RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CXCL16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018920

Ensembl transcript IDs: ENSMUST00000019064.9, ENSMUST00000126391.2

Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTTGTGGGCCACCATGTGAGTCCTTTAGAGTCTTGAACAATATCTaGAACCTGTTGACTTATCTCTCCAGCCCTCAGCCAATTGGTCTA +
Preference number: 1 (lower is better)
Translates to: GCGPPCESFRVLNNI*NLLTYLSSPQPIGL
Trigger: TAGACCAATTGGCTGAGGGCTGGAGAGATAAGTCAACAGGTTTCAGATATTGTTCAAGACTCTAAAGGACTCACATGGTGGCCCACAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
3UTR CCA 90 bp TTGTTATTGTATGTATATGTGTACCACGTATATAAATGGTGTCTGTaGAGGTCAGAGGGGGTTGTCAAGTCCCCAGGAACCGGAGTTGCG +
Preference number: 1 (lower is better)
Translates to: LLLYVYVYHVYKWCL*RSEGVVKSPGTGVA
Trigger: CGCAACTCCGGTTCCTGGGGACTTGACAACCCCCTCTGACCTCCACAGACACCATTTATATACGTGGTACACATATACATACAATAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
3UTR-3UTR TCA 90 bp GGAGACCTAGGGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTGGGGATCAGCATGAGAAACAGTaGGCTCAGGTTCCATTCACT +
Preference number: 2 (lower is better)
Translates to: GDLGIRSHIHREGWRPGDQHEKQ*AQVPFT
Trigger: AGTGAATGGAACCTGAGCTCACTGTTTCTCATGCTG...ATCCCCAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCCCTAGGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
3UTR-3UTR TCA 90 bp AACTTTACACATGCTAAGCAGGCACTGTACCTTGGGACTGCACTTTTGAACCACATCATCCATCTCTCATaGGCTTCCACTCTTGCTGTA +
Preference number: 2 (lower is better)
Translates to: NFTHAKQALYLGTALLNHIIHLS*ASTLAV
Trigger: TACAGCAAGAGTGGAAGCTCATGAGAGATGGATGAT...GTGGTTCAAAAGTGCAGTCCCAAGGTACAGTGCCTGCTTAGCATGTGTAAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
3UTR-3UTR CCA 90 bp GACCTAGGGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTAGGGATACGAACCTAGGTTCCATATaGATACTTTGTCTCAAGACA +
Preference number: 2 (lower is better)
Translates to: DLGIRSHIHREGWRPRDTNLGSI*ILCLKT
Trigger: TGTCTTGAGACAAAGTATCCATATGGAACCTAGGTT...CGTATCCCTAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCCCTAGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
3UTR-3UTR TCA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGATCATCCATCTCTCATaGGCTTCCACTCTTGCTGTA +
Preference number: 2 (lower is better)
Translates to: GTALLNHVFECYILLDVGIIHLS*ASTLAV
Trigger: TACAGCAAGAGTGGAAGCTCATGAGAGATGGATGAT...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
3UTR-3UTR TCA 90 bp ACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACACACAGCATGAGAAACAGTaGGCTCAGGTTCCATTCACT +
Preference number: 2 (lower is better)
Translates to: TLFKIDLVVGGLNLELYTQHEKQ*AQVPFT
Trigger: AGTGAATGGAACCTGAGCTCACTGTTTCTCATGCTG...TGTGTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
3UTR-3UTR TCA 90 bp ACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACACATGTCTCAAGACAGCATaGGAAACAGTGAGCTCAGGT +
Preference number: 2 (lower is better)
Translates to: TLFKIDLVVGGLNLELYTCLKTA*ETVSSG
Trigger: ACCTGAGCTCACTGTTTCTCATGCTGTCTTGAGACA...TGTGTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
3UTR CCA 72 bp TATGTATATGTGTACCACGTATATAAATGGTGTCTGTaGAGGTCAGAGGGGGTTGTCAAGTCCCCAGGAACC +
Preference number: 3 (lower is better)
Translates to: YVYVYHVYKWCL*RSEGVVKSPGT
Trigger: GGTTCCTGGGGACTTGACAACCCCCTCTGACCTCCACAGACACCATTTATATACGTGGTACACATATACATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
