Pregenerated sensors for CXADR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022865Ensembl transcript IDs: ENSMUST00000023572.15, ENSMUST00000114229.4, ENSMUST00000231251.2, ENSMUST00000231356.2, ENSMUST00000232148.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTACAGACCCATAAATCTGCCACCCTCACCCTGCCTGCTCAGGATTaGAGCAGTCCACAGGCCCCGAGCGAGGCACAGACACTGTCCTCA | + |
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Preference number: 1 (lower is better) Translates to: LQTHKSATLTLPAQD*SSPQAPSEAQTLSS Trigger: TGAGGACAGTGTCTGTGCCTCGCTCGGGGCCTGTGGACTGCTGCAATCCTGAGCAGGCAGGGTGAGGGTGGCAGATTTATGGGTCTGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR CCA 90 bp | GAGAGGCAGGTGCGGCCACGGGCCAGCAAGCACATTGCTCAAGTCTaGAATTCAGGACCAGGGAAGACACTTAACTTGCCTCAAATCTCT | + |
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Preference number: 1 (lower is better) Translates to: ERQVRPRASKHIAQV*NSGPGKTLNLPQIS Trigger: AGAGATTTGAGGCAAGTTAAGTGTCTTCCCTGGTCCTGAATTCCAGACTTGAGCAATGTGCTTGCTGGCCCGTGGCCGCACCTGCCTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR TCA 90 bp | GTACCGGTTAAATGCTTAGGAAACTGTTCTACAGCCATACAGCCTTaGGAGCCCAGCATTCAGGGAGCAGAAGGATCAGGATTTGAGGCC | + |
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Preference number: 1 (lower is better) Translates to: VPVKCLGNCSTAIQP*EPSIQGAEGSGFEA Trigger: GGCCTCAAATCCTGATCCTTCTGCTCCCTGAATGCTGGGCTCTCAAGGCTGTATGGCTGTAGAACAGTTTCCTAAGCATTTAACCGGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR GCA 90 bp | TGTAGCGGACGCTTCTTTTGTAGTGCACTAAAGCTTCCTGCTTCCTaGTACCTCTGTAGTGTACCGGTTAAATGCTTAGGAAACTGTTCT | + |
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Preference number: 1 (lower is better) Translates to: CSGRFFCSALKLPAS*YLCSVPVKCLGNCS Trigger: AGAACAGTTTCCTAAGCATTTAACCGGTACACTACAGAGGTAGCAGGAAGCAGGAAGCTTTAGTGCACTACAAAAGAAGCGTCCGCTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR GCA 90 bp | GTGCCTCTGAGTTCAGGGATCATAGATGATGTGCACAGTCACATGTaGCAGAAATTAGGCATTTCCATAGTCTATATGGATCTTCCCCAC | + |
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Preference number: 1 (lower is better) Translates to: VPLSSGIIDDVHSHM*QKLGISIVYMDLPH Trigger: GTGGGGAAGATCCATATAGACTATGGAAATGCCTAATTTCTGGCACATGTGACTGTGCACATCATCTATGATCCCTGAACTCAGAGGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR-3UTR CCA 90 bp | CACCCTCACCCTGCCTGCTCAGGATTGCAGCAGTCCACAGGCCCCGAGCGAGGCCCCAAATTTTCCAGATaGTCAATGCTATTACTCTTA | + |
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Preference number: 2 (lower is better) Translates to: HPHPACSGLQQSTGPERGPKFSR*SMLLLL Trigger: TAAGAGTAATAGCATTGACCATCTGGAAAATTTGGG...GCCTCGCTCGGGGCCTGTGGACTGCTGCAATCCTGAGCAGGCAGGGTGAGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR-3UTR TCA 90 bp | GAAAGCAGATGTGTTCCTGTAGCCACTGTTAACCCGCCTTGTAAACTGGATGTACTGAAATCCCATAACTaGGAGGCTGAGGCAGACAAC | + |
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Preference number: 2 (lower is better) Translates to: ESRCVPVATVNPPCKLDVLKSHN*EAEADN Trigger: GTTGTCTGCCTCAGCCTCTCAGTTATGGGATTTCAG...TACATCCAGTTTACAAGGCGGGTTAACAGTGGCTACAGGAACACATCTGCTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| 3UTR-3UTR TCA 90 bp | GATAGGCTGAAGTCAAAGAAAATGAAAAGGTTTAATTCCCAGGGAGTGCAGGGGAGACTGGAAGCTCCCTaGCCTAATTACCTAAAAGCC | + |
