Pregenerated sensors for CXCL11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060183Ensembl transcript IDs: ENSMUST00000077820.6, ENSMUST00000122808.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTATCGGACCTTCTAGAAAGTTCTGCAGCCTGGTAATACGTGGCTaGATGTTCCAAGACAGCAGAGGGTCAGGTTCCTGGCACAGAGTT | + |
|
Preference number: 1 (lower is better) Translates to: CIGPSRKFCSLVIRG*MFQDSRGSGSWHRV Trigger: AACTCTGTGCCAGGAACCTGACCCTCTGCTGTCTTGGAACATGCAGCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGGTCCGATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR GCA 90 bp | TCCTGGTCTGTAGACCAGGTTGGCCTTGAACTCAAGAGATCCTCCTaGCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACA | + |
|
Preference number: 1 (lower is better) Translates to: SWSVDQVGLELKRSS*LCLSSAEIKVYTTT Trigger: TGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATCTCTTGAGTTCAAGGCCAACCTGGTCTACAGACCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR GCA 90 bp | AGCCAAGTAGAACAGTTTAGATGTATCGGACCTTCTAGAAAGTTCTaGAGCCTGGTAATACGTGGCTGCATGTTCCAAGACAGCAGAGGG | + |
|
Preference number: 1 (lower is better) Translates to: SQVEQFRCIGPSRKF*SLVIRGCMFQDSRG Trigger: CCCTCTGCTGTCTTGGAACATGCAGCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGGTCCGATACATCTAAACTGTTCTACTTGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR TCA 90 bp | AATACACATCTTAACCCCTTAGAAGGCCTCAGGGGGAAGCCAGTGTaGCTAGCTAGGAAACAAACAGTAGTGTTCTTACTAGTTTCTACA | + |
|
Preference number: 1 (lower is better) Translates to: NTHLNPLEGLRGKPV*LARKQTVVFLLVST Trigger: TGTAGAAACTAGTAAGAACACTACTGTTTGTTTCCTAGCTAGTCACACTGGCTTCCCCCTGAGGCCTTCTAAGGGGTTAAGATGTGTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR CCA 90 bp | GATCCTCCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACAAGACCAGTCTGGCCTaGACCTCACAGAGATCCGCC | + |
|
Preference number: 2 (lower is better) Translates to: DPPASAFQVLKLRCIPPHKTSLA*TSQRSA Trigger: GGCGGATCTCTGTGAGGTCCAGGCCAGACTGGTCTT...GTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCTAGGTACACAGAGATGCTTTTaGATCCAGCACTGGTCCGGA | + |
|
Preference number: 2 (lower is better) Translates to: PASAFQVLKLRCIPPHLGTQRCF*IQHWSG Trigger: TCCGGACCAGTGCTGGATTCAAAAGCATCTCTGTGT...ACCTAGGTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR GCA 90 bp | GATCCTCCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCTGGTAATACGTGGCTaGATGTTCCAAGACAGCAGA | + |
|
Preference number: 2 (lower is better) Translates to: DPPASAFQVLKLRCIPPHLVIRG*MFQDSR Trigger: TCTGCTGTCTTGGAACATGCAGCCACGTATTACCAG...GTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCTAGGTCCTTCTAGAAAGTTCTaGAGCCTGGTAATACGTGGC | + |
|
Preference number: 2 (lower is better) Translates to: PASAFQVLKLRCIPPHLGPSRKF*SLVIRG Trigger: GCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGG...ACCTAGGTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCTAGGTAGCACTGGTCCGGATTaGAGTAACAATGCATCCACT | + |
|