3UTR TCA 72 bp TATGGATACTTTGTCTCAAGACAGCATGAGAAACAGTaGGCTCAGGTTCCATTCACTGATGGAGACGAGCCT +
Preference number: 3 (lower is better)
Translates to: YGYFVSRQHEKQ*AQVPFTDGDEP
Trigger: AGGCTCGTCTCCATCAGTGAATGGAACCTGAGCTCACTGTTTCTCATGCTGTCTTGAGACAAAGTATCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
3UTR-3UTR CAA 90 bp GGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTGGGGATACATAGTCATTTCCATATGGATACTTaGTCTCAAGACAGCATGAGA +
Preference number: 3 (lower is better)
Translates to: GYVVIYTGKAGDLGIHSHFHMDT*SQDSMR
Trigger: TCTCATGCTGTCTTGAGACAAAGTATCCATATGGAA...ATGACTATGTATCCCCAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
3UTR-3UTR CAA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGTTCCATATGGATACTTaGTCTCAAGACAGCATGAGA +
Preference number: 3 (lower is better)
Translates to: GTALLNHVFECYILLDVGFHMDT*SQDSMR
Trigger: TCTCATGCTGTCTTGAGACAAAGTATCCATATGGAA...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp AGACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGCGAAGGTGTCCCCTCTaGGGCCTCAGGGGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: RRACCPTTSPMSSSISHERRCPL*GLRGLG
Trigger: ACCCAGACCCCTGAGGCCGCAGAGGGGACACCTTCG...CTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp CCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGCTTCCACCGGACCCACTGGTCTTaGCTTCCCCCACACACGCTT +
Preference number: 4 (lower is better)
Translates to: PAALPPLPCHHPSLMSFHRTHWS*LPPHTL
Trigger: AAGCGTGTGTGGGGGAAGCCAAGACCAGTGGGTCCG...GTGGAAGCTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp TTCACTGATGGAGACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCACACCGGTACCCAAGCTaGTGTGCTAGCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: FTDGDEPAALPPLPCHHPHRYPS*CASSSS
Trigger: GGAGCTGGAGCTAGCACACCAGCTTGGGTACCGGTG...TGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTCTCCATCAGTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp GGTAGTGGGAGGGTTGAACCTAGAACTTTACACATGCTAAGCAGGCACTGTACCCCAGCGACACTGCCCTaGTTGCCATCGCCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GSGRVEPRTLHMLSRHCTPATLP*LPSPGR
Trigger: CCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGG...GGTACAGTGCCTGCTTAGCATGTGTAAAGTTCTAGGTTCAACCCTCCCACTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp GGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTGGGGATACATAGTCATCCAGCGACACTGCCCTaGTTGCCATCGCCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GYVVIYTGKAGDLGIHSHPATLP*LPSPGR
Trigger: CCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGG...ATGACTATGTATCCCCAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR CCA 90 bp GACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGCCTCCTGATGGAAGAGTaGAGTGCTGAGTGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: DEPAALPPLPCHHPSLMSLLMEE*SAECSD
Trigger: GTCAGAGCACTCAGCACTCCACTCTTCCATCAGGAG...GCTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp ATGAGAAACAGTGAGCTCAGGTTCCATTCACTGATGGAGACGAGCCTGCTGCCCAGCCTGAAGGGAGAGTaGTCATCTCCCAGGGTTGGG +
Preference number: 4 (lower is better)
Translates to: MRNSELRFHSLMETSLLPSLKGE*SSPRVG
Trigger: CCCAACCCTGGGAGATGACCACTCTCCCTTCAGGCT...GGGCAGCAGGCTCGTCTCCATCAGTGAATGGAACCTGAGCTCACTGTTTCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp GACCTGGGGATACATAGTCATATACACAGGGAAGGCTGGAGACCTAGGGATACGCACCGGTACCCAAGCTaGTGTGCTAGCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: DLGIHSHIHREGWRPRDTHRYPS*CASSSS
