Pregenerated sensors for CXCL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029380Ensembl transcript IDs: ENSMUST00000031327.9
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCTCTCTGCACTTCTTTTCGCACAACACCCTTCTACTAGCACAGTaGTTGACACTTAGTGGTCTCCCAATAAATATTAGTTTAATGAAA | + |
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Preference number: 1 (lower is better) Translates to: ISLHFFSHNTLLLAQ*LTLSGLPINISLMK Trigger: TTTCATTAAACTAATATTTATTGGGAGACCACTAAGTGTCAACCACTGTGCTAGTAGAAGGGTGTTGTGCGAAAAGAAGTGCAGAGAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR-3UTR TCA 90 bp | CCCGAGCGAGACGAGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGCATTACTGAACAAGCAGAACTaGACTACCATCGATGAAATG | + |
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Preference number: 2 (lower is better) Translates to: PERDETRRNRVKECKRALLNKQN*TTIDEM Trigger: CATTTCATCGATGGTAGTTCAGTTCTGCTTGTTCAG...TAATGCCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCTCGTCTCGCTCGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR-3UTR CCA 90 bp | ACACAGCCTCCCACACATGTCCTCACCCTAATACATACAAAACATAATACTAAACTTCTACTAGCACAGTaGTTGACACTTAGTGGTCTC | + |
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Preference number: 2 (lower is better) Translates to: TQPPTHVLTLIHTKHNTKLLLAQ*LTLSGL Trigger: GAGACCACTAAGTGTCAACCACTGTGCTAGTAGAAG...TTTAGTATTATGTTTTGTATGTATTAGGGTGAGGACATGTGTGGGAGGCTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR CAA 90 bp | TCTCTGCACTTCTTTTCGCACAACACCCTTCTACTAGCACAGTGGTaGACACTTAGTGGTCTCCCAATAAATATTAGTTTAATGAAATAT | + |
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Preference number: 2 (lower is better) Translates to: SLHFFSHNTLLLAQW*TLSGLPINISLMKY Trigger: ATATTTCATTAAACTAATATTTATTGGGAGACCACTAAGTGTCAACCACTGTGCTAGTAGAAGGGTGTTGTGCGAAAAGAAGTGCAGAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR-3UTR CAA 90 bp | TCTGTCCCGAGCGAGACGAGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGGACCCTCAAAAGAAATaGTATAGTGTTGTCAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: SVPSETRPGETGLKNVKGDPQKK*YSVVRS Trigger: GCTTCTGACAACACTATACAATTTCTTTTGAGGGTC...CCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCTCGTCTCGCTCGGGACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR-3UTR CAA 90 bp | AGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGCATTATGCCCTACCAACTAGAAATTGTATAGTGTaGTCAGAAGCCAGCGTTCAC | + |
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Preference number: 3 (lower is better) Translates to: RPGETGLKNVKGHYALPTRNCIV*SEASVH Trigger: GTGAACGCTGGCTTCTGACAACACTATACAATTTCT...AGTTGGTAGGGCATAATGCCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR CCA 72 bp | CACTTCTTTTCGCACAACACCCTTCTACTAGCACAGTaGTTGACACTTAGTGGTCTCCCAATAAATATTAGT | + |
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Preference number: 3 (lower is better) Translates to: HFFSHNTLLLAQ*LTLSGLPINIS Trigger: ACTAATATTTATTGGGAGACCACTAAGTGTCAACCACTGTGCTAGTAGAAGGGTGTTGTGCGAAAAGAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| 3UTR TCA 72 bp | ACCATACAATATGAAAGACGACTTTCAATAAATAACTaGCATTCTTTTCAAGACATACAAACACAGCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: TIQYERRLSINN*HSFQDIQTQPP Trigger: GGGAGGCTGTGTTTGTATGTCTTGAAAAGAATGTCAGTTATTTATTGAAAGTCGTCTTTCATATTGTATGGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS-3UTR CCA 90 bp | CCCGAGCGAGACGAGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGCATTATGGCCAGGCGGCTGGTaGCCAGCAGCAGCAGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: PERDETRRNRVKECKRALWPGGW*PAAAAL Trigger: CAGCGCTGCTGCTGCTGGCCACCAGCCGCCTGGCCA...TAATGCCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCTCGTCTCGCTCGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS-3UTR TCA 90 bp | ACGAGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGCATTATGCCCTACCAGGTGCAGTGGGGCCCTaGGGGCAACACCTTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: TRPGETGLKNVKGHYALPGAVGP*GQHLQA Trigger: AGCTTGAAGGTGTTGCCCTCAGGGCCCCACTGCACC...TGGTAGGGCATAATGCCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCTCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS-3UTR GCA 90 bp | AGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGCATTATGCCCTACCAACTCAGCAGCAGCAGCGCTaGACAGAGAAGCGAGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: RPGETGLKNVKGHYALPTQQQQR*TEKRAG Trigger: ACCCGCTCGCTTCTCTGTGCAGCGCTGCTGCTGCTG...AGTTGGTAGGGCATAATGCCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS-3UTR TCA 90 bp | AGACCAGGAGAAACAGGGTTAAAGAATGTAAAAGGGCATTATGCCCTACCAACTATGGTCTGCAGGCACTaGCAGCGCAGCTCATTGGCG | + |
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Preference number: 4 (lower is better) Translates to: RPGETGLKNVKGHYALPTMVCRH*QRSSLA Trigger: CGCCAATGAGCTGCGCTGTCAGTGCCTGCAGACCAT...AGTTGGTAGGGCATAATGCCCTTTTACATTCTTTAACCCTGTTTCTCCTGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS-3UTR TCA 90 bp | AGAAGCCAGCGTTCACCAGACAGGTGCCATCAGAGCAGTCTGTCTTCTTTCTCCTTTTGGACAATTTTCTaGACCAAGGGAGCTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: RSQRSPDRCHQSSLSSFSFWTIF*TKGASG Trigger: CCCTGAAGCTCCCTTGGTTCAGAAAATTGTCCAAAA...GGAGAAAGAAGACAGACTGCTCTGATGGCACCTGTCTGGTGAACGCTGGCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS-3UTR CCA 90 bp | ACAGGGTTAAAGAATGTAAAAGGGCATTATGCCCTACCAACTAGACACAAAATGTCGGTTTGGGTGCAGTaGGGCCCTGAGGGCAACACC | + |
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Preference number: 4 (lower is better) Translates to: TGLKNVKGHYALPTRHKMSVWVQ*GPEGNT Trigger: GGTGTTGCCCTCAGGGCCCCACTGCACCCAAACCGA...CATTTTGTGTCTAGTTGGTAGGGCATAATGCCCTTTTACATTCTTTAACCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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| CDS CAA 72 bp | GGAGCTTCAGGGTCAAGGCAAGCCTCGCGACCATTCTaGAGTGTGGCTATGACTTCGGTTTGGGTGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: GASGSRQASRPF*SVAMTSVWVQW Trigger: CCACTGCACCCAAACCGAAGTCATAGCCACACTCAAGAATGGTCGCGAGGCTTGCCTTGACCCTGAAGCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031327.9 |
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