Pregenerated sensors for CXCL10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034855Ensembl transcript IDs: ENSMUST00000038816.13, ENSMUST00000118006.3
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACGAGCCTGAGCTAGGGAGGACAAGGAGGGTGTGGGGAGCAGCCTaGGCATGGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTA | + |
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Preference number: 1 (lower is better) Translates to: DEPELGRTRRVWGAA*AWHMVKGVAPPHSL Trigger: TAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCCCCACACCCTCCTTGTCCTCCCTAGCTCAGGCTCGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR CCA 90 bp | CCTGAGCTAGGGAGGACAAGGAGGGTGTGGGGAGCAGCCTGGGCATaGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTACAGTAC | + |
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Preference number: 1 (lower is better) Translates to: PELGRTRRVWGAAWA*HMVKGVAPPHSLQY Trigger: GTACTGTAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCCCCACACCCTCCTTGTCCTCCCTAGCTCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR TCA 90 bp | AGACCAAGGGCAATTAGGACTAGCCATCCACTGGGTAAAGGGGAGTaGTGGAGAGAGGCTCTCTGCTGTCCATCCATCGCAGCACCGGGG | + |
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Preference number: 1 (lower is better) Translates to: RPRAIRTSHPLGKGE*WREALCCPSIAAPG Trigger: CCCCGGTGCTGCGATGGATGGACAGCAGAGAGCCTCTCTCCATCACTCCCCTTTACCCAGTGGATGGCTAGTCCTAATTGCCCTTGGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR CCA 90 bp | GGTCACCTTTCAGAAGACCAAGGGCAATTAGGACTAGCCATCCACTaGGTAAAGGGGAGTGATGGAGAGAGGCTCTCTGCTGTCCATCCA | + |
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Preference number: 1 (lower is better) Translates to: GHLSEDQGQLGLAIH*VKGSDGERLSAVHP Trigger: TGGATGGACAGCAGAGAGCCTCTCTCCATCACTCCCCTTTACCCAGTGGATGGCTAGTCCTAATTGCCCTTGGTCTTCTGAAAGGTGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR GCA 90 bp | TTTAGACCTGTAGGAAGAGGAAACTGTATTGAGCGGAATAGACTCTaGTTTCACTTTGGGAACCCAAAGACCCTGGGGCAAAAGGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: FRPVGRGNCIERNRL*FHFGNPKTLGQKAW Trigger: CCAGGCCTTTTGCCCCAGGGTCTTTGGGTTCCCAAAGTGAAAGCAGAGTCTATTCCGCTCAATACAGTTTCCTCTTCCTACAGGTCTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR-3UTR TCA 90 bp | GGAGCAGCCTGGGCATGGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTACTCAGGACCATGGCTTaGCCATCATCCTGCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: GAAWAWHMVKGVAPPHSLLRTMA*PSSCRR Trigger: CCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGAG...TAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR CCA 90 bp | GGACTAGCCATCCACTGGGTAAAGGGGAGTGATGGAGAGAGGCTCTCTGCTGTCGGAGCAGCCTGGGCATaGCACATGGTGAAGGGCGTC | + |
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Preference number: 2 (lower is better) Translates to: GLAIHWVKGSDGERLSAVGAAWA*HMVKGV Trigger: GACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC...GACAGCAGAGAGCCTCTCTCCATCACTCCCCTTTACCCAGTGGATGGCTAGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR CCA 90 bp | GTAAAGGGGAGTGATGGAGAGAGGCTCTCTGCTGTCCATCCATCGCAGCACCGGGTGTGGGGAGCAGCCTaGGCATGGCACATGGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: VKGSDGERLSAVHPSQHRVWGAA*AWHMVK Trigger: CTTCACCATGTGCCATGCCCAGGCTGCTCCCCACAC...CCGGTGCTGCGATGGATGGACAGCAGAGAGCCTCTCTCCATCACTCCCCTTTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR TCA 90 bp | TCAGGACCATGGCTTGACCATCATCCTGCAGGAGGAGTAGCAGCTGATGTGACCCGGGTGGGTGGGGGTTaGGGGGACAGAATGGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: SGPWLDHHPAGGVAADVTRVGGG*GDRMGL Trigger: CAAACCCATTCTGTCCCCTCAACCCCCACCCACCCG...GGTCACATCAGCTGCTACTCCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR-3UTR GCA 90 bp | GGAGCAGCCTGGGCATGGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTATGGAGAGAGGCTCTCTaGTGTCCATCCATCGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: GAAWAWHMVKGVAPPHSLWREAL*CPSIAA Trigger: TGCTGCGATGGATGGACAGCAGAGAGCCTCTCTCCA...TAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR GCA 90 bp | GTCTGTGTAAATGGAGAGACAAAGGCACATGCCGGTGCCATGAGTTTAGGGCAGGCCCAGGGCAGGCGCTaGTCCCCAGACCACCATTTC | + |
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Preference number: 2 (lower is better) Translates to: VCVNGETKAHAGAMSLGQAQGRR*SPDHHF Trigger: GAAATGGTGGTCTGGGGAGCAGCGCCTGCCCTGGGC...CTGCCCTAAACTCATGGCACCGGCATGTGCCTTTGTCTCTCCATTTACACAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR-3UTR CCA 90 bp | GGAGCAGCCTGGGCATGGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTAGGACTAGCCATCCACTaGGTAAAGGGGAGTGATGGA | + |
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Preference number: 2 (lower is better) Translates to: GAAWAWHMVKGVAPPHSLGLAIH*VKGSDG Trigger: TCCATCACTCCCCTTTACCCAGTGGATGGCTAGTCC...TAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR CCA 90 bp | TCAGGTAAACTTAGAACTGACGAGCCTGAGCTAGGGAGGACAAGGAGGGTGTGGGGAGCAGCCTGGGCATaGCACATGGTGAAGGGCGTC | + |
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Preference number: 2 (lower is better) Translates to: SGKLRTDEPELGRTRRVWGAAWA*HMVKGV Trigger: GACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC...CCACACCCTCCTTGTCCTCCCTAGCTCAGGCTCGTCAGTTCTAAGTTTACCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR GCA 90 bp | TCAGGACCATGGCTTGACCATCATCCTGCAGGAGGAGTAGCAGCTGATGTGACCCAGCACCGGGGTGTGTaGGTGGCTTCACTCCAGTTA | + |
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Preference number: 2 (lower is better) Translates to: SGPWLDHHPAGGVAADVTQHRGV*VASLQL Trigger: TAACTGGAGTGAAGCCACGCACACACCCCGGTGCTG...GGTCACATCAGCTGCTACTCCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR-3UTR TCA 90 bp | GATGTGACCACGGCTGGTCACCTTTCAGAAGACCAAGGGCAATTAGGACTAGCCCTGGGTAAAGGGGAGTaGTGGAGAGAGGCTCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: DVTTAGHLSEDQGQLGLALGKGE*WREALC Trigger: GCAGAGAGCCTCTCTCCATCACTCCCCTTTACCCAG...GGCTAGTCCTAATTGCCCTTGGTCTTCTGAAAGGTGACCAGCCGTGGTCACATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR CCA 90 bp | GCAGGAGGAGTAGCAGCTGATGTGACCACGGCTGGTCACCTTTCAGAAGACCAAGGACTAGCCATCCACTaGGTAAAGGGGAGTGATGGA | + |
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Preference number: 2 (lower is better) Translates to: AGGVAADVTTAGHLSEDQGLAIH*VKGSDG Trigger: TCCATCACTCCCCTTTACCCAGTGGATGGCTAGTCC...TTGGTCTTCTGAAAGGTGACCAGCCGTGGTCACATCAGCTGCTACTCCTCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR-3UTR GCA 90 bp | GTCTGTGTAAATGGAGAGACAAAGGCACATGCCGGTGCCATGAGTTTAGGGCAGTGGAGAGAGGCTCTCTaGTGTCCATCCATCGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: VCVNGETKAHAGAMSLGQWREAL*CPSIAA Trigger: TGCTGCGATGGATGGACAGCAGAGAGCCTCTCTCCA...CTGCCCTAAACTCATGGCACCGGCATGTGCCTTTGTCTCTCCATTTACACAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR CCA 72 bp | GGGAGGACAAGGAGGGTGTGGGGAGCAGCCTGGGCATaGCACATGGTGAAGGGCGTCGCACCTCCACATAGC | + |