Preference number: 2 (lower is better) Translates to: PASAFQVLKLRCIPPHLGSTGPD*SNNAST Trigger: AGTGGATGCATTGTTACTGCAATCCGGACCAGTGCT...ACCTAGGTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGAGATCCTCCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCCCACAGAAGGTAGCGTaGAGTGTGCACGTGACTTTT | + |
|
Preference number: 2 (lower is better) Translates to: KRSSCLCLSSAEIKVYTTPQKVA*SVHVTF Trigger: AAAAGTCACGTGCACACTCCACGCTACCTTCTGTGG...GGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCTAGGTTCACAGGAAACAGACTaGAAGAGGTGCACAGATTTT | + |
|
Preference number: 2 (lower is better) Translates to: PASAFQVLKLRCIPPHLGSQETD*KRCTDF Trigger: AAAATCTGTGCACCTCTTTCAGTCTGTTTCCTGTGA...ACCTAGGTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR TCA 90 bp | ACTACACACAGAGATGCTTTTGAATCCAGCACTGGTCCGGATTGCAGTAACAATCGTGGAGTGTGCACGTaGCTTTTAGAGACAAATATT | + |
|
Preference number: 2 (lower is better) Translates to: TTHRDAFESSTGPDCSNNRGVCT*LLETNI Trigger: AATATTTGTCTCTAAAAGTCACGTGCACACTCCACG...ATTGTTACTGCAATCCGGACCAGTGCTGGATTCAAAAGCATCTCTGTGTGTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCTAGGTCATTCATTCACAGTATaGCCAAGGAAAAGAACAAAG | + |
|
Preference number: 2 (lower is better) Translates to: PASAFQVLKLRCIPPHLGHSFTV*PRKRTK Trigger: CTTTGTTCTTTTCCTTGGTCATACTGTGAATGAATG...ACCTAGGTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR CCA 90 bp | GATCCTCCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACGTGCCTCGTGATATTTaGGGAAAGGAATGTTTATTT | + |
|
Preference number: 2 (lower is better) Translates to: DPPASAFQVLKLRCIPPHVPRDI*GKECLF Trigger: AAATAAACATTCCTTTCCCCAAATATCACGAGGCAC...GTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR TCA 90 bp | GCCTCCCAAGTGCTGGGATTAAAGGCGTGTATGTTTCTAAAGAATTCTGACAAACGTGGAGTGTGCACGTaGCTTTTAGAGACAAATATT | + |
|
Preference number: 2 (lower is better) Translates to: ASQVLGLKACMFLKNSDKRGVCT*LLETNI Trigger: AATATTTGTCTCTAAAAGTCACGTGCACACTCCACG...TTTGTCAGAATTCTTTAGAAACATACACGCCTTTAATCCCAGCACTTGGGAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR GCA 90 bp | ATTGTCACTGATAAAACCAGACGTACAGGAAATACACATCTTAACCCCTTAGAACCTTCTAGAAAGTTCTaGAGCCTGGTAATACGTGGC | + |
|
Preference number: 2 (lower is better) Translates to: IVTDKTRRTGNTHLNPLEPSRKF*SLVIRG Trigger: GCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGG...TTCTAAGGGGTTAAGATGTGTATTTCCTGTACGTCTGGTTTTATCAGTGACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR CCA 72 bp | GGCTGCATGTTCCAAGACAGCAGAGGGTCAGGTTCCTaGCACAGAGTTCTTATTGGAGGGCTCACAGTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: GCMFQDSRGSGS*HRVLIGGLTVR Trigger: TCTGACTGTGAGCCCTCCAATAAGAACTCTGTGCCAGGAACCTGACCCTCTGCTGTCTTGGAACATGCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR TCA 72 bp | GTCCTGAAACTCCTGGTCTGTAGACCAGGTTGGCCTTaGACTCAAGAGATCCTCCTGCCTCTGCCTTTCAAG | + |
|
