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Pregenerated sensors for CXCL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029379

Ensembl transcript IDs: ENSMUST00000031326.10

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CACCGTTGGGATGGATCGCTTTTCTCTGATTTAGAATaGAGGTCCTTCATCATGGTGAGGGGCTTCCTCCTT +
Preference number: 3 (lower is better)
Translates to: HRWDGSLFSDLE*RSFIMVRGFLL
Trigger: AAGGAGGAAGCCCCTCACCATGATGAAGGACCTGCATTCTAAATCAGAGAAAAGCGATCCATCCCAACGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS-3UTR TCA 90 bp TCTGATTTAGAATGCAGGTCCTTCATCATGGTGAGGGGCTTCCTCCTTTCCCGGTTGAGGCAAACTTCTTaGCCATCCTTGAGAGTGGCT +
Preference number: 4 (lower is better)
Translates to: SDLECRSFIMVRGFLLSRLRQTS*PSLRVA
Trigger: AGCCACTCTCAAGGATGGTCAAGAAGTTTGCCTCAA...CCGGGAAAGGAGGAAGCCCCTCACCATGATGAAGGACCTGCATTCTAAATCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS-3UTR TCA 90 bp GGATCGCTTTTCTCTGATTTAGAATGCAGGTCCTTCATCATGGTGAGGGGCTTCTTCTTGATGATTATCTaGAGCCTGGGGCCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GSLFSDLECRSFIMVRGFFLMII*SLGPWG
Trigger: CCCCCAAGGCCCCAGGCTTCAGATAATCATCAAGAA...GAAGCCCCTCACCATGATGAAGGACCTGCATTCTAAATCAGAGAAAAGCGATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS-3UTR CCA 90 bp TCTGATTTAGAATGCAGGTCCTTCATCATGGTGAGGGGCTTCCTCCTTTCCCGGCCGTCAAGCTCTGGATaGTCTCAAAATCAACCCTTG +
Preference number: 4 (lower is better)
Translates to: SDLECRSFIMVRGFLLSRPSSSG*SQNQPL
Trigger: CAAGGGTTGATTTTGAGACCATCCAGAGCTTGACGG...CCGGGAAAGGAGGAAGCCCCTCACCATGATGAAGGACCTGCATTCTAAATCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
3UTR CAA 72 bp TCTTCCTACACCGGCATGACCTTGTTTGTCTGTTTTTaGACTATCACAGCTGCCACCAAAATGGCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: SSYTGMTLFVCF*TITAATKMASQ
Trigger: TTGGCTGGCCATTTTGGTGGCAGCTGTGATAGTCAAAAAACAGACAAACAAGGTCATGCCGGTGTAGGAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS CAA 72 bp TCACCGTCAAGCTCTGGATGGTCTCAAAATCAACCCTaGGTAGGGTGTTCAGGCACTGACAGCGCAGCTCAC +
Preference number: 6 (lower is better)
Translates to: SPSSSGWSQNQP*VGCSGTDSAAH
Trigger: GTGAGCTGCGCTGTCAGTGCCTGAACACCCTACCAAGGGTTGATTTTGAGACCATCCAGAGCTTGACGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS CAA 72 bp CTGAAGCCTGGGGCCTTGGGGGTTGAGGCAAACTTCTaGACCATCCTTGAGAGTGGCTATGACTTCTGTCTG +
Preference number: 6 (lower is better)
Translates to: LKPGALGVEANF*TILESGYDFCL
Trigger: CAGACAGAAGTCATAGCCACTCTCAAGGATGGTCAAGAAGTTTGCCTCAACCCCCAAGGCCCCAGGCTTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS CAA 90 bp GCCGCTCTTCAGTATCTTCTTGATGATTATCTGAAGCCTGGGGCCTaGGGGGTTGAGGCAAACTTCTTGACCATCCTTGAGAGTGGCTAT +
Preference number: 6 (lower is better)
Translates to: AALQYLLDDYLKPGA*GVEANFLTILESGY
Trigger: ATAGCCACTCTCAAGGATGGTCAAGAAGTTTGCCTCAACCCCCAAGGCCCCAGGCTTCAGATAATCATCAAGAAGATACTGAAGAGCGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS TCA 72 bp GACTTGCCGCTCTTCAGTATCTTCTTGATGATTATCTaGAGCCTGGGGCCTTGGGGGTTGAGGCAAACTTCT +
Preference number: 6 (lower is better)
Translates to: DLPLFSIFLMII*SLGPWGLRQTS
Trigger: AGAAGTTTGCCTCAACCCCCAAGGCCCCAGGCTTCAGATAATCATCAAGAAGATACTGAAGAGCGGCAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10
CDS CAA 72 bp CAGTATCTTCTTGATGATTATCTGAAGCCTGGGGCCTaGGGGGTTGAGGCAAACTTCTTGACCATCCTTGAG +
Preference number: 6 (lower is better)
Translates to: QYLLDDYLKPGA*GVEANFLTILE
Trigger: CTCAAGGATGGTCAAGAAGTTTGCCTCAACCCCCAAGGCCCCAGGCTTCAGATAATCATCAAGAAGATACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031326.10