Pregenerated sensors for CXCL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029371Ensembl transcript IDs: ENSMUST00000031318.6
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATTTTATGAGAGAGAGTATGACAGCATTGCCTTCTCATGAACATTACAAAGGAAATACACTTGTGAGATaGGCAGGAAGCTTCAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: HFMRESMTALPSHEHYKGNTLVR*AGSFRD Trigger: GTCCCTGAAGCTTCCTGCTCATCTCACAAGTGTATT...TCCTTTGTAATGTTCATGAGAAGGCAATGCTGTCATACTCTCTCTCATAAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| 3UTR-3UTR TCA 90 bp | CATTTTATGAGAGAGAGTATGACAGCATTGCCTTCTCATGAACATTACAAAGGACAATTTCCGATAGTGTaGCAGATAGGAAAGAATAGG | + |
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Preference number: 2 (lower is better) Translates to: HFMRESMTALPSHEHYKGQFPIV*QIGKNR Trigger: CCTATTCTTTCCTATCTGTCACACTATCGGAAATTG...TCCTTTGTAATGTTCATGAGAAGGCAATGCTGTCATACTCTCTCTCATAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| 3UTR-3UTR CCA 90 bp | CATTTTATGAGAGAGAGTATGACAGCATTGCCTTCTCATGAACATTACAAAGGAAAGCTTCAGGGACAATaGTTTCCCTTTTCTCATCAA | + |
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Preference number: 2 (lower is better) Translates to: HFMRESMTALPSHEHYKGKLQGQ*FPFSHQ Trigger: TTGATGAGAAAAGGGAAACCATTGTCCCTGAAGCTT...TCCTTTGTAATGTTCATGAGAAGGCAATGCTGTCATACTCTCTCTCATAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| 3UTR CCA 72 bp | CATCAAAGCAGGGAGTTCATAAAGAAAATCCGTGGGTaGAGAGAATCAGCCCTTTCTTCTTATCTTCACTGG | + |
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Preference number: 3 (lower is better) Translates to: HQSREFIKKIRG*RESALSSYLHW Trigger: CCAGTGAAGATAAGAAGAAAGGGCTGATTCTCTCCACCCACGGATTTTCTTTATGAACTCCCTGCTTTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| 3UTR GCA 72 bp | ATGACACAGCAGCTTTCTAAAACCATAAAAGTTATATaGCAGCCCAGGCTCAGACGTAAGAACACTCTTAAC | + |
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Preference number: 3 (lower is better) Translates to: MTQQLSKTIKVI*QPRLRRKNTLN Trigger: GTTAAGAGTGTTCTTACGTCTGAGCCTGGGCTGGCATATAACTTTTATGGTTTTAGAAAGCTGCTGTGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| 3UTR CCA 72 bp | TTCTCATCAAAGCAGGGAGTTCATAAAGAAAATCCGTaGGTGGAGAGAATCAGCCCTTTCTTCTTATCTTCA | + |
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Preference number: 3 (lower is better) Translates to: FSSKQGVHKENP*VERISPFFLSS Trigger: TGAAGATAAGAAGAAAGGGCTGATTCTCTCCACCCACGGATTTTCTTTATGAACTCCCTGCTTTGATGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS-3UTR GCA 90 bp | TCCGTGGGTGGAGAGAATCAGCCCTTTCTTCTTATCTTCACTGGGGTCAGAGTCAGGGCACTGTGGACCTaGAGGGATCACCTCCAAATT | + |
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Preference number: 4 (lower is better) Translates to: SVGGENQPFLLIFTGVRVRALWT*RDHLQI Trigger: AATTTGGAGGTGATCCCTGCAGGTCCACAGTGCCCT...GACTCTGACCCCAGTGAAGATAAGAAGAAAGGGCTGATTCTCTCCACCCACGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS-3UTR CCA 90 bp | AAAGAAAATCCGTGGGTGGAGAGAATCAGCCCTTTCTTCTTATCTTCACTGGGGCACCGTAGGGCACTGTaGACCTGCAGGGATCACCTC | + |