|
Preference number: 2 (lower is better) Translates to: DRLKSKKMKRFNSQGVQGRLEAP*PNYLKA Trigger: GGCTTTTAGGTAATTAGGTCAGGGAGCTTCCAGTCT...CCCCTGCACTCCCTGGGAATTAAACCTTTTCATTTTCTTTGACTTCAGCCTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCTTTTTGCCCATTCTAGAGAAAATGCTGTACTACTGAGTCCAGTCTCTCGGCACATTGCTCAAGTCTaGAATTCAGGACCAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: ILFAHSRENAVLLSPVSRHIAQV*NSGPGK Trigger: CTTCCCTGGTCCTGAATTCCAGACTTGAGCAATGTG...CCGAGAGACTGGACTCAGTAGTACAGCATTTTCTCTAGAATGGGCAAAAAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR-3UTR CCA 90 bp | GATAGGCTGAAGTCAAAGAAAATGAAAAGGTTTAATTCCCAGGGAGTGCAGGGGAGCCTCAGTGAGTTTTaGGTCACAACCCTCAAAACA | + |
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Preference number: 2 (lower is better) Translates to: DRLKSKKMKRFNSQGVQGSLSEF*VTTLKT Trigger: TGTTTTGAGGGTTGTGACCCAAAACTCACTGAGGCT...CCCCTGCACTCCCTGGGAATTAAACCTTTTCATTTTCTTTGACTTCAGCCTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR-3UTR TCA 90 bp | GCTATCAATCAAAGTCAGTATATATGGGACCTTTGTCACGGGGATTTTGACCCACTAGCCTGGGCAAGATaGTATCCTAGCTCAAAACTA | + |
|
Preference number: 2 (lower is better) Translates to: AINQSQYIWDLCHGDFDPLAWAR*YPSSKL Trigger: TAGTTTTGAGCTAGGATATCATCTTGCCCAGGCTAG...TGGGTCAAAATCCCCGTGACAAAGGTCCCATATATACTGACTTTGATTGATAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| 3UTR-3UTR CCA 90 bp | GATAGGCTGAAGTCAAAGAAAATGAAAAGGTTTAATTCCCAGGGAGTGCAGGGGTTACCCAAGCAAAAGTaGCATTTGAAGAAGGAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: DRLKSKKMKRFNSQGVQGLPKQK*HLKKEA Trigger: AGCCTCCTTCTTCAAATGCCACTTTTGCTTGGGTAA...CCCCTGCACTCCCTGGGAATTAAACCTTTTCATTTTCTTTGACTTCAGCCTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCTTTTTGCCCATTCTAGAGAAAATGCTGTACTACTGAGTCCAGTCTCTCGGATGTGCAGTACGGTCTaGCACAAAACAAAAACACAC | + |
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Preference number: 2 (lower is better) Translates to: ILFAHSRENAVLLSPVSRMCSTV*HKTKTH Trigger: GTGTGTTTTTGTTTTGTGGCAGACCGTACTGCACAT...CCGAGAGACTGGACTCAGTAGTACAGCATTTTCTCTAGAATGGGCAAAAAGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR-3UTR CAA 90 bp | CACCCTCACCCTGCCTGCTCAGGATTGCAGCAGTCCACAGGCCCCGAGCGAGGCTACAGCCATACAGCCTaGAGAGCCCAGCATTCAGGG | + |
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Preference number: 3 (lower is better) Translates to: HPHPACSGLQQSTGPERGYSHTA*RAQHSG Trigger: CCCTGAATGCTGGGCTCTCAAGGCTGTATGGCTGTA...GCCTCGCTCGGGGCCTGTGGACTGCTGCAATCCTGAGCAGGCAGGGTGAGGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR TCA 72 bp | CGGTGCCAGGTCGCTCGGGGAAGCTCAGGCTTGCTTTaGACTGGCTACTGGCCTCAAAGCCATGATCGTCCT | + |
