RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CXCL13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023078

Ensembl transcript IDs: ENSMUST00000023840.7

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCAGGAAGCTTTTCTCTAAAGGAGACCTGCTTTGCACCACCTCATaGTGGCATTGCACCAGCTTCCCAGGAACCTTCTGGAGACTATTT +
Preference number: 1 (lower is better)
Translates to: PRKLFSKGDLLCTTS*WHCTSFPGTFWRLF
Trigger: AAATAGTCTCCAGAAGGTTCCTGGGAAGCTGGTGCAATGCCATCATGAGGTGGTGCAAAGCAGGTCTCCTTTAGAGAAAAGCTTCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR GCA 90 bp AAAGTAGGACTGTTTCCCCCAGGAAGCTTTTCTCTAAAGGAGACCTaGTTTGCACCACCTCATGATGGCATTGCACCAGCTTCCCAGGAA +
Preference number: 1 (lower is better)
Translates to: KVGLFPPGSFSLKET*FAPPHDGIAPASQE
Trigger: TTCCTGGGAAGCTGGTGCAATGCCATCATGAGGTGGTGCAAAGCAGGTCTCCTTTAGAGAAAAGCTTCCTGGGGGAAACAGTCCTACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR CAA 90 bp ATGATGGCATTGCACCAGCTTCCCAGGAACCTTCTGGAGACTATTTaGGAAGCCTGCGTTTTACAAGGGTGCAAAATAACTGAAGTCCAT +
Preference number: 2 (lower is better)
Translates to: MMALHQLPRNLLETI*EACVLQGCKITEVH
Trigger: ATGGACTTCAGTTATTTTGCACCCTTGTAAAACGCAGGCTTCCAAAATAGTCTCCAGAAGGTTCCTGGGAAGCTGGTGCAATGCCATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR-3UTR GCA 90 bp CAACCTTTCAAAGTAGGACTGTTTCCCCCAGGAAGCTTTTCTCTAAAGGAGACCTGGGTTGTCACTAAATaGCTGTTCTCAAATAGCCTT +
Preference number: 2 (lower is better)
Translates to: QPFKVGLFPPGSFSLKETWVVTK*LFSNSL
Trigger: AAGGCTATTTGAGAACAGGCATTTAGTGACAACCCA...GGTCTCCTTTAGAGAAAAGCTTCCTGGGGGAAACAGTCCTACTTTGAAAGGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR-3UTR CCA 90 bp GGAAACATTAAAGAATCTGATACAAGAGGCTGGTATTTTGTCTGTGTGAAAGATCACATGCATCTGAAGTaGGTTGTCACTAAATGCCTG +
Preference number: 2 (lower is better)
Translates to: GNIKESDTRGWYFVCVKDHMHLK*VVTKCL
Trigger: CAGGCATTTAGTGACAACCCACTTCAGATGCATGTG...ATCTTTCACACAGACAAAATACCAGCCTCTTGTATCAGATTCTTTAATGTTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR TCA 72 bp AGGAACAAGGATGTGGGTTGGGTATGCAACGGAGCTTaGGCATTCCCTCTCAGCTCCTGCAGGATTGGGTTT +
Preference number: 3 (lower is better)
Translates to: RNKDVGWVCNGA*AFPLSSCRIGF
Trigger: AAACCCAATCCTGCAGGAGCTGAGAGGGAATGCTCAAGCTCCGTTGCATACCCAACCCACATCCTTGTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR GCA 72 bp CTGTTTCCCCCAGGAAGCTTTTCTCTAAAGGAGACCTaGTTTGCACCACCTCATGATGGCATTGCACCAGCT +
Preference number: 3 (lower is better)
Translates to: LFPPGSFSLKET*FAPPHDGIAPA
Trigger: AGCTGGTGCAATGCCATCATGAGGTGGTGCAAAGCAGGTCTCCTTTAGAGAAAAGCTTCCTGGGGGAAACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR CCA 72 bp ATTAAACAACAGATCTATTACCACATGCATCTGAAGTaGGTTGTCACTAAATGCCTGTTCTCAAATAGCCTT +
Preference number: 3 (lower is better)
Translates to: IKQQIYYHMHLK*VVTKCLFSNSL
Trigger: AAGGCTATTTGAGAACAGGCATTTAGTGACAACCCACTTCAGATGCATGTGGTAATAGATCTGTTGTTTAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR CAA 72 bp AAGGAACAAGGATGTGGGTTGGGTATGCAACGGAGCTaGAGCATTCCCTCTCAGCTCCTGCAGGATTGGGTT +