Trigger: GGAGCTGGAGCTAGCACACCAGCTTGGGTACCGGTG...CGTATCCCTAGGTCTCCAGCCTTCCCTGTGTATATGACTATGTATCCCCAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR CCA 90 bp GGTAGTGGGAGGGTTGAACCTAGAACTTTACACATGCTAAGCAGGCACTGTACCCGGACCCACTGGTCTTaGCTTCCCCCACACACGCTT +
Preference number: 4 (lower is better)
Translates to: GSGRVEPRTLHMLSRHCTRTHWS*LPPHTL
Trigger: AAGCGTGTGTGGGGGAAGCCAAGACCAGTGGGTCCG...GGTACAGTGCCTGCTTAGCATGTGTAAAGTTCTAGGTTCAACCCTCCCACTACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR TCA 90 bp ATGAGAAACAGTGAGCTCAGGTTCCATTCACTGATGGAGACGAGCCTGCTGCCCTTCCAGACCATAGCCTaGAGGGAGAGTGGTCATCTC +
Preference number: 4 (lower is better)
Translates to: MRNSELRFHSLMETSLLPFQTIA*RESGHL
Trigger: GAGATGACCACTCTCCCTTCAGGCTATGGTCTGGAA...GGGCAGCAGGCTCGTCTCCATCAGTGAATGGAACCTGAGCTCACTGTTTCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp CCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGCTTCCACGCTCCTGGTGCTTCTTaGTGTCTGTCATCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: PAALPPLPCHHPSLMSFHAPGAS*CLSSCC
Trigger: ACAGCAAGATGACAGACAGCAAGAAGCACCAGGAGC...GTGGAAGCTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp CCAACACTGCAGAGGCAGGCAGATCTTCTGAGTTTTAGGACTGTCAGGGCTGAACCAGAGCTGCAAACCTaGAGAGTTCTGCTGTGTCGC +
Preference number: 4 (lower is better)
Translates to: PTLQRQADLLSFRTVRAEPELQT*RVLLCR
Trigger: GCGACACAGCAGAACTCTGCAGGTTTGCAGCTCTGG...TTCAGCCCTGACAGTCCTAAAACTCAGAAGATCTGCCTGCCTCTGCAGTGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp ATGAGAAACAGTGAGCTCAGGTTCCATTCACTGATGGAGACGAGCCTGCTGCCCTTGCTGTTTCTCATTTaGCTCAGCCTCAGGCCTAGC +
Preference number: 4 (lower is better)
Translates to: MRNSELRFHSLMETSLLPLLFLI*LSLRPS
Trigger: GCTAGGCCTGAGGCTGAGGCAAATGAGAAACAGCAA...GGGCAGCAGGCTCGTCTCCATCAGTGAATGGAACCTGAGCTCACTGTTTCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp AGACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGCAGGGGTCTGGGTACTaGCTTGAGGCAAATGTTTTT +
Preference number: 4 (lower is better)
Translates to: RRACCPTTSPMSSSISHEQGSGY*LEANVF
Trigger: AAAAACATTTGCCTCAAGCCAGTACCCAGACCCCTG...CTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp GGTAGTGGGAGGGTTGAACCTAGAACTTTACACATGCTAAGCAGGCACTGTACCGCTAGCTCCAGCTCCTaGTGCTTCTTGCTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: GSGRVEPRTLHMLSRHCTASSSS*CFLLSV
Trigger: GACAGACAGCAAGAAGCACCAGGAGCTGGAGCTAGC...GGTACAGTGCCTGCTTAGCATGTGTAAAGTTCTAGGTTCAACCCTCCCACTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp GGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTGGGGATACATAGTCATCCAGAGCTGCAAACCTaGAGAGTTCTGCTGTGTCGC +
Preference number: 4 (lower is better)
Translates to: GYVVIYTGKAGDLGIHSHPELQT*RVLLCR
Trigger: GCGACACAGCAGAACTCTGCAGGTTTGCAGCTCTGG...ATGACTATGTATCCCCAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR CCA 90 bp CCAACACTGCAGAGGCAGGCAGATCTTCTGAGTTTTAGGACTGTCAGGGCTGAAGTACCCTGCGGTATCTaGGTGCCAGAAGAAATGGTA +
Preference number: 4 (lower is better)
Translates to: PTLQRQADLLSFRTVRAEVPCGI*VPEEMV
Trigger: TACCATTTCTTCTGGCACCCAGATACCGCAGGGTAC...TTCAGCCCTGACAGTCCTAAAACTCAGAAGATCTGCCTGCCTCTGCAGTGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp AACTTTACACATGCTAAGCAGGCACTGTACCTTGGGACTGCACTTTTGAACCACGAGTGGAGTGCTGAGTaGTCTGACTATGTGCAGGGG +
Preference number: 4 (lower is better)
