Pregenerated sensors for CXCL9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029417Ensembl transcript IDs: ENSMUST00000113093.5
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGAGTCACAGGTGGCCACAAGGCTCACGCACACGTGGGGGTGGGTaGTGGGAATGGAACTCTGGCTCCCTCTCCAGCCCTGATCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: WSHRWPQGSRTRGGG*WEWNSGSLSSPDLS Trigger: GGAAAGATCAGGGCTGGAGAGGGAGCCAGAGTTCCATTCCCAGCACCCACCCCCACGTGTGCGTGAGCCTTGTGGCCACCTGTGACTCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | GAGGCCAGAAGAGAGAAATGGGTTCCCTGGAGCTGGAGTCACAGGTaGCCACAAGGCTCACGCACACGTGGGGGTGGGTGCTGGGAATGG | + |
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Preference number: 1 (lower is better) Translates to: EARREKWVPWSWSHR*PQGSRTRGGGCWEW Trigger: CCATTCCCAGCACCCACCCCCACGTGTGCGTGAGCCTTGTGGCCACCTGTGACTCCAGCTCCAGGGAACCCATTTCTCTCTTCTGGCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | GCAATGCTTGCAGAGGCCAGAAGAGAGAAATGGGTTCCCTGGAGCTaGAGTCACAGGTGGCCACAAGGCTCACGCACACGTGGGGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: AMLAEARREKWVPWS*SHRWPQGSRTRGGG Trigger: CCCACCCCCACGTGTGCGTGAGCCTTGTGGCCACCTGTGACTCCAGCTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | AGGTGGCCACAAGGCTCACGCACACGTGGGGGTGGGTGCTGGGAATaGAACTCTGGCTCCCTCTCCAGCCCTGATCTTTCCATTTCACCA | + |
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Preference number: 1 (lower is better) Translates to: RWPQGSRTRGGGCWE*NSGSLSSPDLSISP Trigger: TGGTGAAATGGAAAGATCAGGGCTGGAGAGGGAGCCAGAGTTCCATTCCCAGCACCCACCCCCACGTGTGCGTGAGCCTTGTGGCCACCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | ACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAGAAATGGGTTCCCTaGAGCTGGAGTCACAGGTGGCCACAAGGCTCACGCACACGTGGG | + |
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Preference number: 1 (lower is better) Translates to: TCAMLAEARREKWVP*SWSHRWPQGSRTRG Trigger: CCCACGTGTGCGTGAGCCTTGTGGCCACCTGTGACTCCAGCTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | CCTGTGTACACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAGAAATaGGTTCCCTGGAGCTGGAGTCACAGGTGGCCACAAGGCTCACGC | + |
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Preference number: 1 (lower is better) Translates to: PVYTCAMLAEARREK*VPWSWSHRWPQGSR Trigger: GCGTGAGCCTTGTGGCCACCTGTGACTCCAGCTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR TCA 90 bp | TGGGGGTGGGTGCTGGGAATGGAACTCTGGCTCCCTCTCCAGCCCTaGTCTTTCCATTTCACCACTCCTAGCCTGATGTGGCAATCCATA | + |
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Preference number: 1 (lower is better) Translates to: WGWVLGMELWLPLQP*SFHFTTPSLMWQSI Trigger: TATGGATTGCCACATCAGGCTAGGAGTGGTGAAATGGAAAGATCAGGGCTGGAGAGGGAGCCAGAGTTCCATTCCCAGCACCCACCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR TCA 90 bp | CTATCTAGCTCACCAGCAAACAGACAGGCCTGGGATTTGGTGACGTaGGCCTCAGAAGTCTTCGGAGGCTGCCAAATGTGTGGCTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: LSSSPANRQAWDLVT*ASEVFGGCQMCGSG Trigger: TCCAGAGCCACACATTTGGCAGCCTCCGAAGACTTCTGAGGCTCACGTCACCAAATCCCAGGCCTGTCTGTTTGCTGGTGAGCTAGATAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR TCA 90 bp | GAGGTCTATCTAGCTCACCAGCAAACAGACAGGCCTGGGATTTGGTaGCGTGAGCCTCAGAAGTCTTCGGAGGCTGCCAAATGTGTGGCT | + |
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Preference number: 1 (lower is better) Translates to: EVYLAHQQTDRPGIW*REPQKSSEAAKCVA Trigger: AGCCACACATTTGGCAGCCTCCGAAGACTTCTGAGGCTCACGTCACCAAATCCCAGGCCTGTCTGTTTGCTGGTGAGCTAGATAGACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | CCGAAGGGAGGTGGACAACGTTTTGACTGTGCAATGTTGTTTGGATaGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCA | + |
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Preference number: 1 (lower is better) Translates to: PKGGGQRFDCAMLFG*ESHQQHKNHLHAAP Trigger: TGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCAAACAACATTGCACAGTCAAAACGTTGTCCACCTCCCTTCGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR GCA 90 bp | CGTCTGAGATTATGGGTGTATGTCATGGGGGCCTGTGTACACCTGTaGAATGCTTGCAGAGGCCAGAAGAGAGAAATGGGTTCCCTGGAG | + |
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Preference number: 1 (lower is better) Translates to: RLRLWVYVMGACVHL*NACRGQKREMGSLE Trigger: CTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGGCCCCCATGACATACACCCATAATCTCAGACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | AGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATaGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCC | + |
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Preference number: 1 (lower is better) Translates to: SPTSSTKTTCMQRQE*QYLRKSMLKTELLP Trigger: GGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR TCA 90 bp | GCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATGGCAGTATTTaGGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGAGACATTC | + |
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Preference number: 1 (lower is better) Translates to: AAQKPPACSARNGSI*EKACSRRNFCPETF Trigger: GAATGTCTCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 90 bp | TCCATACAATCATACACTGGGATTTCTGCAATGAGGGAGGGAAGGTaGCAAGGAAATTCATATTCACCTAAGATAAACTTGCTAAAGGAT | + |
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Preference number: 1 (lower is better) Translates to: SIQSYTGISAMREGR*QGNSYSPKINLLKD Trigger: ATCCTTTAGCAAGTTTATCTTAGGTGAATATGAATTTCCTTGCCACCTTCCCTCCCTCATTGCAGAAATCCCAGTGTATGATTGTATGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | TGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATACGCACACGTGGGGGTaGGTGCTGGGAATGGAACTC | + |
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Preference number: 2 (lower is better) Translates to: WMGVPPAAQKPPACSARNTHTWG*VLGMEL Trigger: GAGTTCCATTCCCAGCACCCACCCCCACGTGTGCGT...ATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 90 bp | ATTATGGGTGTATGTCATGGGGGCCTGTGTACACCTGTGCAATGCTaGCAGAGGCCAGAAGAGAGAAATGGGTTCCCTGGAGCTGGAGTC | + |
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Preference number: 2 (lower is better) Translates to: IMGVCHGGLCTPVQC*QRPEERNGFPGAGV Trigger: GACTCCAGCTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGGCCCCCATGACATACACCCATAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR TCA 90 bp | TGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATTCACCACTCCTAGCCTaGTGTGGCAATCCATACAAT | + |
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Preference number: 2 (lower is better) Translates to: WMGVPPAAQKPPACSARNSPLLA*CGNPYN Trigger: ATTGTATGGATTGCCACATCAGGCTAGGAGTGGTGA...ATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGAGCTGGAGTCACAGGTaGCCACAAGGCTCACGCACA | + |
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Preference number: 2 (lower is better) Translates to: QRQEWQYLRKSMLKTELLSWSHR*PQGSRT Trigger: TGTGCGTGAGCCTTGTGGCCACCTGTGACTCCAGCT...CAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR TCA 90 bp | GGTGTAGTAGCACACACCTTTAACCCCAGCATTCAGGAGGCAGTAGAATACAGAAGGCCTGGGATTTGGTaGCGTGAGCCTCAGAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: GVVAHTFNPSIQEAVEYRRPGIW*REPQKS Trigger: AGACTTCTGAGGCTCACGTCACCAAATCCCAGGCCT...TCTGTATTCTACTGCCTCCTGAATGCTGGGGTTAAAGGTGTGTGCTACTACACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | GGTGTAGTAGCACACACCTTTAACCCCAGCATTCAGGAGGCAGTAGAATACAGAGAAGGACCTGGTCCCTaGAACACCAAGTGTTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: GVVAHTFNPSIQEAVEYREGPGP*NTKCSA Trigger: GGCAGAACACTTGGTGTTGCAGGGACCAGGTCCTTC...TCTGTATTCTACTGCCTCCTGAATGCTGGGGTTAAAGGTGTGTGCTACTACACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGATGGGTTCCCTGGAGCTaGAGTCACAGGTGGCCACAA | + |