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Preference number: 3 (lower is better) Translates to: RCQVARGSSGLL*TGYWPQSHDRP Trigger: AGGACGATCATGGCTTTGAGGCCAGTAGCCAGTTCAAAGCAAGCCTGAGCTTCCCCGAGCGACCTGGCACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR TCA 72 bp | AATCAGAAAGGTCTGCTGGGAAGACAGTGCTGGCCCTaGACTCACACTGGCTCTACGTTAAGATGCGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: NQKGLLGRQCWP*THTGSTLRCAS Trigger: GCTGGCGCATCTTAACGTAGAGCCAGTGTGAGTTCAGGGCCAGCACTGTCTTCCCAGCAGACCTTTCTGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR GCA 72 bp | CATGGCGTAGGCATTGTCTGGGAGTCCGACAGTTTCTaGCATTCAAACTGTAGTGGAAGGGAGCCTTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: HGVGIVWESDSF*HSNCSGREPSL Trigger: CAAGGAAGGCTCCCTTCCACTACAGTTTGAATGGCAGAAACTGTCGGACTCCCAGACAATGCCTACGCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231251.2 |
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| 3UTR GCA 72 bp | CGAAGGGGTCAGAGAAGCCAAGCAACTGTAACCACCTaGTTTCGGGGTAACTCATCTAGCATCATTGGAACT | + |
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Preference number: 3 (lower is better) Translates to: RRGQRSQATVTT*FRGNSSSIIGT Trigger: AGTTCCAATGATGCTAGATGAGTTACCCCGAAAGCAGGTGGTTACAGTTGCTTGGCTTCTCTGACCCCTTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR GCA 72 bp | AGGATCAAGTGGATCGGCTTGGTTTCCGGTAGGTACTaGATTACCCAAGCAAAAGTGGCATTTGAAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: RIKWIGLVSGRY*ITQAKVAFEEG Trigger: TCCTTCTTCAAATGCCACTTTTGCTTGGGTAATGCAGTACCTACCGGAAACCAAGCCGATCCACTTGATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR TCA 72 bp | TTTCTGCTGTCCAAGGATATCATAAGTACTTTAAGGTaGAACCAGCCTTGTCTTCCATGGGCGTTGCGACTG | + |
|
Preference number: 3 (lower is better) Translates to: FLLSKDIISTLR*NQPCLPWALRL Trigger: CAGTCGCAACGCCCATGGAAGACAAGGCTGGTTTCACCTTAAAGTACTTATGATATCCTTGGACAGCAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR-3UTR CAA 90 bp | GATAGGCTGAAGTCAAAGAAAATGAAAAGGTTTAATTCCCAGGGAGTGCAGGGGACTCATCTAGCATCATaGGAACTACATCAATCCCGT | + |
|
Preference number: 3 (lower is better) Translates to: DRLKSKKMKRFNSQGVQGTHLAS*ELHQSR Trigger: ACGGGATTGATGTAGTTCCAATGATGCTAGATGAGT...CCCCTGCACTCCCTGGGAATTAAACCTTTTCATTTTCTTTGACTTCAGCCTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| 3UTR CCA 72 bp | TTACCAACATTGATTCTAGAGCAAGTACTTGCTCCTTaGTTGACTAAAATCAGTGAGGTTGTCTGGGAAATT | + |
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Preference number: 3 (lower is better) Translates to: LPTLILEQVLAP*LTKISEVVWEI Trigger: AATTTCCCAGACAACCTCACTGATTTTAGTCAACCAAGGAGCAAGTACTTGCTCTAGAATCAATGTTGGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR GCA 90 bp | CTACAGACCCATAAATCTGCCACCCTCACCCTGCCTGCTCAGGATTGCAGCAGTCCAATGTCCGACAGCTaGAGGTTGGTCACATTTATA | + |
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Preference number: 4 (lower is better) Translates to: LQTHKSATLTLPAQDCSSPMSDS*RLVTFI Trigger: TATAAATGTGACCAACCTGCAGCTGTCGGACATTGG...ACTGCTGCAATCCTGAGCAGGCAGGGTGAGGGTGGCAGATTTATGGGTCTGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR CCA 90 bp | ACTATGTCTCTGATTCTTGATCCTCCAGGCCTGTTGGGGTTCACAGTGTTTGTTCATTTCTGCCAGCCATaGCGTAGGCATTGTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: TMSLILDPPGLLGFTVFVHFCQP*RRHCLG Trigger: TCCCAGACAATGCCTACGCCATGGCTGGCAGAAATG...AACAAACACTGTGAACCCCAACAGGCCTGGAGGATCAAGAATCAGAGACATAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR GCA 90 bp | GGACATCTGACTTACTCGCCTTCTCCCATCAGAGAAAGCAGATGTGTTCCTGTACGTACTTCTCTTCTCTaGGTTTCCTGTGACAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GHLTYSPSPIRESRCVPVRTSLL*VSCDSR Trigger: TCTGCTGTCACAGGAAACGCAGAGAAGAGAAGTACG...TACAGGAACACATCTGCTTTCTCTGATGGGAGAAGGCGAGTAAGTCAGATGTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR GCA 90 bp | GGACATCTGACTTACTCGCCTTCTCCCATCAGAGAAAGCAGATGTGTTCCTGTACCAATGTCCGACAGCTaGAGGTTGGTCACATTTATA | + |