Translates to: NFTHAKQALYLGTALLNHEWSAE*SDYVQG
Trigger: CCCCTGCACATAGTCAGAGCACTCAGCACTCCACTC...GTGGTTCAAAAGTGCAGTCCCAAGGTACAGTGCCTGCTTAGCATGTGTAAAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp GACCTGGGGATACATAGTCATATACACAGGGAAGGCTGGAGACCTAGGGATACGCAGGGGTCTGGGTACTaGCTTGAGGCAAATGTTTTT +
Preference number: 4 (lower is better)
Translates to: DLGIHSHIHREGWRPRDTQGSGY*LEANVF
Trigger: AAAAACATTTGCCTCAAGCCAGTACCCAGACCCCTG...CGTATCCCTAGGTCTCCAGCCTTCCCTGTGTATATGACTATGTATCCCCAGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR TCA 90 bp GGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTGGGGATACATAGTCATGTCTGGGTACTGGCTTaGGGCAAATGTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GYVVIYTGKAGDLGIHSHVWVLA*GKCFWW
Trigger: CCACCAAAAACATTTGCCTCAAGCCAGTACCCAGAC...ATGACTATGTATCCCCAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR TCA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGAGGCCATGGCTGCAGTaGGGAAGAAGACAATGGCCA +
Preference number: 4 (lower is better)
Translates to: GTALLNHVFECYILLDVGRPWLQ*GRRQWP
Trigger: TGGCCATTGTCTTCTTCCTCACTGCAGCCATGGCCT...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp AACTTTACACATGCTAAGCAGGCACTGTACCTTGGGACTGCACTTTTGAACCACGTACCCTGCGGTATCTaGGTGCCAGAAGAAATGGTA +
Preference number: 4 (lower is better)
Translates to: NFTHAKQALYLGTALLNHVPCGI*VPEEMV
Trigger: TACCATTTCTTCTGGCACCCAGATACCGCAGGGTAC...GTGGTTCAAAAGTGCAGTCCCAAGGTACAGTGCCTGCTTAGCATGTGTAAAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp AGGTTCCATATGGATACTTTGTCTCAAGACAGCATGAGAAACAGTGAGCTCAGGCTCCTGATGGAAGAGTaGAGTGCTGAGTGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: RFHMDTLSQDSMRNSELRLLMEE*SAECSD
Trigger: GTCAGAGCACTCAGCACTCCACTCTTCCATCAGGAG...CCTGAGCTCACTGTTTCTCATGCTGTCTTGAGACAAAGTATCCATATGGAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGTTGCTGTTTCTCATTTaGCTCAGCCTCAGGCCTAGC +
Preference number: 4 (lower is better)
Translates to: GTALLNHVFECYILLDVGLLFLI*LSLRPS
Trigger: GCTAGGCCTGAGGCTGAGGCAAATGAGAAACAGCAA...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp CATATATTATTAGTTGTAAAGAGTGTTCCCCAAGAGCAGTCCTTTAATCCCAACAGCCTGAAGGGAGAGTaGTCATCTCCCAGGGTTGGG +
Preference number: 4 (lower is better)
Translates to: HILLVVKSVPQEQSFNPNSLKGE*SSPRVG
Trigger: CCCAACCCTGGGAGATGACCACTCTCCCTTCAGGCT...GTTGGGATTAAAGGACTGCTCTTGGGGAACACTCTTTACAACTAATAATATATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp ATATACACAGGGAAGGCTGGAGACCTAGGGATACGTAGTCATATACATAGGGAACACACGCTTTTGGACTaGAACTGGAACCTGATAAAG +
Preference number: 4 (lower is better)
Translates to: IYTGKAGDLGIRSHIHREHTLLD*NWNLIK
Trigger: CTTTATCAGGTTCCAGTTGCAGTCCAAAAGCGTGTG...TTCCCTATGTATATGACTACGTATCCCTAGGTCTCCAGCCTTCCCTGTGTATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR GCA 90 bp ACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACACAGAGTGGAGTGCTGAGTaGTCTGACTATGTGCAGGGG +
Preference number: 4 (lower is better)
Translates to: TLFKIDLVVGGLNLELYTEWSAE*SDYVQG
Trigger: CCCCTGCACATAGTCAGAGCACTCAGCACTCCACTC...TGTGTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp ACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACACAGCTAGCTCCAGCTCCTaGTGCTTCTTGCTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: TLFKIDLVVGGLNLELYTASSSS*CFLLSV
Trigger: GACAGACAGCAAGAAGCACCAGGAGCTGGAGCTAGC...TGTGTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR TCA 90 bp ACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACACATTCCAGACCATAGCCTaGAGGGAGAGTGGTCATCTC +