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Preference number: 2 (lower is better) Translates to: QEWQYLRKSMLKTELLPRWVPWS*SHRWPQ Trigger: TTGTGGCCACCTGTGACTCCAGCTCCAGGGAACCCA...TCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 90 bp | AATTACCGAAGGGAGGTGGACAACGTTTTGACTGTGCAATGTTGTTaGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAG | + |
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Preference number: 2 (lower is better) Translates to: NYRREVDNVLTVQCC*DGSPTSSTKTTCMQ Trigger: CTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCAAACAACATTGCACAGTCAAAACGTTGTCCACCTCCCTTCGGTAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR TCA 90 bp | TGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATTATCCGCAAATGTCTTaGACATGTGATTCCTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: WMGVPPAAQKPPACSARNYPQMS*TCDSCL Trigger: CAAACAGGAATCACATGTTCAAGACATTTGCGGATA...ATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGAAGGCTGCCAAATGTGTaGCTCTGGAAGCCAGACAGC | + |
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Preference number: 2 (lower is better) Translates to: QEWQYLRKSMLKTELLPRRLPNV*LWKPDS Trigger: GCTGTCTGGCTTCCAGAGCCACACATTTGGCAGCCT...TCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 90 bp | AGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATGGCAGTATTaGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGAGACATT | + |
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Preference number: 2 (lower is better) Translates to: SSTKTTCMQRQEWQY*RKSMLKTELLPRDI Trigger: AATGTCTCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR TCA 90 bp | TGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATTTTTTATTTGCCGTCTaGGATTATGGGTGTATGTCA | + |
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Preference number: 2 (lower is better) Translates to: WMGVPPAAQKPPACSARNFLFAV*DYGCMS Trigger: TGACATACACCCATAATCTCAGACGGCAAATAAAAA...ATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCA 49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | CAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGTGTACACCTGTGCAATaGTTGCAGAGGCCAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: QRQEWQYLRKSMLKTELLCTPVQ*LQRPEE Trigger: CTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACA...CAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | GGTGTAGTAGCACACACCTTTAACCCCAGCATTCAGGAGGCAGTAGAATACAGACCAAATGTGTGGCTCTaGAAGCCAGACAGCTGTTGT | + |
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Preference number: 2 (lower is better) Translates to: GVVAHTFNPSIQEAVEYRPNVWL*KPDSCC Trigger: ACAACAGCTGTCTGGCTTCCAGAGCCACACATTTGG...TCTGTATTCTACTGCCTCCTGAATGCTGGGGTTAAAGGTGTGTGCTACTACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CTTTTCTATCTAATTCATCAGACCTCCTCTCTAGAGCAGTTTCCAGCTCCCACAGAGAAATGGGTTCCCTaGAGCTGGAGTCACAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: LFYLIHQTSSLEQFPAPTEKWVP*SWSHRW Trigger: CCACCTGTGACTCCAGCTCCAGGGAACCCATTTCTC...TGTGGGAGCTGGAAACTGCTCTAGAGAGGAGGTCTGATGAATTAGATAGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 90 bp | AGTAAATTACCGAAGGGAGGTGGACAACGTTTTGACTGTGCAATGTaGTTTGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: SKLPKGGGQRFDCAM*FGWESHQQHKNHLH Trigger: ATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCAAACAACATTGCACAGTCAAAACGTTGTCCACCTCCCTTCGGTAATTTACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | CTTTTCTATCTAATTCATCAGACCTCCTCTCTAGAGCAGTTTCCAGCTCCCACAGAAGTCTTCGGAGGCTaGCAAATGTGTGGCTCTGGA | + |
