAGATAGCAAAAGGCAG	+
Preference number: 6 (lower is better) Translates to: TQDFIADCTRTE*FICLAEDSKRQ Trigger: CTGCCTTTTGCTATCTTCCGCCAGGCATATAAACCATTCCGTTCTGGTACAGTCTGCTATGAAGTCCTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053389.5 ENSMUST00000190313.2
CDS CAA 72 bp	ACCTCCTTGCGAACCAGGCCATGGTTAGCAAGGATCTaGAGGAATTCATGGCGAAAATTTTGGCCAACGAAG	+
Preference number: 6 (lower is better) Translates to: TSLRTRPWLARI*RNSWRKFWPTK Trigger: CTTCGTTGGCCAAAATTTTCGCCATGAATTCCTCAAGATCCTTGCTAACCATGGCCTGGTTCGCAAGGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053389.5 ENSMUST00000190313.2
CDS CAA 90 bp	GAAAAGCCCAGGATCTCAGTAATATACAGGGCCTGGTCAATGTCATaGCGGCGTTCGCAAGTATCTTCAATCAAGTGGGCTCCTAAGAGA	+
Preference number: 6 (lower is better) Translates to: EKPRISVIYRAWSMS*RRSQVSSIKWAPKR Trigger: TCTCTTAGGAGCCCACTTGATTGAAGATACTTGCGAACGCCGCAATGACATTGACCAGGCCCTGTATATTACTGAGATCCTGGGCTTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053389.5 ENSMUST00000190313.2
CDS CAA 72 bp	AGGATCTCAGTAATATACAGGGCCTGGTCAATGTCATaGCGGCGTTCGCAAGTATCTTCAATCAAGTGGGCT	+
Preference number: 6 (lower is better) Translates to: RISVIYRAWSMS*RRSQVSSIKWA Trigger: AGCCCACTTGATTGAAGATACTTGCGAACGCCGCAATGACATTGACCAGGCCCTGTATATTACTGAGATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053389.5 ENSMUST00000190313.2
CDS GCA 72 bp	TTCATAGCAGACTGTACCAGAACGGAATGGTTTATATaGCTGGCGGAAGATAGCAAAAGGCAGAGACAGAAT	+
Preference number: 6 (lower is better) Translates to: FIADCTRTEWFI*LAEDSKRQRQN Trigger: ATTCTGTCTCTGCCTTTTGCTATCTTCCGCCAGGCATATAAACCATTCCGTTCTGGTACAGTCTGCTATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053389.5 ENSMUST00000190313.2

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