Preference number: 4 (lower is better)
Translates to: TLFKIDLVVGGLNLELYTFQTIA*RESGHL
Trigger: GAGATGACCACTCTCCCTTCAGGCTATGGTCTGGAA...TGTGTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CCA 90 bp GGTAGTGGGAGGGTTGAACCTAGAACTTTACACATGCTAAGCAGGCACTGTACCGAACCTGATAAAGAATaGACAACGATGAAATGCTTT +
Preference number: 4 (lower is better)
Translates to: GSGRVEPRTLHMLSRHCTEPDKE*TTMKCF
Trigger: AAAGCATTTCATCGTTGTCCATTCTTTATCAGGTTC...GGTACAGTGCCTGCTTAGCATGTGTAAAGTTCTAGGTTCAACCCTCCCACTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR TCA 90 bp CATATATTATTAGTTGTAAAGAGTGTTCCCCAAGAGCAGTCCTTTAATCCCAACGTCTGGGTACTGGCTTaGGGCAAATGTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: HILLVVKSVPQEQSFNPNVWVLA*GKCFWW
Trigger: CCACCAAAAACATTTGCCTCAAGCCAGTACCCAGAC...GTTGGGATTAAAGGACTGCTCTTGGGGAACACTCTTTACAACTAATAATATATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
3UTR CAA 72 bp CATGCTAAGCAGGCACTGTACCTTGGGACTGCACTTTaGAACCACGTATTTGAGTGTTACATTTTATTAGAC +
Preference number: 4 (lower is better)
Translates to: HAKQALYLGTAL*NHVFECYILLD
Trigger: GTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCCAAGGTACAGTGCCTGCTTAGCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR GCA 90 bp CAGACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACCACACGCTTTTGGACTaGAACTGGAACCTGATAAAG +
Preference number: 4 (lower is better)
Translates to: QTLFKIDLVVGGLNLELYHTLLD*NWNLIK
Trigger: CTTTATCAGGTTCCAGTTGCAGTCCAAAAGCGTGTG...GTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS TCA 90 bp GCTGTGTCGCTCTCCTGTTGCACAGCACATAGGCCATGGCTGCAGTaGGGAAGAAGACAATGGCCAGGAGGGACAGCACCGGTACCCAAG +
Preference number: 5 (lower is better)
Translates to: AVSLSCCTAHRPWLQ*GRRQWPGGTAPVPK
Trigger: CTTGGGTACCGGTGCTGTCCCTCCTGGCCATTGTCTTCTTCCTCACTGCAGCCATGGCCTATGTGCTGTGCAACAGGAGAGCGACACAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 90 bp TGCCAGAAGAAATGGTACGATCACAAGAACAACTTCCAGCGACACTaGCCTGGTTGCCATCGCCTGGCAGGGTCAGCAGCGCCAACAAGA +
Preference number: 5 (lower is better)
Translates to: CQKKWYDHKNNFQRH*PGCHRLAGSAAPTR
Trigger: TCTTGTTGGCGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTTCTTCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 90 bp ACCGGTACCCAAGCTGGTGTGCTAGCTCCAGCTCCTGGTGCTTCTTaGTGTCTGTCATCTTGCTGTTTCTCATTTGCCTCAGCCTCAGGC +
Preference number: 5 (lower is better)
Translates to: TGTQAGVLAPAPGAS*CLSSCCFSFASASG
Trigger: GCCTGAGGCTGAGGCAAATGAGAAACAGCAAGATGACAGACAGCAAGAAGCACCAGGAGCTGGAGCTAGCACACCAGCTTGGGTACCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CCA 90 bp ATCACAAGAACAACTTCCAGCGACACTGCCCTGGTTGCCATCGCCTaGCAGGGTCAGCAGCGCCAACAAGAAAAGGAAGAACGCAAGAGA +
Preference number: 5 (lower is better)
Translates to: ITRTTSSDTALVAIA*QGQQRQQEKEERKR
Trigger: TCTCTTGCGTTCTTCCTTTTCTTGTTGGCGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS CCA 90 bp GAAGAAATGGTACGATCACAAGAACAACTTCCAGCGACACTGCCCTaGTTGCCATCGCCTGGCAGGGTCAGCAGCGCCAACAAGAAAAGG +
Preference number: 5 (lower is better)
Translates to: EEMVRSQEQLPATLP*LPSPGRVSSANKKR
Trigger: CCTTTTCTTGTTGGCGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS CCA 90 bp GTTGGGTGTGCTCTTTGTTTAAGGACAGTGCTCCTGATGGAAGAGTaGAGTGCTGAGTGCTCTGACTATGTGCAGGGGTGCTCGTGTCCG +
Preference number: 5 (lower is better)
