Pregenerated sensors for CXCL15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029375Ensembl transcript IDs: ENSMUST00000031322.7
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGGAGAGGCATCCGGTTCACAGAAAAAGGCAAACACAAAAGAGTTaGCTAGAGAAAGCCTACACACAGTCCTCTTTGGACACAGTGTTC | + |
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Preference number: 1 (lower is better) Translates to: MERHPVHRKRQTQKS*LEKAYTQSSLDTVF Trigger: GAACACTGTGTCCAAAGAGGACTGTGTGTAGGCTTTCTCTAGCCAACTCTTTTGTGTTTGCCTTTTTCTGTGAACCGGATGCCTCTCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR CCA 90 bp | TTATTGGTGTTATATATGCCAAATTTCTGTCAGGAAGAAGCTAAGTaGTCAGAACGTGGCGGTATCTCTGTCTCTCTGCACCTCACTTGT | + |
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Preference number: 1 (lower is better) Translates to: LLVLYMPNFCQEEAK*SERGGISVSLHLTC Trigger: ACAAGTGAGGTGCAGAGAGACAGAGATACCGCCACGTTCTGACCACTTAGCTTCTTCCTGACAGAAATTTGGCATATATAACACCAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR CCA 90 bp | TCCTACAGTGACAGGAGGCTCCCTGAGATGTCATGGCCACCTAGCCTGACATTCGATCTTGCCTCAAGGTaGGAATTGAGAACTGACACC | + |
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Preference number: 2 (lower is better) Translates to: SYSDRRLPEMSWPPSLTFDLASR*ELRTDT Trigger: GGTGTCAGTTCTCAATTCCCACCTTGAGGCAAGATC...GAATGTCAGGCTAGGTGGCCATGACATCTCAGGGAGCCTCCTGTCACTGTAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR CCA 90 bp | ACCCATCCACCACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATATCAAGAAATaGGGATGGGGGAGCAGTCAC | + |
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Preference number: 2 (lower is better) Translates to: THPPLVCVCVCVCVCVCVCNIKK*GWGSSH Trigger: GTGACTGCTCCCCCATCCCCATTTCTTGATATTACA...CACACACACACACACACACACACACACACACACACACACCAGTGGTGGATGGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCTACACACAGTCCTCTTTGGACACAGTGTTCTTGCCTTGGCTCCAAGGTAGAAGTATTTCACCCTaGGGCACTGAAGACAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: KAYTQSSLDTVFLPWLQGRSISP*GTEDKE Trigger: CTCCTTGTCTTCAGTGCCCCAGGGTGAAATACTTCT...ACCTTGGAGCCAAGGCAAGAACACTGTGTCCAAAGAGGACTGTGTGTAGGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR CAA 90 bp | TGGCTAGAGAAAGCCTACACACAGTCCTCTTTGGACACAGTGTTCTaGCCTTGGCTCCAAGGTAATATCATTCATCTTGTAACACACTCT | + |
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Preference number: 2 (lower is better) Translates to: WLEKAYTQSSLDTVF*PWLQGNIIHLVTHS Trigger: AGAGTGTGTTACAAGATGAATGATATTACCTTGGAGCCAAGGCAAGAACACTGTGTCCAAAGAGGACTGTGTGTAGGCTTTCTCTAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR TCA 90 bp | CTAGTATTCAAGCCATTCAAGCAGGAAGACCAAGGTTTGAGTTCCCAGAATCAACCTCAAGGTGGGAATTaGGAACTGACACCTGAAGTT | + |
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Preference number: 2 (lower is better) Translates to: LVFKPFKQEDQGLSSQNQPQGGN*ELTPEV Trigger: AACTTCAGGTGTCAGTTCTCAATTCCCACCTTGAGG...TTGATTCTGGGAACTCAAACCTTGGTCTTCCTGCTTGAATGGCTTGAATACTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR TCA 90 bp | AGACCAAGGTTTGAGTTCCCAGAATCAACGCAAAGCCAAAAGCAAATATATCTGTTGAGAACTGACACCTaGAGTTTTGCACATACATAT | + |
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Preference number: 2 (lower is better) Translates to: RPRFEFPESTQSQKQIYLLRTDT*SFAHTY Trigger: ATATGTATGTGCAAAACTTCAGGTGTCAGTTCTCAA...CAGATATATTTGCTTTTGGCTTTGCGTTGATTCTGGGAACTCAAACCTTGGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR GCA 72 bp | GTGGCGGTATCTCTGTCTCTCTGCACCTCACTTGTCTaGAGCGGTGTCCTGATTATCGTCCTCAAATGTGGA | + |