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Preference number: 4 (lower is better) Translates to: GHLTYSPSPIRESRCVPVPMSDS*RLVTFI Trigger: TATAAATGTGACCAACCTGCAGCTGTCGGACATTGG...TACAGGAACACATCTGCTTTCTCTGATGGGAGAAGGCGAGTAAGTCAGATGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR CCA 90 bp | CAGCTATCAATCAAAGTCAGTATATATGGGACCTTTGTCACGGGGATTTTGACCCATTTCTGCCAGCCATaGCGTAGGCATTGTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: QLSIKVSIYGTFVTGILTHFCQP*RRHCLG Trigger: TCCCAGACAATGCCTACGCCATGGCTGGCAGAAATG...GGTCAAAATCCCCGTGACAAAGGTCCCATATATACTGACTTTGATTGATAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR CCA 90 bp | CTCTGTAGTGTACCGGTTAAATGCTTAGGAAACTGTTCTACAGCCATACAGCCTTGCCAATATAGCTCCTaGCAGTGGATGTCCGACTCT | + |
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Preference number: 4 (lower is better) Translates to: LCSVPVKCLGNCSTAIQPCQYSS*QWMSDS Trigger: AGAGTCGGACATCCACTGCCAGGAGCTATATTGGCA...AGGCTGTATGGCTGTAGAACAGTTTCCTAAGCATTTAACCGGTACACTACAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR GCA 90 bp | ACTATGTCTCTGATTCTTGATCCTCCAGGCCTGTTGGGGTTCACAGTGTTTGTTGGGCTTTCTTCACTTTaGACTGGTAAGTGCCAATGT | + |
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Preference number: 4 (lower is better) Translates to: TMSLILDPPGLLGFTVFVGLSSL*TGKCQC Trigger: ACATTGGCACTTACCAGTGCAAAGTGAAGAAAGCCC...AACAAACACTGTGAACCCCAACAGGCCTGGAGGATCAAGAATCAGAGACATAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR GCA 90 bp | GGACATCTGACTTACTCGCCTTCTCCCATCAGAGAAAGCAGATGTGTTCCTGTACAGGAATTTCTTATTTaGAACCCCAGGGGCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GHLTYSPSPIRESRCVPVQEFLI*NPRGFL Trigger: AAGAAAGCCCCTGGGGTTGCAAATAAGAAATTCCTG...TACAGGAACACATCTGCTTTCTCTGATGGGAGAAGGCGAGTAAGTCAGATGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR CCA 90 bp | GCTATCAATCAAAGTCAGTATATATGGGACCTTTGTCACGGGGATTTTGACCCATGCCAATATAGCTCCTaGCAGTGGATGTCCGACTCT | + |
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Preference number: 4 (lower is better) Translates to: AINQSQYIWDLCHGDFDPCQYSS*QWMSDS Trigger: AGAGTCGGACATCCACTGCCAGGAGCTATATTGGCA...TGGGTCAAAATCCCCGTGACAAAGGTCCCATATATACTGACTTTGATTGATAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR GCA 90 bp | ATTCTTTTTGCCCATTCTAGAGAAAATGCTGTACTACTGAGTCCAGTCTCTCGGCGTACTTCTCTTCTCTaGGTTTCCTGTGACAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ILFAHSRENAVLLSPVSRRTSLL*VSCDSR Trigger: TCTGCTGTCACAGGAAACGCAGAGAAGAGAAGTACG...CCGAGAGACTGGACTCAGTAGTACAGCATTTTCTCTAGAATGGGCAAAAAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR CAA 72 bp | TGCCAAAATTCACGATTAGGGACAAGAATAAGTCAGTaGGTGAACTGTGGTCCTTCTCAGCACCTGTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: CQNSRLGTRISQ*VNCGPSQHLCH Trigger: ATGACACAGGTGCTGAGAAGGACCACAGTTCACCAACTGACTTATTCTTGTCCCTAATCGTGAATTTTGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR GCA 90 bp | CTCTGTAGTGTACCGGTTAAATGCTTAGGAAACTGTTCTACAGCCATACAGCCTCAGGAATTTCTTATTTaGAACCCCAGGGGCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LCSVPVKCLGNCSTAIQPQEFLI*NPRGFL Trigger: AAGAAAGCCCCTGGGGTTGCAAATAAGAAATTCCTG...AGGCTGTATGGCTGTAGAACAGTTTCCTAAGCATTTAACCGGTACACTACAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| 3UTR CAA 72 bp | CCAACATTGATTCTAGAGCAAGTACTTGCTCCTTGGTaGACTAAAATCAGTGAGGTTGTCTGGGAAATTGCT | + |