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Preference number: 2 (lower is better) Translates to: LFYLIHQTSSLEQFPAPTEVFGG*QMCGSG Trigger: TCCAGAGCCACACATTTGGCAGCCTCCGAAGACTTC...TGTGGGAGCTGGAAACTGCTCTAGAGAGGAGGTCTGATGAATTAGATAGAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | CAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGACACCTGTGCAATGCTTaGAGAGGCCAGAAGAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: QEWQYLRKSMLKTELLPRHLCNA*RGQKRE Trigger: TTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTG...TCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR TCA 90 bp | CAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCTGTGTAATTTTTCCTaGGCAGTCCCAAATATCCGC | + |
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Preference number: 2 (lower is better) Translates to: QRQEWQYLRKSMLKTELLLCNFS*AVPNIR Trigger: GCGGATATTTGGGACTGCTCAGGAAAAATTACACAG...CAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CAAGGTAAGGCTCTTTTTCACCCTGTCTGGCTCTGTGCGCTGAAGATGTCTGAAACAGCTGTTGTGCATTaGATAGCTATGAAGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: QGKALFHPVWLCALKMSETAVVH*IAMKER Trigger: CCTTTCCTTCATAGCTATCCAATGCACAACAGCTGT...TTCAGACATCTTCAGCGCACAGAGCCAGACAGGGTGAAAAAGAGCCTTACCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGATGAGGGAGGGAAGGTaGCAAGGAAATTCATATTCA | + |
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Preference number: 2 (lower is better) Translates to: QRQEWQYLRKSMLKTELLMREGR*QGNSYS Trigger: TGAATATGAATTTCCTTGCCACCTTCCCTCCCTCAT...CAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | ACTACGCTTTCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTAGGTGGGTGCTGGGAATaGAACTCTGGCTCCCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: TTLSRNSFRAHMLICFELGGCWE*NSGSLS Trigger: GGAGAGGGAGCCAGAGTTCCATTCCCAGCACCCACC...TAATTCAAAGCAAATTAGCATATGTGCTCTGAAGCTATTTCGTGAAAGCGTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | TTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGAGACATTCTTTTCTATGCCGTCTGAGATTATaGGTGTATGTCATGGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: FEKKHAQDGTSAQRHSFLCRLRL*VYVMGA Trigger: GGCCCCCATGACATACACCCATAATCTCAGACGGCA...TAGAAAAGAATGTCTCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR TCA 90 bp | ACTACGCTTTCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTATGGCAGCTCTTTTGTTaGCTCCTAGGGAGCTTGTCC | + |
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Preference number: 2 (lower is better) Translates to: TTLSRNSFRAHMLICFELWQLFC*LLGSLS Trigger: GGACAAGCTCCCTAGGAGTCAACAAAAGAGCTGCCA...TAATTCAAAGCAAATTAGCATATGTGCTCTGAAGCTATTTCGTGAAAGCGTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | GGTGTAGTAGCACACACCTTTAACCCCAGCATTCAGGAGGCAGTAGAATACAGAAATTGGTTAAGTTTTTaGACTGTTAGTGAAGGACCT | + |
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Preference number: 2 (lower is better) Translates to: GVVAHTFNPSIQEAVEYRNWLSF*TVSEGP Trigger: AGGTCCTTCACTAACAGTGCAAAAACTTAACCAATT...TCTGTATTCTACTGCCTCCTGAATGCTGGGGTTAAAGGTGTGTGCTACTACACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CCA 90 bp | CAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGCCCAGAGTGATGAAATTTTGTTaGCTGTGTAGAACACAGAGT | + |
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Preference number: 2 (lower is better) Translates to: QEWQYLRKSMLKTELLPRVMKFC*LCRTQS Trigger: ACTCTGTGTTCTACACAGCCAACAAAATTTCATCAC...TCTGGGCAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 90 bp | TCAGGAGGCAGTAGAATACAGATATGTATGAATTTGAGACCAGCCTaGTCTACTTTGAGAGTTTTAGGACAGCCAGATATAAAACTTTCT | + |