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Preference number: 3 (lower is better) Translates to: GRTRRVWGAAWA*HMVKGVAPPHS Trigger: GCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCCCCACACCCTCCTTGTCCTCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR GCA 72 bp | CTCTCTGCTGTCCATCCATCGCAGCACCGGGGTGTGTaGGTGGCTTCACTCCAGTTAAGGAGCCCTTTTAGA | + |
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Preference number: 3 (lower is better) Translates to: LSAVHPSQHRGV*VASLQLRSPFR Trigger: TCTAAAAGGGCTCCTTAACTGGAGTGAAGCCACGCACACACCCCGGTGCTGCGATGGATGGACAGCAGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR-3UTR CAA 90 bp | TCAGGACCATGGCTTGACCATCATCCTGCAGGAGGAGTAGCAGCTGATGTGACCTCTCAGGACCATGGCTaGACCATCATCCTGCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: SGPWLDHHPAGGVAADVTSQDHG*TIILQE Trigger: CTCCTGCAGGATGATGGTCAAGCCATGGTCCTGAGA...GGTCACATCAGCTGCTACTCCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR GCA 72 bp | CCTCAGTGTCTGTGTAAATGGAGAGACAAAGGCACATaGCGGTGCCATGAGTTTAGGGCAGATGCCCCACAG | + |
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Preference number: 3 (lower is better) Translates to: PQCLCKWRDKGT*RCHEFRADAPQ Trigger: CTGTGGGGCATCTGCCCTAAACTCATGGCACCGGCATGTGCCTTTGTCTCTCCATTTACACAGACACTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR CCA 72 bp | TCCTCTGCTACACAATCTCCATGGGTCACGGGTGGGTaGGGGTTGAGGGGACAGAATGGGTTTGTGTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: SSATQSPWVTGG*GLRGQNGFVCF Trigger: AAAACACACAAACCCATTCTGTCCCCTCAACCCCCACCCACCCGTGACCCATGGAGATTGTGTAGCAGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR GCA 72 bp | TGTCTGTGTAAATGGAGAGACAAAGGCACATGCCGGTaGCATGAGTTTAGGGCAGATGCCCCACAGCAAAGC | + |
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Preference number: 3 (lower is better) Translates to: CLCKWRDKGTCR*HEFRADAPQQS Trigger: GCTTTGCTGTGGGGCATCTGCCCTAAACTCATGGCACCGGCATGTGCCTTTGTCTCTCCATTTACACAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118006.3 |
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| 3UTR CCA 72 bp | TCAGAAGACCAAGGGCAATTAGGACTAGCCATCCACTaGGTAAAGGGGAGTGATGGAGAGAGGCTCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: SEDQGQLGLAIH*VKGSDGERLSA Trigger: AGCAGAGAGCCTCTCTCCATCACTCCCCTTTACCCAGTGGATGGCTAGTCCTAATTGCCCTTGGTCTTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| 3UTR CCA 72 bp | ATTCTTGCTTCGGCAGTTACTTTTGTCTCAGGACCATaGCTTGACCATCATCCTGCAGGAGGAGTAGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: ILASAVTFVSGP*LDHHPAGGVAA Trigger: AGCTGCTACTCCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGAGACAAAAGTAACTGCCGAAGCAAGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR CCA 90 bp | GGAGCAGCCTGGGCATGGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTAGGCCCGTCATCGATATaGATGCAGTTGCAGCGGACC | + |
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Preference number: 4 (lower is better) Translates to: GAAWAWHMVKGVAPPHSLGPSSI*MQLQRT Trigger: GGTCCGCTGCAACTGCATCCATATCGATGACGGGCC...TAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR GCA 90 bp | TCAGGACCATGGCTTGACCATCATCCTGCAGGAGGAGTAGCAGCTGATGTGACCGCAGCGGACCGTCCTTaGGAGAGGGATCCCTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: SGPWLDHHPAGGVAADVTAADRP*ERDPLS Trigger: ACTCAAGGGATCCCTCTCGCAAGGACGGTCCGCTGC...GGTCACATCAGCTGCTACTCCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR CCA 90 bp | GGAGGAGTAGCAGCTGATGTGACCACGGCTGGTCACCTTTCAGAAGACCAAGGGGGCCCGTCATCGATATaGATGCAGTTGCAGCGGACC | + |