Preference number: 3 (lower is better) Translates to: VLKLLVCRPGWP*TQEILLPLPFK Trigger: CTTGAAAGGCAGAGGCAGGAGGATCTCTTGAGTTCAAGGCCAACCTGGTCTACAGACCAGGAGTTTCAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR GCA 72 bp | CCTTCTAGAAAGTTCTGCAGCCTGGTAATACGTGGCTaGATGTTCCAAGACAGCAGAGGGTCAGGTTCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: PSRKFCSLVIRG*MFQDSRGSGSW Trigger: CCAGGAACCTGACCCTCTGCTGTCTTGGAACATGCAGCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR-3UTR CAA 90 bp | GATCCTCCTGCCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTATACCACCACACCACACAGAGATGCTTTaGAATCCAGCACTGGTCCGG | + |
|
Preference number: 3 (lower is better) Translates to: DPPASAFQVLKLRCIPPHHTEML*NPALVR Trigger: CCGGACCAGTGCTGGATTCAAAAGCATCTCTGTGTG...GTGTGGTGGTATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR TCA 72 bp | CTTAACCCCTTAGAAGGCCTCAGGGGGAAGCCAGTGTaGCTAGCTAGGAAACAAACAGTAGTGTTCTTACTA | + |
|
Preference number: 3 (lower is better) Translates to: LNPLEGLRGKPV*LARKQTVVFLL Trigger: TAGTAAGAACACTACTGTTTGTTTCCTAGCTAGTCACACTGGCTTCCCCCTGAGGCCTTCTAAGGGGTTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR GCA 72 bp | CACAGAGATGCTTTTGAATCCAGCACTGGTCCGGATTaGAGTAACAATGCATCCACTGTAACCACAGAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: HRDAFESSTGPD*SNNASTVTTEG Trigger: ACCTTCTGTGGTTACAGTGGATGCATTGTTACTGCAATCCGGACCAGTGCTGGATTCAAAAGCATCTCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR GCA 72 bp | GTAGACCAGGTTGGCCTTGAACTCAAGAGATCCTCCTaGCTCTGCCTTTCAAGTGCTGAAATTAAGGTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: VDQVGLELKRSS*LCLSSAEIKVY Trigger: ATACACCTTAATTTCAGCACTTGAAAGGCAGAGGCAGGAGGATCTCTTGAGTTCAAGGCCAACCTGGTCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| 3UTR GCA 72 bp | GAACAGTTTAGATGTATCGGACCTTCTAGAAAGTTCTaGAGCCTGGTAATACGTGGCTGCATGTTCCAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: EQFRCIGPSRKF*SLVIRGCMFQD Trigger: GTCTTGGAACATGCAGCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGGTCCGATACATCTAAACTGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS-3UTR GCA 90 bp | CGTGGCTGCATGTTCCAAGACAGCAGAGGGTCAGGTTCCTGGCACAGAGTTCTTCTGTGGCCCAGATATTaGAGCCAGGGCTATGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RGCMFQDSRGSGSWHRVLLWPRY*SQGYGC Trigger: ACAGCCATAGCCCTGGCTGCAATATCTGGGCCACAG...AAGAACTCTGTGCCAGGAACCTGACCCTCTGCTGTCTTGGAACATGCAGCCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122808.2 |
||
| CDS-3UTR CCA 90 bp | CCTTCTAGAAAGTTCTGCAGCCTGGTAATACGTGGCTGCATGTTCCAAGACAGCAGCCTTGAGCAGCTGTaGCCCAGATTGCAGCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: PSRKFCSLVIRGCMFQDSSLEQL*PRLQPG Trigger: CCCTGGCTGCAATCTGGGCCACAGCTGCTCAAGGCT...GCTGTCTTGGAACATGCAGCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077820.6 |
||
| CDS-3UTR TCA 90 bp | ACTACACACAGAGATGCTTTTGAATCCAGCACTGGTCCGGATTGCAGTAACAATAACATAAGGAAGCCTTaGGCAGCTGTGGCCCAGATT | + |
|
Preference number: 4 (lower is better) Translates to: TTHRDAFESSTGPDCSNNNIRKP*AAVAQI Trigger: AATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTT...ATTGTTACTGCAATCCGGACCAGTGCTGGATTCAAAAGCATCTCTGTGTGTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077820.6 |
||