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Preference number: 4 (lower is better) Translates to: KENPWVERISPFFLSSLGHRRAL*TCRDHL Trigger: GAGGTGATCCCTGCAGGTCCACAGTGCCCTACGGTG...CCCCAGTGAAGATAAGAAGAAAGGGCTGATTCTCTCCACCCACGGATTTTCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS-3UTR TCA 90 bp | TATACATATTCCGGAGACAATGCAATAGTCACCTTCAGTTCAAGACATTTTGAACGTTGCGGCTATGACTaGGGAAGGGGCAGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: YTYSGDNAIVTFSSRHFERCGYD*GRGSFS Trigger: GCTGAAGCTGCCCCTTCCTCAGTCATAGCCGCAACG...TTCAAAATGTCTTGAACTGAAGGTGACTATTGCATTGTCTCCGGAATATGTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS-3UTR TCA 90 bp | TATACATATTCCGGAGACAATGCAATAGTCACCTTCAGTTCAAGACATTTTGAAGCTCCGTTGCGGCTATaGCTGAGGAAGGGGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: YTYSGDNAIVTFSSRHFEAPLRL*LRKGQL Trigger: AAGCTGCCCCTTCCTCAGTCATAGCCGCAACGGAGC...TTCAAAATGTCTTGAACTGAAGGTGACTATTGCATTGTCTCCGGAATATGTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS-3UTR CCA 90 bp | AAAGAAAATCCGTGGGTGGAGAGAATCAGCCCTTTCTTCTTATCTTCACTGGGGAGACAGACCTCCTTCTaGTTTTTCAGTTTAGCTATG | + |
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Preference number: 4 (lower is better) Translates to: KENPWVERISPFFLSSLGRQTSF*FFSLAM Trigger: CATAGCTAAACTGAAAAACCAGAAGGAGGTCTGTCT...CCCCAGTGAAGATAAGAAGAAAGGGCTGATTCTCTCCACCCACGGATTTTCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS GCA 90 bp | TCCGTTGCGGCTATGACTGAGGAAGGGGCAGCTTCAGCTAGATGCTaGGGCAGCGTGAACAGCAACAGAAATGCCAGCGGCGCCATCCGC | + |
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Preference number: 5 (lower is better) Translates to: SVAAMTEEGAASARC*GSVNSNRNASGAIR Trigger: GCGGATGGCGCCGCTGGCATTTCTGTTGCTGTTCACGCTGCCGCAGCATCTAGCTGAAGCTGCCCCTTCCTCAGTCATAGCCGCAACGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS GCA 90 bp | AGCTCCGTTGCGGCTATGACTGAGGAAGGGGCAGCTTCAGCTAGATaGTGCGGCAGCGTGAACAGCAACAGAAATGCCAGCGGCGCCATC | + |
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Preference number: 5 (lower is better) Translates to: SSVAAMTEEGAASAR*CGSVNSNRNASGAI Trigger: GATGGCGCCGCTGGCATTTCTGTTGCTGTTCACGCTGCCGCAGCATCTAGCTGAAGCTGCCCCTTCCTCAGTCATAGCCGCAACGGAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS CCA 90 bp | CTTCTGGTTTTTCAGTTTAGCTATGACTTCCACCGTAGGGCACTGTaGACCTGCAGGGATCACCTCCAAATTAGCGATCAATTTGGGATT | + |
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Preference number: 5 (lower is better) Translates to: LLVFQFSYDFHRRAL*TCRDHLQISDQFGI Trigger: AATCCCAAATTGATCGCTAATTTGGAGGTGATCCCTGCAGGTCCACAGTGCCCTACGGTGGAAGTCATAGCTAAACTGAAAAACCAGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS-3UTR CAA 90 bp | TCCGTGGGTGGAGAGAATCAGCCCTTTCTTCTTATCTTCACTGGGGTCAGAGTCCGCTTAGCTTTCTTTTaGTCACTGCCCAATATTTTC | + |