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Preference number: 3 (lower is better) Translates to: VAVSLSLCTSLV*SGVLIIVLKCG Trigger: TCCACATTTGAGGACGATAATCAGGACACCGCTGCAGACAAGTGAGGTGCAGAGAGACAGAGATACCGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR CAA 90 bp | TCCTACAGTGACAGGAGGCTCCCTGAGATGTCATGGCCACCTAGCCTGACATTCTGTGTGTGTGTGTGTTaGAAGCACAGTGTCCCTATA | + |
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Preference number: 3 (lower is better) Translates to: SYSDRRLPEMSWPPSLTFCVCVC*KHSVPI Trigger: TATAGGGACACTGTGCTTCAAACACACACACACACA...GAATGTCAGGCTAGGTGGCCATGACATCTCAGGGAGCCTCCTGTCACTGTAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR TCA 72 bp | ACAGGAGGCTCCCTGAGATGTCATGGCCACCTAGCCTaGCATTCTTGGTGTAAAAACAACAGAGGGATCTTG | + |
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Preference number: 3 (lower is better) Translates to: TGGSLRCHGHLA*HSWCKNNRGIL Trigger: CAAGATCCCTCTGTTGTTTTTACACCAAGAATGTCAGGCTAGGTGGCCATGACATCTCAGGGAGCCTCCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR TCA 72 bp | TGTCTCTCTGCACCTCACTTGTCTGCAGCGGTGTCCTaGTTATCGTCCTCAAATGTGGAAAGCCTTGATTTC | + |
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Preference number: 3 (lower is better) Translates to: CLSAPHLSAAVS*LSSSNVESLDF Trigger: GAAATCAAGGCTTTCCACATTTGAGGACGATAATCAGGACACCGCTGCAGACAAGTGAGGTGCAGAGAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR CCA 72 bp | CATCCGGTTCACAGAAAAAGGCAAACACAAAAGAGTTaGCTAGAGAAAGCCTACACACAGTCCTCTTTGGAC | + |
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Preference number: 3 (lower is better) Translates to: HPVHRKRQTQKS*LEKAYTQSSLD Trigger: GTCCAAAGAGGACTGTGTGTAGGCTTTCTCTAGCCAACTCTTTTGTGTTTGCCTTTTTCTGTGAACCGGATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR TCA 72 bp | ACAGAGGGATCTTGCCTCAAGGTGGGAATTGAGAACTaGCACCTGAAGTTTTGCACATACATATTCACACAC | + |
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Preference number: 3 (lower is better) Translates to: TEGSCLKVGIEN*HLKFCTYIFTH Trigger: GTGTGTGAATATGTATGTGCAAAACTTCAGGTGTCAGTTCTCAATTCCCACCTTGAGGCAAGATCCCTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR CCA 72 bp | TACACACAGTCCTCTTTGGACACAGTGTTCTTGCCTTaGCTCCAAGGTAATATCATTCATCTTGTAACACAC | + |
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Preference number: 3 (lower is better) Translates to: YTQSSLDTVFLP*LQGNIIHLVTH Trigger: GTGTGTTACAAGATGAATGATATTACCTTGGAGCCAAGGCAAGAACACTGTGTCCAAAGAGGACTGTGTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR CAA 90 bp | AGACCAAGGTTTGAGTTCCCAGAATCAACGCAAAGCCAAAAGCAAATATATCTGCTGACACCTGAAGTTTaGCACATACATATTCACACA | + |
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Preference number: 3 (lower is better) Translates to: RPRFEFPESTQSQKQIYLLTPEV*HIHIHT Trigger: TGTGTGAATATGTATGTGCAAAACTTCAGGTGTCAG...CAGATATATTTGCTTTTGGCTTTGCGTTGATTCTGGGAACTCAAACCTTGGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR CCA 72 bp | ATGATCAGTAACACCTCTTTCAAAACTAAAAATGGGTaGATGACTGTCCATGCAGAACAGCAAAGCAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: MISNTSFKTKNG*MTVHAEQQSRK Trigger: CTTTCTGCTTTGCTGTTCTGCATGGACAGTCATCCACCCATTTTTAGTTTTGAAAGAGGTGTTACTGATCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| 3UTR-3UTR CAA 90 bp | CAAGTGCTGGTATTACATGCATATCCCACTGAGTCTCAATTAAGACATATTTTTGAGTGGGATAAGACTTaGAAGCACAAAATGTTAAGC | + |
