Pregenerated sensors for CXCL17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060188Ensembl transcript IDs: ENSMUST00000074040.4, ENSMUST00000200880.4
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGGCACAGTCATAGATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCGCCTTCAGAGAGCACTaGGGTGCTCTTGGTGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: GHSHRYTVRQCLQRALGCAFREH*GALGED Trigger: ATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGC...GCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTATCTATGACTGTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| 3UTR-3UTR GCA 90 bp | GGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGAAGGCATAAGACAAGATACACTGTGAGGCAGTaGCTTCAGAGAGCACTGGGG | + |
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Preference number: 2 (lower is better) Translates to: GGRGVLHSCRVNRRHKTRYTVRQ*LQRALG Trigger: CCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTA...TCTTGTCTTATGCCTTCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| 3UTR TCA 72 bp | GCAGCCGGCACTAGGGGCACAGTCATAGATACACTGTaGGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: AAGTRGTVIDTL*GSAFREHWGAL Trigger: AAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTATCTATGACTGTGCCCCTAGTGCCGGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | GGGCACAGTCATAGATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCAGGTGTTGGTCCCCGTaGCTTCTGGCGACCCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GHSHRYTVRQCLQRALGCRCWSP*LLATPG Trigger: CCCAGGGGTCGCCAGAAGCCACGGGGACCAACACCT...GCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTATCTATGACTGTGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR TCA 90 bp | GAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTTGGTGAGGATGGGGGTGGGGCCAGGTGACATCGTTTaGGAAATTGCTGGCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: EAVPSESTGVLLVRMGVGPGDIV*EIAGRL Trigger: GAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGG...CCCCACCCCCATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | GTGGGGAGAATAAGAACCGTGCTAGGGCTGGTCACCTCCTTTCCACTGAGAGAGAGGTGTTGGTCCCCGTaGCTTCTGGCGACCCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: VGRIRTVLGLVTSFPLRERCWSP*LLATPG Trigger: CCCAGGGGTCGCCAGAAGCCACGGGGACCAACACCT...CTCTCTCAGTGGAAAGGAGGTGACCAGCCCTAGCACGGTTCTTATTCTCCCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR GCA 90 bp | ATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTTGGTGAGGATGTGGTGGCCCCAGCACTaGTGTGGCTTTTCTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: IHCEAVPSESTGVLLVRMWWPQH*CGFSLW Trigger: CCAAAGAGAAAAGCCACAGCAGTGCTGGGGCCACCA...CATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | GGGGTGGGGAGAATAAGAACCGTGCTAGGGCTGGTCACCTCCTTTCCACTGAGAGGACATGAGCATCACTaGAAGCAACAGAAGGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: GVGRIRTVLGLVTSFPLRGHEHH*KQQKEG Trigger: CCCTTCCTTCTGTTGCTTCCAGTGATGCTCATGTCC...TCTCAGTGGAAAGGAGGTGACCAGCCCTAGCACGGTTCTTATTCTCCCCACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | GATGGGGGTGGGGAGAATAAGAACCGTGCTAGGGCTGGTCACCTCCTTTCCACTCGTTTGAGAAATTGCTaGCAGGCTCTGGAGGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: DGGGENKNRARAGHLLSTRLRNC*QALEGL Trigger: AAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACG...AGTGGAAAGGAGGTGACCAGCCCTAGCACGGTTCTTATTCTCCCCACCCCCATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | GTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGAAGGGGACATGAGCATCACTaGAAGCAACAGAAGGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: VRPTGGRGVLHSCRVNRRGHEHH*KQQKEG Trigger: CCCTTCCTTCTGTTGCTTCCAGTGATGCTCATGTCC...CCTTCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | GTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGAAGGCGTTTGAGAAATTGCTaGCAGGCTCTGGAGGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VRPTGGRGVLHSCRVNRRRLRNC*QALEGL Trigger: AAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACG...CCTTCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | TATTTTCATTGCAAGTTTTCTGATTGCAATGTGAGGCCAACAGGAGGCCGAGGTCTAGGAGCCAGGTGTTaGTCCCCGTGGCTTCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: YFHCKFSDCNVRPTGGRGLGARC*SPWLLA Trigger: CGCCAGAAGCCACGGGGACCAACACCTGGCTCCTAG...ACCTCGGCCTCCTGTTGGCCTCACATTGCAATCAGAAAACTTGCAATGAAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR TCA 90 bp | GGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGAAGGCATAAGACAAGACCAGGTGACATCGTTTaGGAAATTGCTGGCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: GGRGVLHSCRVNRRHKTRPGDIV*EIAGRL Trigger: GAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGG...TCTTGTCTTATGCCTTCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR GCA 90 bp | ATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTTGGTGAGGATGGCAGGAACCAATCTTTaGATTCACATTCTTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: IHCEAVPSESTGVLLVRMAGTNL*IHILGH Trigger: GTGGCCAAGAATGTGAATGCAAAGATTGGTTCCTGC...CATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR GCA 90 bp | GTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGAAGGTGCGACTTCCTGTGGTaGTTTTGGTGTCCTGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: VRPTGGRGVLHSCRVNRRCDFLW*FWCPVF Trigger: AAAAACAGGACACCAAAAGCACCACAGGAAGTCGCA...CCTTCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074040.4 |
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| CDS-3UTR GCA 90 bp | AATGTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGACATCGTTTGAGAAATTaGTGGCAGGCTCTGGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: NVRPTGGRGVLHSCRVNRHRLRN*WQALEG Trigger: ACCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATG...TCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | AAGTTTTCTGATTGCAATGTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTCTTTGCGACTTCCTGTaGTGCTTTTGGTGTCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: KFSDCNVRPTGGRGVLHSLCDFL*CFWCPV Trigger: AACAGGACACCAAAAGCACCACAGGAAGTCGCAAAG...AGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCACATTGCAATCAGAAAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074040.4 |
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| CDS-3UTR GCA 90 bp | AGAATAAGAACCGTGCTAGGGCTGGTCACCTCCTTTCCACTGAGAGAGTCTAACGCAGGAACCAATCTTTaGATTCACATTCTTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: RIRTVLGLVTSFPLRESNAGTNL*IHILGH Trigger: GTGGCCAAGAATGTGAATGCAAAGATTGGTTCCTGC...GTTAGACTCTCTCAGTGGAAAGGAGGTGACCAGCCCTAGCACGGTTCTTATTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200880.4 |
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| CDS-3UTR CCA 90 bp | TTTCATTGCAAGTTTTCTGATTGCAATGTGAGGCCAACAGGAGGCCGAGGTGTCCTTTGCGACTTCCTGTaGTGCTTTTGGTGTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: FHCKFSDCNVRPTGGRGVLCDFL*CFWCLF Trigger: AAACAGACACCAAAAGCACCACAGGAAGTCGCAAAG...GACACCTCGGCCTCCTGTTGGCCTCACATTGCAATCAGAAAACTTGCAATGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | ATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTTGGTGAGGATGCCTAGGAGCCAGGTGTaGGTCCCCGTGGCTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: IHCEAVPSESTGVLLVRMPRSQV*VPVASG Trigger: GCCAGAAGCCACGGGGACCAACACCTGGCTCCTAGG...CATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | GGGCACAGTCATAGATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCAGGGACACTGCTTCCTaGGTGGCCCCAGCACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: GHSHRYTVRQCLQRALGCRDTAS*VAPALL Trigger: CAGCAGTGCTGGGGCCACCAAGGAAGCAGTGTCCCT...GCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTATCTATGACTGTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | TGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTTGGTGAGGATGGGGGTGACATCGTTTGAGAAATaGCTGGCAGGCTCTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: CEAVPSESTGVLLVRMGVTSFEK*LAGSGG Trigger: CCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATGT...CACCCCCATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTCACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | GGAGGCCGAGGTGTCCTGCATTCTTGTAGGGTAAACAGAAGGCATAAGACAAGAAGGGACACTGCTTCCTaGGTGGCCCCAGCACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: GGRGVLHSCRVNRRHKTRRDTAS*VAPALL Trigger: CAGCAGTGCTGGGGCCACCAAGGAAGCAGTGTCCCT...TCTTGTCTTATGCCTTCTGTTTACCCTACAAGAATGCAGGACACCTCGGCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | TGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTCTTGGTGAGGATGGGGGTGTGCAGGAACCAATCTTaGCATTCACATTCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: CEAVPSESTGVLLVRMGVCRNQS*HSHSWP Trigger: TGGCCAAGAATGTGAATGCAAAGATTGGTTCCTGCA...CACCCCCATCCTCACCAAGAGCACCCCAGTGCTCTCTGAAGGCACTGCCTCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | GGGCACAGTCATAGATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCCTGTGGCTTTTCTCTTaGGGGCTTGCAGGAACCAAT | + |