Translates to: VGCALCLRTVLLMEE*SAECSDYVQGCSCP
Trigger: CGGACACGAGCACCCCTGCACATAGTCAGAGCACTCAGCACTCCACTCTTCCATCAGGAGCACTGTCCTTAAACAAAGAGCACACCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp AGGTTCCATATGGATACTTTGTCTCAAGACAGCATGAGAAACAGTGAGCTCAGGGCGACACTGCCCTGGTaGCCATCGCCTGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: RFHMDTLSQDSMRNSELRATLPW*PSPGRV
Trigger: GACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGC...CCTGAGCTCACTGTTTCTCATGCTGTCTTGAGACAAAGTATCCATATGGAACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp GACAGCATGAGAAACAGTGAGCTCAGGTTCCATTCACTGATGGAGACGAGCCTGCCCCCACACACGCTTTaGGACTGCAACTGGAACCTG +
Preference number: 5 (lower is better)
Translates to: DSMRNSELRFHSLMETSLPPHTL*DCNWNL
Trigger: CAGGTTCCAGTTGCAGTCCAAAAGCGTGTGTGGGGG...CAGGCTCGTCTCCATCAGTGAATGGAACCTGAGCTCACTGTTTCTCATGCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp AGACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGAGCTCCTGGTGCTTCTaGCTGTCTGTCATCTTGCTG +
Preference number: 5 (lower is better)
Translates to: RRACCPTTSPMSSSISHESSWCF*LSVILL
Trigger: CAGCAAGATGACAGACAGCAAGAAGCACCAGGAGCT...CTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS TCA 90 bp TTTCTCATTTGCCTCAGCCTCAGGCCTAGCTTCCAGACCATAGCCTaGAGGGAGAGTGGTCATCTCCCAGGGTTGGGTGTGCTCTTTGTT +
Preference number: 5 (lower is better)
Translates to: FLICLSLRPSFQTIA*RESGHLPGLGVLFV
Trigger: AACAAAGAGCACACCCAACCCTGGGAGATGACCACTCTCCCTTCAGGCTATGGTCTGGAAGCTAGGCCTGAGGCTGAGGCAAATGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 90 bp AAATGGTACGATCACAAGAACAACTTCCAGCGACACTGCCCTGGTTaGCATCGCCTGGCAGGGTCAGCAGCGCCAACAAGAAAAGGAAGA +
Preference number: 5 (lower is better)
Translates to: KWYDHKNNFQRHCPG*HRLAGSAAPTRKGR
Trigger: TCTTCCTTTTCTTGTTGGCGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR CAA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGGCGACACTGCCCTGGTaGCCATCGCCTGGCAGGGTC +
Preference number: 5 (lower is better)
Translates to: GTALLNHVFECYILLDVGATLPW*PSPGRV
Trigger: GACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGC...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp AGACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGGGTTGGGTGTGCTCTTaGTTTAAGGACAGTGCTCCT +
Preference number: 5 (lower is better)
Translates to: RRACCPTTSPMSSSISHEGWVCS*FKDSAP
Trigger: AGGAGCACTGTCCTTAAACAAAGAGCACACCCAACC...CTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp GGAGACCTAGGGATACGTAGTCATATACACAGGGAAGGCTGGAGACCTGGGGATAGCTCCTGGTGCTTCTaGCTGTCTGTCATCTTGCTG +
Preference number: 5 (lower is better)
Translates to: GDLGIRSHIHREGWRPGDSSWCF*LSVILL
Trigger: CAGCAAGATGACAGACAGCAAGAAGCACCAGGAGCT...ATCCCCAGGTCTCCAGCCTTCCCTGTGTATATGACTACGTATCCCTAGGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS CCA 90 bp GGATGTGATCCAAAGTACCCTGCGGTATCTGGGTGCCAGAAGAAATaGTACGATCACAAGAACAACTTCCAGCGACACTGCCCTGGTTGC +
Preference number: 5 (lower is better)
Translates to: GCDPKYPAVSGCQKK*YDHKNNFQRHCPGC
Trigger: GCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTTCTTCTGGCACCCAGATACCGCAGGGTACTTTGGATCACATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 90 bp GTTTTTGGTGGTGAAAACTCTTCCCATGACCAGTTCCACACTCTTTaGGCTCAAAGCAGTCCACTAGTTCACGGACCCACTGGTCTTGGC +
Preference number: 5 (lower is better)
Translates to: VFGGENSSHDQFHTL*AQSSPLVHGPTGLG