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Preference number: 2 (lower is better) Translates to: SGGSRIQICMNLRPA*STLRVLGQPDIKLS Trigger: AGAAAGTTTTATATCTGGCTGTCCTAAAACTCTCAAAGTAGACAAGGCTGGTCTCAAATTCATACATATCTGTATTCTACTGCCTCCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | ACTACGCTTTCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTAAAGGAAAGGGACACTTaGCCAGATCTGATGTTATCA | + |
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Preference number: 2 (lower is better) Translates to: TTLSRNSFRAHMLICFELKERDT*PDLMLS Trigger: TGATAACATCAGATCTGGGCAAGTGTCCCTTTCCTT...TAATTCAAAGCAAATTAGCATATGTGCTCTGAAGCTATTTCGTGAAAGCGTAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR GCA 90 bp | CACTCGCAGAATTTACTGCTTCCTGTAGCTCTTAATTCCTTTAAAAATATCTCTGTAAAGATTTTTATTTaGCGTCTGAGATTATGGGTG | + |
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Preference number: 2 (lower is better) Translates to: HSQNLLLPVALNSFKNISVKIFI*RLRLWV Trigger: CACCCATAATCTCAGACGGCAAATAAAAATCTTTAC...AGAGATATTTTTAAAGGAATTAAGAGCTACAGGAAGCAGTAAATTCTGCGAGTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR GCA 72 bp | AGGTGGCCACAAGGCTCACGCACACGTGGGGGTGGGTaGTGGGAATGGAACTCTGGCTCCCTCTCCAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: RWPQGSRTRGGG*WEWNSGSLSSP Trigger: AGGGCTGGAGAGGGAGCCAGAGTTCCATTCCCAGCACCCACCCCCACGTGTGCGTGAGCCTTGTGGCCACCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CAA 90 bp | TGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTGCATGCAGCGCCAGGAATCCCACACAGGCTAACTaGGCCCTGTCCACACTTCCA | + |
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Preference number: 3 (lower is better) Translates to: WMGVPPAAQKPPACSARNPTQAN*ALSTLP Trigger: TGGAAGTGTGGACAGGGCCAAGTTAGCCTGTGTGGG...ATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 72 bp | ACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAGAAATaGGTTCCCTGGAGCTGGAGTCACAGGTGGCCACAA | + |
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Preference number: 3 (lower is better) Translates to: TCAMLAEARREK*VPWSWSHRWPQ Trigger: TTGTGGCCACCTGTGACTCCAGCTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR GCA 72 bp | TATGTCATGGGGGCCTGTGTACACCTGTGCAATGCTTaGAGAGGCCAGAAGAGAGAAATGGGTTCCCTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: YVMGACVHLCNA*RGQKREMGSLE Trigger: CTCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGGCCCCCATGACATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 72 bp | GTGAGCCTCAGAAGTCTTCGGAGGCTGCCAAATGTGTaGCTCTGGAAGCCAGACAGCTGTTGTGCATTGGAT | + |
|
Preference number: 3 (lower is better) Translates to: VSLRSLRRLPNV*LWKPDSCCALD Trigger: ATCCAATGCACAACAGCTGTCTGGCTTCCAGAGCCACACATTTGGCAGCCTCCGAAGACTTCTGAGGCTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR GCA 72 bp | TTATGGGTGTATGTCATGGGGGCCTGTGTACACCTGTaGAATGCTTGCAGAGGCCAGAAGAGAGAAATGGGT | + |
|
Preference number: 3 (lower is better) Translates to: LWVYVMGACVHL*NACRGQKREMG Trigger: ACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGGCCCCCATGACATACACCCATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR GCA 72 bp | TTGGATGGGAGTCCCACCAGCAGCACAAAAACCACCTaGATGCAGCGCCAGGAATGGCAGTATTTGAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: LDGSPTSSTKTT*MQRQEWQYLRK Trigger: TTTTCTCAAATACTGCCATTCCTGGCGCTGCATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 72 bp | CTCAGAAGTCTTCGGAGGCTGCCAAATGTGTGGCTCTaGAAGCCAGACAGCTGTTGTGCATTGGATAGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: LRSLRRLPNVWL*KPDSCCALDSY Trigger: ATAGCTATCCAATGCACAACAGCTGTCTGGCTTCCAGAGCCACACATTTGGCAGCCTCCGAAGACTTCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CAA 90 bp | CCTGTGTACACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAGAAATGGGTTCCCGACAGCTGTTGTGCATaGGATAGCTATGAAGGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: PVYTCAMLAEARREKWVPDSCCA*DSYEGK Trigger: CTTTCCTTCATAGCTATCCAATGCACAACAGCTGTC...GGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 72 bp | ATGTGTGGCTCTGGAAGCCAGACAGCTGTTGTGCATTaGATAGCTATGAAGGAAAGGGACACTTGCCCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: MCGSGSQTAVVH*IAMKERDTCPD Trigger: ATCTGGGCAAGTGTCCCTTTCCTTCATAGCTATCCAATGCACAACAGCTGTCTGGCTTCCAGAGCCACACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 72 bp | GGTGGACAACGTTTTGACTGTGCAATGTTGTTTGGATaGGAGTCCCACCAGCAGCACAAAAACCACCTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: GGQRFDCAMLFG*ESHQQHKNHLH Trigger: ATGCAGGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCAAACAACATTGCACAGTCAAAACGTTGTCCACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CAA 90 bp | CAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGGAAGGAAAGGGACACTaGCCCAGATCTGATGTTATC | + |
|
Preference number: 3 (lower is better) Translates to: QRQEWQYLRKSMLKTELLEGKGH*PRSDVI Trigger: GATAACATCAGATCTGGGCAAGTGTCCCTTTCCTTC...CAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR GCA 72 bp | TTAAGTTTTTGCACTGTTAGTGAAGGACCTGGTCCCTaGAACACCAAGTGTTCTGCCACTAAGCTACAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: LSFCTVSEGPGP*NTKCSATKLQP Trigger: TGGCTGTAGCTTAGTGGCAGAACACTTGGTGTTGCAGGGACCAGGTCCTTCACTAACAGTGCAAAAACTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CAA 90 bp | CAAGGTAAGGCTCTTTTTCACCCTGTCTGGCTCTGTGCGCTGAAGATGTCTGAACAGATATGTATGAATTaGAGACCAGCCTTGTCTACT | + |
|
Preference number: 3 (lower is better) Translates to: QGKALFHPVWLCALKMSEQICMN*RPALST Trigger: AGTAGACAAGGCTGGTCTCAAATTCATACATATCTG...TTCAGACATCTTCAGCGCACAGAGCCAGACAGGGTGAAAAAGAGCCTTACCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
||
| 3UTR TCA 72 bp | TCCAGCCCTGATCTTTCCATTTCACCACTCCTAGCCTaGTGTGGCAATCCATACAATCATACACTGGGATTT | + |
|
Preference number: 3 (lower is better) Translates to: SSPDLSISPLLA*CGNPYNHTLGF Trigger: AAATCCCAGTGTATGATTGTATGGATTGCCACATCAGGCTAGGAGTGGTGAAATGGAAAGATCAGGGCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR TCA 72 bp | GGCAATCCATACAATCATACACTGGGATTTCTGCAATaGGGGAGGGAAGGTGGCAAGGAAATTCATATTCAC | + |
|
Preference number: 3 (lower is better) Translates to: GNPYNHTLGFLQ*GREGGKEIHIH Trigger: GTGAATATGAATTTCCTTGCCACCTTCCCTCCCTCATTGCAGAAATCCCAGTGTATGATTGTATGGATTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CCA 72 bp | ATCTCTGTAAAGATTTTTATTTGCCGTCTGAGATTATaGGTGTATGTCATGGGGGCCTGTGTACACCTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: ISVKIFICRLRL*VYVMGACVHLC Trigger: GCACAGGTGTACACAGGCCCCCATGACATACACCCATAATCTCAGACGGCAAATAAAAATCTTTACAGAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR TCA 72 bp | GTAAGGCTCTTTTTCACCCTGTCTGGCTCTGTGCGCTaGAGATGTCTGAAGATAATAAGAAAGCTAGATAAT | + |
|
Preference number: 3 (lower is better) Translates to: VRLFFTLSGSVR*RCLKIIRKLDN Trigger: ATTATCTAGCTTTCTTATTATCTTCAGACATCTTCAGCGCACAGAGCCAGACAGGGTGAAAAAGAGCCTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR-3UTR CAA 90 bp | ACTACGCTTTCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTATTTGACTGTGCAATGTaGTTTGGATGGGAGTCCCAC | + |
|
Preference number: 3 (lower is better) Translates to: TTLSRNSFRAHMLICFELFDCAM*FGWESH Trigger: GTGGGACTCCCATCCAAACAACATTGCACAGTCAAA...TAATTCAAAGCAAATTAGCATATGTGCTCTGAAGCTATTTCGTGAAAGCGTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | GTATGTCATGGGGGCCTGTGTACACCTGTGCAATGCTaGCAGAGGCCAGAAGAGAGAAATGGGTTCCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: VCHGGLCTPVQC*QRPEERNGFPG Trigger: TCCAGGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGGCCCCCATGACATAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