| CDS-3UTR TCA 90 bp | CAAGTAGAACAGTTTAGATGTATCGGACCTTCTAGAAAGTTCTGCAGCCTGGTAAACATAAGGAAGCCTTaGGCAGCTGTGGCCCAGATA | + |
|
Preference number: 4 (lower is better) Translates to: QVEQFRCIGPSRKFCSLVNIRKP*AAVAQI Trigger: TATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTT...TACCAGGCTGCAGAACTTTCTAGAAGGTCCGATACATCTAAACTGTTCTACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122808.2 |
||
| CDS-3UTR CAA 90 bp | CAGCAGAGGGTCAGGTTCCTGGCACAGAGTTCTTATTGGAGGGCTCACAGTCAGATGAGGCGAGCTTGCTaGGATCTGGGGTCCAGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: QQRVRFLAQSSYWRAHSQMRRAC*DLGSRH Trigger: GTGCCTGGACCCCAGATCCAAGCAAGCTCGCCTCAT...CTGACTGTGAGCCCTCCAATAAGAACTCTGTGCCAGGAACCTGACCCTCTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS-3UTR CAA 90 bp | CCAAGACAGCAGAGGGTCAGGTTCCTGGCACAGAGTTCTTATTGGAGGGCTCACGGGGTCCAGGCACCTTaGTCGTTTATGAGCCTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: PRQQRVRFLAQSSYWRAHGVQAP*SFMSLH Trigger: ATGAAGGCTCATAAACGACAAAGGTGCCTGGACCCC...GTGAGCCCTCCAATAAGAACTCTGTGCCAGGAACCTGACCCTCTGCTGTCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS GCA 90 bp | GTCGCAGCCGTTACTCGGGTAAATTACAGAAGCTTTCTCGATCTCTaGCATTTTGACGGCTTTCATCCCGGGGCCGATGCAAAGACAGCG | + |
|
Preference number: 5 (lower is better) Translates to: VAAVTRVNYRSFLDL*HFDGFHPGADAKTA Trigger: CGCTGTCTTTGCATCGGCCCCGGGATGAAAGCCGTCAAAATGGCAGAGATCGAGAAAGCTTCTGTAATTTACCCGAGTAACGGCTGCGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS-3UTR CAA 90 bp | CCTTCTAGAAAGTTCTGCAGCCTGGTAATACGTGGCTGCATGTTCCAAGACAGCGAACATAAGGAAGCCTaGAGCAGCTGTGGCCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: PSRKFCSLVIRGCMFQDSEHKEA*SSCGPD Trigger: ATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTTC...GCTGTCTTGGAACATGCAGCCACGTATTACCAGGCTGCAGAACTTTCTAGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS-3UTR CAA 90 bp | CAAGTAGAACAGTTTAGATGTATCGGACCTTCTAGAAAGTTCTGCAGCCTGGTAGCTGTGGCCCAGATATaGCAGCCAGGGCTATGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: QVEQFRCIGPSRKFCSLVAVAQI*QPGLWL Trigger: CAGCCATAGCCCTGGCTGCAATATCTGGGCCACAGC...TACCAGGCTGCAGAACTTTCTAGAAGGTCCGATACATCTAAACTGTTCTACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122808.2 |
||
| CDS TCA 90 bp | AGGCGAGCTTGCTTGGATCTGGGGTCCAGGCACCTTTGTCGTTTATaGGCCTTCATAGTAACAATCACTTCAACTTTGTCGCAGCCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: RRACLDLGSRHLCRL*AFIVTITSTLSQPL Trigger: TAACGGCTGCGACAAAGTTGAAGTGATTGTTACTATGAAGGCTCATAAACGACAAAGGTGCCTGGACCCCAGATCCAAGCAAGCTCGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS-3UTR CAA 90 bp | CCATCCCTACCATTCATTCACAGTATGACCAAGGAAAAGAACAAAGTACATATTCAGCTGTGGCCCAGATaGCAGCCAGGGCTATGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: PSLPFIHSMTKEKNKVHIQLWPR*QPGLWL Trigger: CAGCCATAGCCCTGGCTGCAATCTGGGCCACAGCTG...AATATGTACTTTGTTCTTTTCCTTGGTCATACTGTGAATGAATGGTAGGGATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077820.6 |
||