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Preference number: 4 (lower is better) Translates to: GGVAADVTTAGHLSEDQGGPSSI*MQLQRT Trigger: GGTCCGCTGCAACTGCATCCATATCGATGACGGGCC...CCCTTGGTCTTCTGAAAGGTGACCAGCCGTGGTCACATCAGCTGCTACTCCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR GCA 90 bp | TCAGGTAAACTTAGAACTGACGAGCCTGAGCTAGGGAGGACAAGGAGGGTGTGGGCAGCGGACCGTCCTTaGGAGAGGGATCCCTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: SGKLRTDEPELGRTRRVWAADRP*ERDPLS Trigger: ACTCAAGGGATCCCTCTCGCAAGGACGGTCCGCTGC...CCACACCCTCCTTGTCCTCCCTAGCTCAGGCTCGTCAGTTCTAAGTTTACCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR CCA 90 bp | GGAGCAGCCTGGGCATGGCACATGGTGAAGGGCGTCGCACCTCCACATAGCTTATTTCAAGCTTCCCTATaGCCCTCATTCTCACTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GAAWAWHMVKGVAPPHSLFQASL*PSFSLA Trigger: GGCCAGTGAGAATGAGGGCCATAGGGAAGCTTGAAA...TAAGCTATGTGGAGGTGCGACGCCCTTCACCATGTGCCATGCCCAGGCTGCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR CCA 90 bp | TCAGGACCATGGCTTGACCATCATCCTGCAGGAGGAGTAGCAGCTGATGTGACCTTTCAAGCTTCCCTATaGCCCTCATTCTCACTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SGPWLDHHPAGGVAADVTFQASL*PSFSLA Trigger: GGCCAGTGAGAATGAGGGCCATAGGGAAGCTTGAAA...GGTCACATCAGCTGCTACTCCTCCTGCAGGATGATGGTCAAGCCATGGTCCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR CAA 90 bp | GCAGGAGGAGTAGCAGCTGATGTGACCACGGCTGGTCACCTTTCAGAAGACCAAGCTTTCATTAAATTCTaGATGGTCTTAGATTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: AGGVAADVTTAGHLSEDQAFIKF*MVLDSG Trigger: TCCGGAATCTAAGACCATCAAGAATTTAATGAAAGC...TTGGTCTTCTGAAAGGTGACCAGCCGTGGTCACATCAGCTGCTACTCCTCCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS GCA 90 bp | TTCATTAAATTCTTGATGGTCTTAGATTCCGGATTCAGACATCTCTaGTCATCATTCTTTTTCATCGTGGCAATGATCTCAACACGTGGG | + |
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Preference number: 5 (lower is better) Translates to: FIKFLMVLDSGFRHL*SSFFFIVAMISTRG Trigger: CCCACGTGTTGAGATCATTGCCACGATGAAAAAGAATGATGAGCAGAGATGTCTGAATCCGGAATCTAAGACCATCAAGAATTTAATGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS-3UTR CAA 90 bp | CACATACATTTTCAGGTTCCTCTGAGTATCTTGATAACCCCTTGGGAAGATGGTGCTTTCATTAAATTCTaGATGGTCTTAGATTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: HIHFQVPLSILITPWEDGAFIKF*MVLDSG Trigger: TCCGGAATCTAAGACCATCAAGAATTTAATGAAAGC...ACCATCTTCCCAAGGGGTTATCAAGATACTCAGAGGAACCTGAAAATGTATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS TCA 72 bp | GACATCTCTGCTCATCATTCTTTTTCATCGTGGCAATaGTCTCAACACGTGGGCAGGATAGGCTCGCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: DISAHHSFSSWQ*SQHVGRIGSQG Trigger: TCCCTGCGAGCCTATCCTGCCCACGTGTTGAGATCATTGCCACGATGAAAAAGAATGATGAGCAGAGATGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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| CDS GCA 72 bp | TTCTTGATGGTCTTAGATTCCGGATTCAGACATCTCTaGTCATCATTCTTTTTCATCGTGGCAATGATCTCA | + |
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Preference number: 6 (lower is better) Translates to: FLMVLDSGFRHL*SSFFFIVAMIS Trigger: TGAGATCATTGCCACGATGAAAAAGAATGATGAGCAGAGATGTCTGAATCCGGAATCTAAGACCATCAAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038816.13 ENSMUST00000118006.3 |
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