||
| CDS-3UTR TCA 90 bp | CAGCGCCAGGAATGGCAGTATTTGAGAAAAAGCATGCTCAAGACGGAACTTCTGTGCCTCGGCTGGTGCTaGTGCAGGAGCATCGTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QRQEWQYLRKSMLKTELLCLGWC*CRSIVH Trigger: ATGCACGATGCTCCTGCATCAGCACCAGCCGAGGCA...CAGAAGTTCCGTCTTGAGCATGCTTTTTCTCAAATACTGCCATTCCTGGCGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS-3UTR CCA 90 bp | CCTGTGTACACCTGTGCAATGCTTGCAGAGGCCAGAAGAGAGAAATGGGTTCCCGAACGACGACGACTTTaGGGTGTTTTGGGTTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PVYTCAMLAEARREKWVPERRRL*GVLGFL Trigger: CAGAAAACCCAAAACACCCCAAAGTCGTCGTCGTTC...GGGAACCCATTTCTCTCTTCTGGCCTCTGCAAGCATTGCACAGGTGTACACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | AGGGAGGTGGACAACGTTTTGACTGTGCAATGTTGTTaGGATGGGAGTCCCACCAGCAGCACAAAAACCACC | + |
|
Preference number: 4 (lower is better) Translates to: REVDNVLTVQCC*DGSPTSSTKTT Trigger: GGTGGTTTTTGTGCTGCTGGTGGGACTCCCATCCAAACAACATTGCACAGTCAAAACGTTGTCCACCTCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | CCGAAGGGAGGTGGACAACGTTTTGACTGTGCAATGTaGTTTGGATGGGAGTCCCACCAGCAGCACAAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: PKGGGQRFDCAM*FGWESHQQHKN Trigger: GTTTTTGTGCTGCTGGTGGGACTCCCATCCAAACAACATTGCACAGTCAAAACGTTGTCCACCTCCCTTCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS-3UTR TCA 90 bp | CTGCCAGGGAAGGCTTTTCAGTACAATCTAAAACCCATTAAGATTCAGGGTGCTACTGCTCCAGGAAGATaGTGCCCAAGAGGAAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: LPGKAFQYNLKPIKIQGATAPGR*CPRGKE Trigger: TTCTTTTCCTCTTGGGCATCATCTTCCTGGAGCAGT...AGCACCCTGAATCTTAATGGGTTTTAGATTGTACTGAAAAGCCTTCCCTGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | TGTTGTGCATTGGATAGCTATGAAGGAAAGGGACACTaGCCCAGATCTGATGTTATCACGACTAGGCTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: CCALDSYEGKGH*PRSDVITTRLK Trigger: CTTGAGCCTAGTCGTGATAACATCAGATCTGGGCAAGTGTCCCTTTCCTTCATAGCTATCCAATGCACAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS-3UTR TCA 90 bp | CACTCGCAGAATTTACTGCTTCCTGTAGCTCTTAATTCCTTTAAAAATATCTCTTTATGTAGTCTTCCTTaGACGACGACGACTTTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: HSQNLLLPVALNSFKNISLCSLP*TTTTLG Trigger: CCCCAAAGTCGTCGTCGTTCAAGGAAGACTACATAA...AGAGATATTTTTAAAGGAATTAAGAGCTACAGGAAGCAGTAAATTCTGCGAGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | AAGATAAACTTGCTAAAGGATTTGGCAGCTCTTTTGTaGACTCCTAGGGAGCTTGTCCTGATCAAGAATGAT | + |
|
Preference number: 4 (lower is better) Translates to: KINLLKDLAALL*TPRELVLIKND Trigger: ATCATTCTTGATCAGGACAAGCTCCCTAGGAGTCAACAAAAGAGCTGCCAAATCCTTTAGCAAGTTTATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS-3UTR CCA 90 bp | CACTCGCAGAATTTACTGCTTCCTGTAGCTCTTAATTCCTTTAAAAATATCTCTCAGTTTTGTTGCAATTaGGGCTTGGGGCAAACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: HSQNLLLPVALNSFKNISQFCCN*GLGQTV Trigger: AACAGTTTGCCCCAAGCCCCAATTGCAACAAAACTG...AGAGATATTTTTAAAGGAATTAAGAGCTACAGGAAGCAGTAAATTCTGCGAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | CATTCAGGAGGCAGTAGAATACAGATATGTATGAATTaGAGACCAGCCTTGTCTACTTTGAGAGTTTTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: HSGGSRIQICMN*RPALSTLRVLG Trigger: TCCTAAAACTCTCAAAGTAGACAAGGCTGGTCTCAAATTCATACATATCTGTATTCTACTGCCTCCTGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | AATTCATATTCACCTAAGATAAACTTGCTAAAGGATTaGGCAGCTCTTTTGTTGACTCCTAGGGAGCTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: NSYSPKINLLKD*AALLLTPRELV Trigger: GACAAGCTCCCTAGGAGTCAACAAAAGAGCTGCCAAATCCTTTAGCAAGTTTATCTTAGGTGAATATGAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | AGGTGGCAAGGAAATTCATATTCACCTAAGATAAACTaGCTAAAGGATTTGGCAGCTCTTTTGTTGACTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RWQGNSYSPKIN*LKDLAALLLTP