Preference number: 4 (lower is better)
Translates to: KEQGCGLGMQRS*SIPSQLLQDWV
Trigger: AACCCAATCCTGCAGGAGCTGAGAGGGAATGCTCAAGCTCCGTTGCATACCCAACCCACATCCTTGTTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS-3UTR CCA 90 bp ACCAGCTTCCCAGGAACCTTCTGGAGACTATTTTGGAAGCCTGCGTTTTACAAGGCTTCCAGAATACCGTaGCCTGGAGAGAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: TSFPGTFWRLFWKPAFYKASRIP*PGERQL
Trigger: CAGCTGCCTCTCTCCAGGCCACGGTATTCTGGAAGC...CTTGTAAAACGCAGGCTTCCAAAATAGTCTCCAGAAGGTTCCTGGGAAGCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS-3UTR TCA 90 bp ACCAGCTTCCCAGGAACCTTCTGGAGACTATTTTGGAAGCCTGCGTTTTACAAGTGGAGCTTGGGGAGTTaGAGACAGACTTTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: TSFPGTFWRLFWKPAFYKWSLGS*RQTFAL
Trigger: CAAAGCAAAAGTCTGTCTTCAACTCCCCAAGCTCCA...CTTGTAAAACGCAGGCTTCCAAAATAGTCTCCAGAAGGTTCCTGGGAAGCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR CAA 72 bp TCTCAAATAGCCTTTCTTAAGGAACAAGGATGTGGGTaGGGTATGCAACGGAGCTTGAGCATTCCCTCTCAG +
Preference number: 4 (lower is better)
Translates to: SQIAFLKEQGCG*GMQRSLSIPSQ
Trigger: CTGAGAGGGAATGCTCAAGCTCCGTTGCATACCCAACCCACATCCTTGTTCCTTAAGAAAGGCTATTTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS-3UTR CCA 90 bp GGAAACATTAAAGAATCTGATACAAGAGGCTGGTATTTTGTCTGTGTGAAAGATCAGAATACCGTGGCCTaGAGAGAGGCAGCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: GNIKESDTRGWYFVCVKDQNTVA*REAAGQ
Trigger: CTGGCCAGCTGCCTCTCTCCAGGCCACGGTATTCTG...ATCTTTCACACAGACAAAATACCAGCCTCTTGTATCAGATTCTTTAATGTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
3UTR CAA 72 bp GCAAACCTCTTGTTAGTACGAGCTACAAGTTCACATTaGACATGTAGGTTTTTCATTCCTCGACAATCTAGG +
Preference number: 4 (lower is better)
Translates to: ANLLLVRATSSH*TCRFFIPRQSR
Trigger: CCTAGATTGTCGAGGAATGAAAAACCTACATGTCAAATGTGAACTTGTAGCTCGTACTAACAAGAGGTTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS-3UTR CAA 90 bp GCTTTGCACCACCTCATGATGGCATTGCACCAGCTTCCCAGGAACCTTCTGGAGACCTACATTTTAAGTTaGTGTAATGGGCTTCCAGAA +
Preference number: 5 (lower is better)
Translates to: ALHHLMMALHQLPRNLLETYILS*CNGLPE
Trigger: TTCTGGAAGCCCATTACACAAACTTAAAATGTAGGT...CTCCAGAAGGTTCCTGGGAAGCTGGTGCAATGCCATCATGAGGTGGTGCAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS-3UTR CAA 90 bp GCCTGCGTTTTACAAGGGTGCAAAATAACTGAAGTCCATCTCGCAAACCTCTTGTTAGACCGACAACAGTaGAAATCACTCCAGAACACC +
Preference number: 5 (lower is better)
Translates to: ACVLQGCKITEVHLANLLLDRQQ*KSLQNT
Trigger: GGTGTTCTGGAGTGATTTCAACTGTTGTCGGTCTAA...CAAGAGGTTTGCGAGATGGACTTCAGTTATTTTGCACCCTTGTAAAACGCAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS GCA 90 bp CTCTTCTCTTACTCACTGGAGCTTGGGGAGTTGAAGACAGACTTTTaGTTTGGACATGTCTTAATAATCTTTGTAACCATTTGGCACGAG +
Preference number: 5 (lower is better)
Translates to: LFSYSLELGELKTDF*FGHVLIIFVTIWHE