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Preference number: 5 (lower is better) Translates to: SVGGENQPFLLIFTGVRVRLAFF*SLPNIF Trigger: GAAAATATTGGGCAGTGACAAAAAGAAAGCTAAGCG...GACTCTGACCCCAGTGAAGATAAGAAGAAAGGGCTGATTCTCTCCACCCACGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS CCA 90 bp | ATTTTCTTTATCACAGGAGCTTCTGGATCCAGACAGACCTCCTTCTaGTTTTTCAGTTTAGCTATGACTTCCACCGTAGGGCACTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: IFFITGASGSRQTSF*FFSLAMTSTVGHCG Trigger: TCCACAGTGCCCTACGGTGGAAGTCATAGCTAAACTGAAAAACCAGAAGGAGGTCTGTCTGGATCCAGAAGCTCCTGTGATAAAGAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS CCA 72 bp | CAGCAACAGAAATGCCAGCGGCGCCATCCGCATGAATaGCGAGATGGAACCGCTGGGGATGCGGGCGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: QQQKCQRRHPHE*RDGTAGDAGGA Trigger: AGCTCCGCCCGCATCCCCAGCGGTTCCATCTCGCCATTCATGCGGATGGCGCCGCTGGCATTTCTGTTGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS TCA 72 bp | AGGAAGGGGCAGCTTCAGCTAGATGCTGCGGCAGCGTaGACAGCAACAGAAATGCCAGCGGCGCCATCCGCA | + |
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Preference number: 6 (lower is better) Translates to: RKGQLQLDAAAA*TATEMPAAPSA Trigger: TGCGGATGGCGCCGCTGGCATTTCTGTTGCTGTTCACGCTGCCGCAGCATCTAGCTGAAGCTGCCCCTTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS GCA 72 bp | GCTATGACTGAGGAAGGGGCAGCTTCAGCTAGATGCTaGGGCAGCGTGAACAGCAACAGAAATGCCAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: AMTEEGAASARC*GSVNSNRNASG Trigger: GCCGCTGGCATTTCTGTTGCTGTTCACGCTGCCGCAGCATCTAGCTGAAGCTGCCCCTTCCTCAGTCATAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS GCA 72 bp | GCGGCTATGACTGAGGAAGGGGCAGCTTCAGCTAGATaGTGCGGCAGCGTGAACAGCAACAGAAATGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: AAMTEEGAASAR*CGSVNSNRNAS Trigger: GCTGGCATTTCTGTTGCTGTTCACGCTGCCGCAGCATCTAGCTGAAGCTGCCCCTTCCTCAGTCATAGCCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS TCA 72 bp | CGGTTAAGCAAACACAACGCAGCTCCGTTGCGGCTATaGCTGAGGAAGGGGCAGCTTCAGCTAGATGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: RLSKHNAAPLRL*LRKGQLQLDAA Trigger: CGCAGCATCTAGCTGAAGCTGCCCCTTCCTCAGTCATAGCCGCAACGGAGCTGCGTTGTGTTTGCTTAACCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS CCA 72 bp | TTTCAGTTTAGCTATGACTTCCACCGTAGGGCACTGTaGACCTGCAGGGATCACCTCCAAATTAGCGATCAA | + |
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Preference number: 6 (lower is better) Translates to: FQFSYDFHRRAL*TCRDHLQISDQ Trigger: TTGATCGCTAATTTGGAGGTGATCCCTGCAGGTCCACAGTGCCCTACGGTGGAAGTCATAGCTAAACTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS CCA 72 bp | ATCACAGGAGCTTCTGGATCCAGACAGACCTCCTTCTaGTTTTTCAGTTTAGCTATGACTTCCACCGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: ITGASGSRQTSF*FFSLAMTSTVG Trigger: CCCTACGGTGGAAGTCATAGCTAAACTGAAAAACCAGAAGGAGGTCTGTCTGGATCCAGAAGCTCCTGTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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| CDS CAA 90 bp | GGGCACTGTGGACCTGCAGGGATCACCTCCAAATTAGCGATCAATTaGGGATTAATTTTTGGAGTTACGGTTAAGCAAACACAACGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GHCGPAGITSKLAIN*GLIFGVTVKQTQRS Trigger: GCTGCGTTGTGTTTGCTTAACCGTAACTCCAAAAATTAATCCCAAATTGATCGCTAATTTGGAGGTGATCCCTGCAGGTCCACAGTGCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031318.6 |
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