Trigger: AGGAGTCAACAAAAGAGCTGCCAAATCCTTTAGCAAGTTTATCTTAGGTGAATATGAATTTCCTTGCCACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | ATCCAACATAACTATTTAGTAAAAATTACACAGGCTTaGGCTAGTCGTTATGCATACTACCCAGCTGTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: IQHNYLVKITQA*ASRYAYYPAVR Trigger: TCTGACAGCTGGGTAGTATGCATAACGACTAGCCAAAGCCTGTGTAATTTTTACTAAATAGTTATGTTGGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| 3UTR CAA 72 bp | AGTAGAATACAGATATGTATGAATTTGAGACCAGCCTaGTCTACTTTGAGAGTTTTAGGACAGCCAGATATA | + |
|
Preference number: 4 (lower is better) Translates to: SRIQICMNLRPA*STLRVLGQPDI Trigger: TATATCTGGCTGTCCTAAAACTCTCAAAGTAGACAAGGCTGGTCTCAAATTCATACATATCTGTATTCTACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS GCA 90 bp | GAGCATCGTGCATTCCTTATCACTAGGGTTCCTCGAACTCCACACTaGTCCAGGAAGATGATGCCCAAGAGGAAAAGAACAGCGGACTTC | + |
|
Preference number: 5 (lower is better) Translates to: EHRAFLITRVPRTPH*SRKMMPKRKRTADF Trigger: GAAGTCCGCTGTTCTTTTCCTCTTGGGCATCATCTTCCTGGAGCAGTGTGGAGTTCGAGGAACCCTAGTGATAAGGAATGCACGATGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS TCA 90 bp | TTCATCAGCTTCTTCACATTTGCCGAGTCCGGATCTAGGCAGGTTTaGTCTCCGTTCTTCAGTGTAGCAATGATTTCAGTTTTGTTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: FISFFTFAESGSRQV*SPFFSVAMISVLLQ Trigger: TTGCAACAAAACTGAAATCATTGCTACACTGAAGAACGGAGATCAAACCTGCCTAGATCCGGACTCGGCAAATGTGAAGAAGCTGATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS CCA 90 bp | GTTCTTCAGTGTAGCAATGATTTCAGTTTTGTTGCAATTGGGGCTTaGGGCAAACTGTTTGAGGTCTTTGAGGGATTTGTAGTGGATCGT | + |
|
Preference number: 5 (lower is better) Translates to: VLQCSNDFSFVAIGA*GKLFEVFEGFVVDR Trigger: ACGATCCACTACAAATCCCTCAAAGACCTCAAACAGTTTGCCCCAAGCCCCAATTGCAACAAAACTGAAATCATTGCTACACTGAAGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS-3UTR CAA 90 bp | ACTACGCTTTCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTACTTGGGGCAAACTGTTaGAGGTCTTTGAGGGATTTG | + |
|
Preference number: 5 (lower is better) Translates to: TTLSRNSFRAHMLICFELLGANC*RSLRDL Trigger: CAAATCCCTCAAAGACCTCAAACAGTTTGCCCCAAG...TAATTCAAAGCAAATTAGCATATGTGCTCTGAAGCTATTTCGTGAAAGCGTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS-3UTR CAA 90 bp | ACTACGCTTTCACGAAATAGCTTCAGAGCACATATGCTAATTTGCTTTGAATTAGCAATGATTTCAGTTTaGTTGCAATTGGGGCTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: TTLSRNSFRAHMLICFELAMISV*LQLGLG Trigger: CCCAAGCCCCAATTGCAACAAAACTGAAATCATTGC...TAATTCAAAGCAAATTAGCATATGTGCTCTGAAGCTATTTCGTGAAAGCGTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
||
| CDS GCA 72 bp | GCATTCCTTATCACTAGGGTTCCTCGAACTCCACACTaGTCCAGGAAGATGATGCCCAAGAGGAAAAGAACA | + |
|
Preference number: 6 (lower is better) Translates to: AFLITRVPRTPH*SRKMMPKRKRT Trigger: TGTTCTTTTCCTCTTGGGCATCATCTTCCTGGAGCAGTGTGGAGTTCGAGGAACCCTAGTGATAAGGAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
||
| CDS TCA 72 bp | TTCTTCACATTTGCCGAGTCCGGATCTAGGCAGGTTTaGTCTCCGTTCTTCAGTGTAGCAATGATTTCAGTT | + |
|
Preference number: 6 (lower is better) Translates to: FFTFAESGSRQV*SPFFSVAMISV Trigger: AACTGAAATCATTGCTACACTGAAGAACGGAGATCAAACCTGCCTAGATCCGGACTCGGCAAATGTGAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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| CDS CCA 72 bp | TGTAGCAATGATTTCAGTTTTGTTGCAATTGGGGCTTaGGGCAAACTGTTTGAGGTCTTTGAGGGATTTGTA | + |
|
Preference number: 6 (lower is better) Translates to: CSNDFSFVAIGA*GKLFEVFEGFV Trigger: TACAAATCCCTCAAAGACCTCAAACAGTTTGCCCCAAGCCCCAATTGCAACAAAACTGAAATCATTGCTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113093.5 |
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