| CDS-3UTR CAA 90 bp | GCCTCCCAAGTGCTGGGATTAAAGGCGTGTATGTTTCTAAAGAATTCTGACAAAGAACATAAGGAAGCCTaGAGCAGCTGTGGCCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: ASQVLGLKACMFLKNSDKEHKEA*SSCGPD Trigger: ATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTTC...TTTGTCAGAATTCTTTAGAAACATACACGCCTTTAATCCCAGCACTTGGGAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS CAA 90 bp | GGGGCCGATGCAAAGACAGCGCCCCTGTTTGAACATAAGGAAGCCTaGAGCAGCTGTGGCCCAGATATTGCAGCCAGGGCTATGGCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: GADAKTAPLFEHKEA*SSCGPDIAARAMAV Trigger: CACAGCCATAGCCCTGGCTGCAATATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTTCAAACAGGGGCGCTGTCTTTGCATCGGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122808.2 |
||
| CDS CAA 72 bp | GCAAAGACAGCGCCCCTGTTTGAACATAAGGAAGCCTaGAGCAGCTGTGGCCCAGATATTGCAGCCAGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: AKTAPLFEHKEA*SSCGPDIAARA Trigger: AGCCCTGGCTGCAATATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTTCAAACAGGGGCGCTGTCTTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122808.2 |
||
| CDS GCA 72 bp | GAACATAAGGAAGCCTTGAGCAGCTGTGGCCCAGATTaGAGCCAGGGCTATGGCTGTGACCTTCCTGTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: EHKEALSSCGPD*SQGYGCDLPVH Trigger: ATGAACAGGAAGGTCACAGCCATAGCCCTGGCTGCAATCTGGGCCACAGCTGCTCAAGGCTTCCTTATGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077820.6 |
||
| CDS TCA 72 bp | GGTAAATTACAGAAGCTTTCTCGATCTCTGCCATTTTaGCGGCTTTCATCCCGGGGCCGATGCAAAGACAGC | + |
|
Preference number: 6 (lower is better) Translates to: GKLQKLSRSLPF*RLSSRGRCKDS Trigger: GCTGTCTTTGCATCGGCCCCGGGATGAAAGCCGTCAAAATGGCAGAGATCGAGAAAGCTTCTGTAATTTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS GCA 72 bp | GTTACTCGGGTAAATTACAGAAGCTTTCTCGATCTCTaGCATTTTGACGGCTTTCATCCCGGGGCCGATGCA | + |
|
Preference number: 6 (lower is better) Translates to: VTRVNYRSFLDL*HFDGFHPGADA Trigger: TGCATCGGCCCCGGGATGAAAGCCGTCAAAATGGCAGAGATCGAGAAAGCTTCTGTAATTTACCCGAGTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS CAA 72 bp | GAGGCGAGCTTGCTTGGATCTGGGGTCCAGGCACCTTaGTCGTTTATGAGCCTTCATAGTAACAATCACTTC | + |
|
Preference number: 6 (lower is better) Translates to: EASLLGSGVQAP*SFMSLHSNNHF Trigger: GAAGTGATTGTTACTATGAAGGCTCATAAACGACAAAGGTGCCTGGACCCCAGATCCAAGCAAGCTCGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS CAA 90 bp | CTGCATTATGAGGCGAGCTTGCTTGGATCTGGGGTCCAGGCACCTTaGTCGTTTATGAGCCTTCATAGTAACAATCACTTCAACTTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: LHYEASLLGSGVQAP*SFMSLHSNNHFNFV Trigger: GACAAAGTTGAAGTGATTGTTACTATGAAGGCTCATAAACGACAAAGGTGCCTGGACCCCAGATCCAAGCAAGCTCGCCTCATAATGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||
| CDS TCA 72 bp | TGCTTGGATCTGGGGTCCAGGCACCTTTGTCGTTTATaGGCCTTCATAGTAACAATCACTTCAACTTTGTCG | + |
|
Preference number: 6 (lower is better) Translates to: CLDLGSRHLCRL*AFIVTITSTLS Trigger: CGACAAAGTTGAAGTGATTGTTACTATGAAGGCTCATAAACGACAAAGGTGCCTGGACCCCAGATCCAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077820.6 ENSMUST00000122808.2 |
||