Trigger: GCCAAGACCAGTGGGTCCGTGAACTAGTGGACTGCTTTGAGCGCAAAGAGTGTGGAACTGGTCATGGGAAGAGTTTTCACCACCAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp CTGAAACCTGTTGACTTATCTCTCCAGCCCTCAGCCAATTGGTCTAAAAGTAATACGGACCCACTGGTCTaGGCTTCCCCCACACACGCT +
Preference number: 5 (lower is better)
Translates to: LKPVDLSLQPSANWSKSNTDPLV*ASPTHA
Trigger: AGCGTGTGTGGGGGAAGCCAAGACCAGTGGGTCCGT...ATTACTTTTAGACCAATTGGCTGAGGGCTGGAGAGATAAGTCAACAGGTTTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS-3UTR CAA 90 bp AGACGAGCCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGTTGCTGTCTGTCATCTaGCTGTTTCTCATTTGCCTC +
Preference number: 5 (lower is better)
Translates to: RRACCPTTSPMSSSISHELLSVI*LFLICL
Trigger: GAGGCAAATGAGAAACAGCAAGATGACAGACAGCAA...CTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGGCTCGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp CCTGCTGCCCTACCACCTCTCCCATGTCATCATCCATCTCTCATGAGCTTCCACTTGAGGCAAATGTTTTaGGTGGTGAAAACTCTTCCC +
Preference number: 5 (lower is better)
Translates to: PAALPPLPCHHPSLMSFHLRQMF*VVKTLP
Trigger: GGGAAGAGTTTTCACCACCAAAAACATTTGCCTCAA...GTGGAAGCTCATGAGAGATGGATGATGACATGGGAGAGGTGGTAGGGCAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGCCCCCACACACGCTTTaGGACTGCAACTGGAACCTG +
Preference number: 5 (lower is better)
Translates to: GTALLNHVFECYILLDVGPPHTL*DCNWNL
Trigger: CAGGTTCCAGTTGCAGTCCAAAAGCGTGTGTGGGGG...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp GACAGCATGAGAAACAGTGAGCTCAGGTTCCATTCACTGATGGAGACGAGCCTGTTGCTGTCTGTCATCTaGCTGTTTCTCATTTGCCTC +
Preference number: 5 (lower is better)
Translates to: DSMRNSELRFHSLMETSLLLSVI*LFLICL
Trigger: GAGGCAAATGAGAAACAGCAAGATGACAGACAGCAA...CAGGCTCGTCTCCATCAGTGAATGGAACCTGAGCTCACTGTTTCTCATGCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp CAGACACTTTTTAAAATTGATCTGGTAGTGGGAGGGTTGAACCTAGAACTTTACGGTTGGGTGTGCTCTTaGTTTAAGGACAGTGCTCCT +
Preference number: 5 (lower is better)
Translates to: QTLFKIDLVVGGLNLELYGWVCS*FKDSAP
Trigger: AGGAGCACTGTCCTTAAACAAAGAGCACACCCAACC...GTAAAGTTCTAGGTTCAACCCTCCCACTACCAGATCAATTTTAAAAAGTGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS-3UTR CAA 90 bp GGGACTGCACTTTTGAACCACGTATTTGAGTGTTACATTTTATTAGACGTGGGGTTGAGGCAAATGTTTTaGGTGGTGAAAACTCTTCCC +
Preference number: 5 (lower is better)
Translates to: GTALLNHVFECYILLDVGLRQMF*VVKTLP
Trigger: GGGAAGAGTTTTCACCACCAAAAACATTTGCCTCAA...CCCCACGTCTAATAAAATGTAACACTCAAATACGTGGTTCAAAAGTGCAGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CCA 72 bp GACAATGGCCAGGAGGGACAGCACCGGTACCCAAGCTaGTGTGCTAGCTCCAGCTCCTGGTGCTTCTTGCTG +
Preference number: 6 (lower is better)
Translates to: DNGQEGQHRYPS*CASSSSWCFLL
Trigger: CAGCAAGAAGCACCAGGAGCTGGAGCTAGCACACCAGCTTGGGTACCGGTGCTGTCCCTCCTGGCCATTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS TCA 72 bp TGCCTCAGCCTCAGGCCTAGCTTCCAGACCATAGCCTaGAGGGAGAGTGGTCATCTCCCAGGGTTGGGTGTG +
Preference number: 6 (lower is better)
Translates to: CLSLRPSFQTIA*RESGHLPGLGV
Trigger: CACACCCAACCCTGGGAGATGACCACTCTCCCTTCAGGCTATGGTCTGGAAGCTAGGCCTGAGGCTGAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS TCA 72 bp CTCTCCTGTTGCACAGCACATAGGCCATGGCTGCAGTaGGGAAGAAGACAATGGCCAGGAGGGACAGCACCG +
Preference number: 6 (lower is better)
Translates to: LSCCTAHRPWLQ*GRRQWPGGTAP
Trigger: CGGTGCTGTCCCTCCTGGCCATTGTCTTCTTCCTCACTGCAGCCATGGCCTATGTGCTGTGCAACAGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 72 bp GATCACAAGAACAACTTCCAGCGACACTGCCCTGGTTaGCATCGCCTGGCAGGGTCAGCAGCGCCAACAAGA +