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Preference number: 3 (lower is better) Translates to: QVLVLHAYPTESQLRHIFEWDKT*KHKMLS Trigger: GCTTAACATTTTGTGCTTCAAAGTCTTATCCCACTC...AAAAATATGTCTTAATTGAGACTCAGTGGGATATGCATGTAATACCAGCACTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR TCA 90 bp | TACCCATCCACCACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATTCCTTTTGTTTaGGGTCCTCAGGTAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: YPSTTGVCVCVCVCVCVCEIPFV*GPQVGT Trigger: GGTTCCTACCTGAGGACCTCAAACAAAAGGAATTTC...ACACACACACACACACACACACACACACACACACACACCAGTGGTGGATGGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR TCA 90 bp | CTAGTATTCAAGCCATTCAAGCAGGAAGACCAAGGTTTGAGTTCCCAGAATCAAAGACATCGTAGCTCTTaGGTGTCACAGGGACGGACG | + |
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Preference number: 4 (lower is better) Translates to: LVFKPFKQEDQGLSSQNQRHRSS*VSQGRT Trigger: CGTCCGTCCCTGTGACACTCAAGAGCTACGATGTCT...TTGATTCTGGGAACTCAAACCTTGGTCTTCCTGCTTGAATGGCTTGAATACTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR GCA 90 bp | TCCTACAGTGACAGGAGGCTCCCTGAGATGTCATGGCCACCTAGCCTGACATTCTCACTTCCTTTCTGTTaGAGTAAATGGTCTCGAATA | + |
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Preference number: 4 (lower is better) Translates to: SYSDRRLPEMSWPPSLTFSLPFC*SKWSRI Trigger: TATTCGAGACCATTTACTGCAACAGAAAGGAAGTGA...GAATGTCAGGCTAGGTGGCCATGACATCTCAGGGAGCCTCCTGTCACTGTAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR GCA 90 bp | CCATCCACCACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGAGGCTTTTCATaGTCAACACTATACAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: PSTTGVCVCVCVCVCVCVYRGFS*STLYRS Trigger: GCTTCTGTATAGTGTTGAGCATGAAAAGCCTCTATA...CACACACACACACACACACACACACACACACACACACACACCAGTGGTGGATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR CCA 90 bp | GAAATGGAGAGGCATCCGGTTCACAGAAAAAGGCAAACACAAAAGAGTTGGCTAAGTAGCCTTCACCCATaGAGCATCAGGATCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: EMERHPVHRKRQTQKSWLSSLHP*SIRIQT Trigger: TGTTTGGATCCTGATGCTCCATGGGTGAAGGCTACT...TAGCCAACTCTTTTGTGTTTGCCTTTTTCTGTGAACCGGATGCCTCTCCATTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR CCA 90 bp | AAATATTTATGCTATACAATTGATATCACCTCATCTACCCATCCACCACTGGTGGAACCTGTTAGTAATTaGGCCAACAGTAGCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: KYLCYTIDITSSTHPPLVEPVSN*ANSSLH Trigger: GTGAAGGCTACTGTTGGCCCAATTACTAACAGGTTC...CACCAGTGGTGGATGGGTAGATGAGGTGATATCAATTGTATAGCATAAATATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR CCA 90 bp | AGACCAAGGTTTGAGTTCCCAGAATCAACGCAAAGCCAAAAGCAAATATATCTGAGAGGTCTCCCGAATTaGAAAGGGAAATATTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: RPRFEFPESTQSQKQIYLRGLPN*KGKYSL Trigger: AAGAGAATATTTCCCTTTCCAATTCGGGAGACCTCT...CAGATATATTTGCTTTTGGCTTTGCGTTGATTCTGGGAACTCAAACCTTGGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR CCA 90 bp | AAATATTTATGCTATACAATTGATATCACCTCATCTACCCATCCACCACTGGTGAAGCTTCATTGCCGGTaGAAATTCCTTTTGTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: KYLCYTIDITSSTHPPLVKLHCR*KFLLFE Trigger: CTCAAACAAAAGGAATTTCCACCGGCAATGAAGCTT...CACCAGTGGTGGATGGGTAGATGAGGTGATATCAATTGTATAGCATAAATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS TCA 90 bp | AAGCTGACTTCACTGGAGTCCCGTAGAAAATTCCTATCACTGTTGTaGGCTAAATCAGCAAAGTGTCTAGAGGTCTCCCGAATTGGAAAG | + |