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Preference number: 5 (lower is better) Translates to: GHSHRYTVRQCLQRALGCLWLFS*GLAGTN Trigger: ATTGGTTCCTGCAAGCCCCAAAGAGAAAAGCCACAG...GCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTATCTATGACTGTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS TCA 90 bp | GGAGCAGAGTCTCAGTACTATAAGGGCAGCGCAAAGCTTGCCAGGTaGCATCGTTTGAGAAATTGCTGGCAGGCTCTGGAGGGTCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: GAESQYYKGSAKLAR*HRLRNCWQALEGLC Trigger: GCAAAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGGCAAGCTTTGCGCTGCCCTTATAGTACTGAGACTCTGCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074040.4 |
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| CDS-3UTR CAA 90 bp | TATTTTCATTGCAAGTTTTCTGATTGCAATGTGAGGCCAACAGGAGGCCGAGGTCCTAGGAGCCAGGTGTaGGTCCCCGTGGCTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: YFHCKFSDCNVRPTGGRGPRSQV*VPVASG Trigger: GCCAGAAGCCACGGGGACCAACACCTGGCTCCTAGG...ACCTCGGCCTCCTGTTGGCCTCACATTGCAATCAGAAAACTTGCAATGAAAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS TCA 90 bp | CTCAGTACTATAAGGGCAGCGCAAAGCTTGCCAGGTGACATCGTTTaGGAAATTGCTGGCAGGCTCTGGAGGGTCTTTGCGACTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: LSTIRAAQSLPGDIV*EIAGRLWRVFATSC Trigger: ACAGGAAGTCGCAAAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGGCAAGCTTTGCGCTGCCCTTATAGTACTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074040.4 |
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| CDS-3UTR CAA 90 bp | GGGGTGGGGAGAATAAGAACCGTGCTAGGGCTGGTCACCTCCTTTCCACTGAGATGCAGGAACCAATCTTaGCATTCACATTCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: GVGRIRTVLGLVTSFPLRCRNQS*HSHSWP Trigger: TGGCCAAGAATGTGAATGCAAAGATTGGTTCCTGCA...TCTCAGTGGAAAGGAGGTGACCAGCCCTAGCACGGTTCTTATTCTCCCCACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | GGGCACAGTCATAGATACACTGTGAGGCAGTGCCTTCAGAGAGCACTGGGGTGCTTTTCTCTTTGGGGCTaGCAGGAACCAATCTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: GHSHRYTVRQCLQRALGCFSLWG*QEPIFA Trigger: TGCAAAGATTGGTTCCTGCAAGCCCCAAAGAGAAAA...GCACCCCAGTGCTCTCTGAAGGCACTGCCTCACAGTGTATCTATGACTGTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | AAGTTTTCTGATTGCAATGTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTACATCGTTTGAGAAATaGCTGGCAGGCTCTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: KFSDCNVRPTGGRGVLHSTSFEK*LAGSGG Trigger: CCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATGT...AGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCACATTGCAATCAGAAAACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS-3UTR CAA 90 bp | AAGTTTTCTGATTGCAATGTGAGGCCAACAGGAGGCCGAGGTGTCCTGCATTCTCTGTGGCTTTTCTCTTaGGGGCTTGCAGGAACCAAT | + |
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Preference number: 5 (lower is better) Translates to: KFSDCNVRPTGGRGVLHSLWLFS*GLAGTN Trigger: ATTGGTTCCTGCAAGCCCCAAAGAGAAAAGCCACAG...AGAATGCAGGACACCTCGGCCTCCTGTTGGCCTCACATTGCAATCAGAAAACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS CCA 72 bp | AAGAGCCACCTCCTAGGAGCCAGGTGTTGGTCCCCGTaGCTTCTGGCGACCCCTGGGTTCGGGCTGCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: KSHLLGARCWSP*LLATPGFGLLK Trigger: CTTCAGCAGCCCGAACCCAGGGGTCGCCAGAAGCCACGGGGACCAACACCTGGCTCCTAGGAGGTGGCTCTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS TCA 72 bp | ATAAGGGCAGCGCAAAGCTTGCCAGGTGACATCGTTTaGGAAATTGCTGGCAGGCTCTGGAGGGTCTTTGCG | + |
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Preference number: 6 (lower is better) Translates to: IRAAQSLPGDIV*EIAGRLWRVFA Trigger: CGCAAAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGGCAAGCTTTGCGCTGCCCTTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS CAA 72 bp | CAGCGCAAAGCTTGCCAGGTGACATCGTTTGAGAAATaGCTGGCAGGCTCTGGAGGGTCTTTGCGACTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QRKACQVTSFEK*LAGSGGSLRLP Trigger: AGGAAGTCGCAAAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGGCAAGCTTTGCGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074040.4 ENSMUST00000200880.4 |
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| CDS TCA 72 bp | TCTCAGTACTATAAGGGCAGCGCAAAGCTTGCCAGGTaGCATCGTTTGAGAAATTGCTGGCAGGCTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SQYYKGSAKLAR*HRLRNCWQALE Trigger: CTCCAGAGCCTGCCAGCAATTTCTCAAACGATGTCACCTGGCAAGCTTTGCGCTGCCCTTATAGTACTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074040.4 |
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| CDS GCA 72 bp | CGTTTGAGAAATTGCTGGCAGGCTCTGGAGGGTCTTTaGGACTTCCTGTGGTGCTTTTGGTGTCCTGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: RLRNCWQALEGL*DFLWCFWCPVF Trigger: AAAAACAGGACACCAAAAGCACCACAGGAAGTCGCAAAGACCCTCCAGAGCCTGCCAGCAATTTCTCAAACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074040.4 |
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