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Preference number: 4 (lower is better) Translates to: PTLILEQVLAPW*TKISEVVWEIA Trigger: AGCAATTTCCCAGACAACCTCACTGATTTTAGTCAACCAAGGAGCAAGTACTTGCTCTAGAATCAATGTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR GCA 90 bp | AGAGACAAGAAGCTGTTTTCTGCTGTCCAAGGATATCATAAGTACTTTAAGGTGCCAATGTCCGACAGCTaGAGGTTGGTCACATTTATA | + |
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Preference number: 4 (lower is better) Translates to: RDKKLFSAVQGYHKYFKVPMSDS*RLVTFI Trigger: TATAAATGTGACCAACCTGCAGCTGTCGGACATTGG...CACCTTAAAGTACTTATGATATCCTTGGACAGCAGAAAACAGCTTCTTGTCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| CDS-3UTR GCA 90 bp | TCAATCAAAGTCAGTATATATGGGACCTTTGTCACGGGGATTTTGACCCATAATGGGCTTTCTTCACTTTaGACTGGTAAGTGCCAATGT | + |
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Preference number: 4 (lower is better) Translates to: SIKVSIYGTFVTGILTHNGLSSL*TGKCQC Trigger: ACATTGGCACTTACCAGTGCAAAGTGAAGAAAGCCC...ATTATGGGTCAAAATCCCCGTGACAAAGGTCCCATATATACTGACTTTGATTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR GCA 90 bp | CAACATGATAGGCTGAAGTCAAAGAAAATGAAAAGGTTTAATTCCCAGGGAGTGCAGGAATTTCTTATTTaGAACCCCAGGGGCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: QHDRLKSKKMKRFNSQGVQEFLI*NPRGFL Trigger: AAGAAAGCCCCTGGGGTTGCAAATAAGAAATTCCTG...CACTCCCTGGGAATTAAACCTTTTCATTTTCTTTGACTTCAGCCTATCATGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| CDS-3UTR CAA 90 bp | ACTGAGAGGCTGAGGCAGACAACAGGACATCACGGCTCACCTCAGCTGTGCGTCGATGCGTCGCCAGACTaGACATCGTTACTCGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: TERLRQTTGHHGSPQLCVDASPD*TSLLVK Trigger: TTTTACGAGTAACGATGTCAAGTCTGGCGACGCATC...GACGCACAGCTGAGGTGAGCCGTGATGTCCTGTTGTCTGCCTCAGCCTCTCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR CAA 90 bp | GAAAGCAGATGTGTTCCTGTAGCCACTGTTAACCCGCCTTGTAAACTGGATGTAATCGTTCCGGCTCGGTaGGAGGGTGGGACAACGTCT | + |
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Preference number: 5 (lower is better) Translates to: ESRCVPVATVNPPCKLDVIVPAR*EGGTTS Trigger: AGACGTTGTCCCACCCTCCAACCGAGCCGGAACGAT...TACATCCAGTTTACAAGGCGGGTTAACAGTGGCTACAGGAACACATCTGCTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR CAA 90 bp | CTCTGTAGTGTACCGGTTAAATGCTTAGGAAACTGTTCTACAGCCATACAGCCTATCGTTCCGGCTCGGTaGGAGGGTGGGACAACGTCT | + |