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Preference number: 5 (lower is better) Translates to: KLTSLESRRKFLSLL*AKSAKCLEVSRIGK Trigger: CTTTCCAATTCGGGAGACCTCTAGACACTTTGCTGATTTAGCTCACAACAGTGATAGGAATTTTCTACGGGACTCCAGTGAAGTCAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS-3UTR CAA 90 bp | GTGGAAAGCCTTGATTTCCTATCGTTGTTCCCATCCACATTTTCGTTTGCCTATTCATACTCCCATTTTTaGGGACTGCTATCACTTCCT | + |
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Preference number: 5 (lower is better) Translates to: VESLDFLSLFPSTFSFAYSYSHF*GLLSLP Trigger: AGGAAGTGATAGCAGTCCCAAAAAATGGGAGTATGA...ATAGGCAAACGAAAATGTGGATGGGAACAACGATAGGAAATCAAGGCTTTCCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS GCA 90 bp | CTCTTGTTCTCAGGTCTCCCAAATGAAAGATATAGAGGCTTTTCATaGTCAACACTATACAGAAGCTTCATTGCCGGTGGAAATTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: LLFSGLPNERYRGFS*STLYRSFIAGGNSF Trigger: AAAGGAATTTCCACCGGCAATGAAGCTTCTGTATAGTGTTGAGCATGAAAAGCCTCTATATCTTTCATTTGGGAGACCTGAGAACAAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS TCA 72 bp | TCACTGGAGTCCCGTAGAAAATTCCTATCACTGTTGTaGGCTAAATCAGCAAAGTGTCTAGAGGTCTCCCGA | + |
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Preference number: 6 (lower is better) Translates to: SLESRRKFLSLL*AKSAKCLEVSR Trigger: TCGGGAGACCTCTAGACACTTTGCTGATTTAGCTCACAACAGTGATAGGAATTTTCTACGGGACTCCAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS CCA 72 bp | CCTGTTAGTAATTGGGCCAACAGTAGCCTTCACCCATaGAGCATCAGGATCCAAACAAATCATACTCCCATT | + |
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Preference number: 6 (lower is better) Translates to: PVSNWANSSLHP*SIRIQTNHTPI Trigger: AATGGGAGTATGATTTGTTTGGATCCTGATGCTCCATGGGTGAAGGCTACTGTTGGCCCAATTACTAACAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS CAA 90 bp | TCACCCATGGAGCATCAGGATCCAAACAAATCATACTCCCATTTTTaGGGACTGCTATCACTTCCTTTCTGTTGCAGTAAATGGTCTCGA | + |
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Preference number: 6 (lower is better) Translates to: SPMEHQDPNKSYSHF*GLLSLPFCCSKWSR Trigger: TCGAGACCATTTACTGCAACAGAAAGGAAGTGATAGCAGTCCCAAAAAATGGGAGTATGATTTGTTTGGATCCTGATGCTCCATGGGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS GCA 72 bp | TCAGGTCTCCCAAATGAAAGATATAGAGGCTTTTCATaGTCAACACTATACAGAAGCTTCATTGCCGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: SGLPNERYRGFS*STLYRSFIAGG Trigger: TCCACCGGCAATGAAGCTTCTGTATAGTGTTGAGCATGAAAAGCCTCTATATCTTTCATTTGGGAGACCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS CAA 72 bp | CTAGAGGTCTCCCGAATTGGAAAGGGAAATATTCTCTaGTTCTCAGGTCTCCCAAATGAAAGATATAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LEVSRIGKGNIL*FSGLPNERYRG Trigger: GCCTCTATATCTTTCATTTGGGAGACCTGAGAACAAGAGAATATTTCCCTTTCCAATTCGGGAGACCTCTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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| CDS CAA 72 bp | GAGCATCAGGATCCAAACAAATCATACTCCCATTTTTaGGGACTGCTATCACTTCCTTTCTGTTGCAGTAAA | + |
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Preference number: 6 (lower is better) Translates to: EHQDPNKSYSHF*GLLSLPFCCSK Trigger: TTTACTGCAACAGAAAGGAAGTGATAGCAGTCCCAAAAAATGGGAGTATGATTTGTTTGGATCCTGATGCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031322.7 |
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