Preference number: 6 (lower is better)
Translates to: DHKNNFQRHCPG*HRLAGSAAPTR
Trigger: TCTTGTTGGCGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 72 bp AAATGGTACGATCACAAGAACAACTTCCAGCGACACTaGCCTGGTTGCCATCGCCTGGCAGGGTCAGCAGCG +
Preference number: 6 (lower is better)
Translates to: KWYDHKNNFQRH*PGCHRLAGSAA
Trigger: CGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CCA 72 bp TTGCGCTCAAAGCAGTCCACTAGTTCACGGACCCACTaGTCTTGGCTTCCCCCACACACGCTTTTGGACTGC +
Preference number: 6 (lower is better)
Translates to: LRSKQSTSSRTH*SWLPPHTLLDC
Trigger: GCAGTCCAAAAGCGTGTGTGGGGGAAGCCAAGACCAGTGGGTCCGTGAACTAGTGGACTGCTTTGAGCGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CAA 90 bp CACCGGTACCCAAGCTGGTGTGCTAGCTCCAGCTCCTGGTGCTTCTaGCTGTCTGTCATCTTGCTGTTTCTCATTTGCCTCAGCCTCAGG +
Preference number: 6 (lower is better)
Translates to: HRYPSWCASSSSWCF*LSVILLFLICLSLR
Trigger: CCTGAGGCTGAGGCAAATGAGAAACAGCAAGATGACAGACAGCAAGAAGCACCAGGAGCTGGAGCTAGCACACCAGCTTGGGTACCGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CAA 90 bp GAAATGGTACGATCACAAGAACAACTTCCAGCGACACTGCCCTGGTaGCCATCGCCTGGCAGGGTCAGCAGCGCCAACAAGAAAAGGAAG +
Preference number: 6 (lower is better)
Translates to: EMVRSQEQLPATLPW*PSPGRVSSANKKRK
Trigger: CTTCCTTTTCTTGTTGGCGCTGCTGACCCTGCCAGGCGATGGCAACCAGGGCAGTGTCGCTGGAAGTTGTTCTTGTGATCGTACCATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019064.9
CDS GCA 72 bp CCTGAAGGGAGAGTGGTCATCTCCCAGGGTTGGGTGTaGTCTTTGTTTAAGGACAGTGCTCCTGATGGAAGA +
Preference number: 6 (lower is better)
Translates to: PEGRVVISQGWV*SLFKDSAPDGR
Trigger: TCTTCCATCAGGAGCACTGTCCTTAAACAAAGAGCACACCCAACCCTGGGAGATGACCACTCTCCCTTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 72 bp TCTTGGTTCAACAGGAGTGTACCAGAGCTGCAAACCTaGAGAGTTCTGCTGTGTCGCTCTCCTGTTGCACAG +
Preference number: 6 (lower is better)
Translates to: SWFNRSVPELQT*RVLLCRSPVAQ
Trigger: CTGTGCAACAGGAGAGCGACACAGCAGAACTCTGCAGGTTTGCAGCTCTGGTACACTCCTGTTGAACCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CCA 72 bp GCTCTTTGTTTAAGGACAGTGCTCCTGATGGAAGAGTaGAGTGCTGAGTGCTCTGACTATGTGCAGGGGTGC +
Preference number: 6 (lower is better)
Translates to: ALCLRTVLLMEE*SAECSDYVQGC
Trigger: GCACCCCTGCACATAGTCAGAGCACTCAGCACTCCACTCTTCCATCAGGAGCACTGTCCTTAAACAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CAA 72 bp CGGACCCACTGGTCTTGGCTTCCCCCACACACGCTTTaGGACTGCAACTGGAACCTGATAAAGAATGGACAA +
Preference number: 6 (lower is better)
Translates to: RTHWSWLPPHTL*DCNWNLIKNGQ
Trigger: TTGTCCATTCTTTATCAGGTTCCAGTTGCAGTCCAAAAGCGTGTGTGGGGGAAGCCAAGACCAGTGGGTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS CAA 72 bp CCAAGCTGGTGTGCTAGCTCCAGCTCCTGGTGCTTCTaGCTGTCTGTCATCTTGCTGTTTCTCATTTGCCTC +
Preference number: 6 (lower is better)
Translates to: PSWCASSSSWCF*LSVILLFLICL
Trigger: GAGGCAAATGAGAAACAGCAAGATGACAGACAGCAAGAAGCACCAGGAGCTGGAGCTAGCACACCAGCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2
CDS GCA 72 bp GGTGAAAACTCTTCCCATGACCAGTTCCACACTCTTTaGGCTCAAAGCAGTCCACTAGTTCACGGACCCACT +
Preference number: 6 (lower is better)
Translates to: GENSSHDQFHTL*AQSSPLVHGPT
Trigger: AGTGGGTCCGTGAACTAGTGGACTGCTTTGAGCGCAAAGAGTGTGGAACTGGTCATGGGAAGAGTTTTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019064.9
ENSMUST00000126391.2