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Preference number: 5 (lower is better) Translates to: LCSVPVKCLGNCSTAIQPIVPAR*EGGTTS Trigger: AGACGTTGTCCCACCCTCCAACCGAGCCGGAACGAT...AGGCTGTATGGCTGTAGAACAGTTTCCTAAGCATTTAACCGGTACACTACAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR CAA 90 bp | CTCTGTAGTGTACCGGTTAAATGCTTAGGAAACTGTTCTACAGCCATACAGCCTGTCTTCACTGGGGACTaGGTTATACTGCGTCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: LCSVPVKCLGNCSTAIQPVFTGD*VILRLG Trigger: TCCAAGACGCAGTATAACCAAGTCCCCAGTGAAGAC...AGGCTGTATGGCTGTAGAACAGTTTCCTAAGCATTTAACCGGTACACTACAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR CAA 90 bp | TTTCCGGTAGGTACTGCATTACCCAAGCAAAAGTGGCATTTGAAGAAGGAGGCTGGACTGAGAGTAAACTaGCATGGTAGATACGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: FPVGTALPKQKWHLKKEAGLRVN*HGRYAV Trigger: AACTGCGTATCTACCATGCAAGTTTACTCTCAGTCC...AGCCTCCTTCTTCAAATGCCACTTTTGCTTGGGTAATGCAGTACCTACCGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231356.2 |
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| CDS-3UTR CAA 90 bp | CAGCTATCAATCAAAGTCAGTATATATGGGACCTTTGTCACGGGGATTTTGACCGTCTTCACTGGGGACTaGGTTATACTGCGTCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: QLSIKVSIYGTFVTGILTVFTGD*VILRLG Trigger: TCCAAGACGCAGTATAACCAAGTCCCCAGTGAAGAC...GGTCAAAATCCCCGTGACAAAGGTCCCATATATACTGACTTTGATTGATAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS-3UTR CAA 90 bp | ATTCTTTTTGCCCATTCTAGAGAAAATGCTGTACTACTGAGTCCAGTCTCTCGGGATGCGTCGCCAGACTaGACATCGTTACTCGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: ILFAHSRENAVLLSPVSRDASPD*TSLLVK Trigger: TTTTACGAGTAACGATGTCAAGTCTGGCGACGCATC...CCGAGAGACTGGACTCAGTAGTACAGCATTTTCTCTAGAATGGGCAAAAAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR CAA 90 bp | ATTCTTTTTGCCCATTCTAGAGAAAATGCTGTACTACTGAGTCCAGTCTCTCGGGGACTGAGAGTAAACTaGCATGGTAGATACGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: ILFAHSRENAVLLSPVSRGLRVN*HGRYAV Trigger: AACTGCGTATCTACCATGCAAGTTTACTCTCAGTCC...CCGAGAGACTGGACTCAGTAGTACAGCATTTTCTCTAGAATGGGCAAAAAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023572.15 |
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| CDS-3UTR CAA 90 bp | GCTATCAATCAAAGTCAGTATATATGGGACCTTTGTCACGGGGATTTTGACCCAGGACTGAGAGTAAACTaGCATGGTAGATACGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: AINQSQYIWDLCHGDFDPGLRVN*HGRYAV Trigger: AACTGCGTATCTACCATGCAAGTTTACTCTCAGTCC...TGGGTCAAAATCCCCGTGACAAAGGTCCCATATATACTGACTTTGATTGATAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114229.4 |
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| CDS GCA 72 bp | AATGTCCGACAGCTGCAGGTTGGTCACATTTATAGATaGGTCGCCAGACTTGACATCGTTACTCGTAAAATG | + |
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Preference number: 6 (lower is better) Translates to: NVRQLQVGHIYR*VARLDIVTRKM Trigger: CATTTTACGAGTAACGATGTCAAGTCTGGCGACGCATCTATAAATGTGACCAACCTGCAGCTGTCGGACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023572.15 ENSMUST00000114229.4 ENSMUST00000231356.2 ENSMUST00000232148.2 |
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| CDS CAA 72 bp | TGCAGGTTGGTCACATTTATAGATGCGTCGCCAGACTaGACATCGTTACTCGTAAAATGTACCCGTCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: CRLVTFIDASPD*TSLLVKCTRPF Trigger: GAAAGGACGGGTACATTTTACGAGTAACGATGTCAAGTCTGGCGACGCATCTATAAATGTGACCAACCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023572.15 ENSMUST00000114229.4 ENSMUST00000231356.2 ENSMUST00000232148.2 |
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