Trigger: CTCGTGCCAAATGGTTACAAAGATTATTAAGACATGTCCAAAGCAAAAGTCTGTCTTCAACTCCCCAAGCTCCAGTGAGTAAGAGAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CCA 90 bp CTCTTACTCACTGGAGCTTGGGGAGTTGAAGACAGACTTTTGCTTTaGACATGTCTTAATAATCTTTGTAACCATTTGGCACGAGGATTC +
Preference number: 5 (lower is better)
Translates to: LLLTGAWGVEDRLLL*TCLNNLCNHLARGF
Trigger: GAATCCTCGTGCCAAATGGTTACAAAGATTATTAAGACATGTCCAAAGCAAAAGTCTGTCTTCAACTCCCCAAGCTCCAGTGAGTAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 90 bp GACCGACAACAGTTGAAATCACTCCAGAACACCTACATTTTAAGTTaGTGTAATGGGCTTCCAGAATACCGTGGCCTGGAGAGAGGCAGC +
Preference number: 6 (lower is better)
Translates to: DRQQLKSLQNTYILS*CNGLPEYRGLERGS
Trigger: GCTGCCTCTCTCCAGGCCACGGTATTCTGGAAGCCCATTACACAAACTTAAAATGTAGGTGTTCTGGAGTGATTTCAACTGTTGTCGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 90 bp TGTAACCATTTGGCACGAGGATTCACACATATAACTTTCTTCATCTaGGTCCAGATCACAACTTCAGTTTTGGGGCAGCCATTCCCAGGG +
Preference number: 6 (lower is better)
Translates to: CNHLARGFTHITFFI*VQITTSVLGQPFPG
Trigger: CCCTGGGAATGGCTGCCCCAAAACTGAAGTTGTGATCTGGACCAAGATGAAGAAAGTTATATGTGTGAATCCTCGTGCCAAATGGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 72 bp CAGTTGAAATCACTCCAGAACACCTACATTTTAAGTTaGTGTAATGGGCTTCCAGAATACCGTGGCCTGGAG +
Preference number: 6 (lower is better)
Translates to: QLKSLQNTYILS*CNGLPEYRGLE
Trigger: CTCCAGGCCACGGTATTCTGGAAGCCCATTACACAAACTTAAAATGTAGGTGTTCTGGAGTGATTTCAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 72 bp TTGGCACGAGGATTCACACATATAACTTTCTTCATCTaGGTCCAGATCACAACTTCAGTTTTGGGGCAGCCA +
Preference number: 6 (lower is better)
Translates to: LARGFTHITFFI*VQITTSVLGQP
Trigger: TGGCTGCCCCAAAACTGAAGTTGTGATCTGGACCAAGATGAAGAAAGTTATATGTGTGAATCCTCGTGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS GCA 72 bp TACTCACTGGAGCTTGGGGAGTTGAAGACAGACTTTTaGTTTGGACATGTCTTAATAATCTTTGTAACCATT +
Preference number: 6 (lower is better)
Translates to: YSLELGELKTDF*FGHVLIIFVTI
Trigger: AATGGTTACAAAGATTATTAAGACATGTCCAAAGCAAAAGTCTGTCTTCAACTCCCCAAGCTCCAGTGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 72 bp TTACTCACTGGAGCTTGGGGAGTTGAAGACAGACTTTaGCTTTGGACATGTCTTAATAATCTTTGTAACCAT +
Preference number: 6 (lower is better)
Translates to: LLTGAWGVEDRL*LWTCLNNLCNH
Trigger: ATGGTTACAAAGATTATTAAGACATGTCCAAAGCAAAAGTCTGTCTTCAACTCCCCAAGCTCCAGTGAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 90 bp GACAGACTTTTGCTTTGGACATGTCTTAATAATCTTTGTAACCATTaGGCACGAGGATTCACACATATAACTTTCTTCATCTTGGTCCAG +
Preference number: 6 (lower is better)
Translates to: DRLLLWTCLNNLCNH*ARGFTHITFFILVQ
Trigger: CTGGACCAAGATGAAGAAAGTTATATGTGTGAATCCTCGTGCCAAATGGTTACAAAGATTATTAAGACATGTCCAAAGCAAAAGTCTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7
CDS CAA 72 bp TTGCTTTGGACATGTCTTAATAATCTTTGTAACCATTaGGCACGAGGATTCACACATATAACTTTCTTCATC +
Preference number: 6 (lower is better)
Translates to: LLWTCLNNLCNH*ARGFTHITFFI
Trigger: GATGAAGAAAGTTATATGTGTGAATCCTCGTGCCAAATGGTTACAAAGATTATTAAGACATGTCCAAAGCAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023840.7