Pregenerated sensors for CX3CL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031778Ensembl transcript IDs: ENSMUST00000034230.7, ENSMUST00000135970.2, ENSMUST00000150307.2, ENSMUST00000211947.2, ENSMUST00000211956.2
Found 126 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGGAGGTCAGGGGGACAGGCAGATAGGCCTGGCCTGCTGCTTGTaGTATGGGCGGACCACGGTGCGCGCGGGAAACAGGTGTCGTCGC | + |
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Preference number: 1 (lower is better) Translates to: QGGQGDRQIGLACCL*YGRTTVRAGNRCRR Trigger: GCGACGACACCTGTTTCCCGCGCGCACCGTGGTCCGCCCATATCACAAGCAGCAGGCCAGGCCTATCTGCCTGTCCCCCTGACCTCCTTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 90 bp | GACATAGGGCAGATAGCACCGCAGCTGGCCGGGGAGGAGAAGGGCTaGCGACTGCAGCAAAGCCAGGAGACACAAGGAGGTCAGGGGGAC | + |
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Preference number: 1 (lower is better) Translates to: DIGQIAPQLAGEEKG*RLQQSQETQGGQGD Trigger: GTCCCCCTGACCTCCTTGTGTCTCCTGGCTTTGCTGCAGTCGCCAGCCCTTCTCCTCCCCGGCCAGCTGCGGTGCTATCTGCCCTATGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 90 bp | ACTCGGGCTGCTGCGGCTCAGGCCTACAACTGGTTCTGTGGAGCATaGTCAGAGCCGCCCACAGGCTTCCCAGGAGGAGGGTCGACAAAG | + |
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Preference number: 1 (lower is better) Translates to: TRAAAAQAYNWFCGA*SEPPTGFPGGGSTK Trigger: CTTTGTCGACCCTCCTCCTGGGAAGCCTGTGGGCGGCTCTGATCATGCTCCACAGAACCAGTTGTAGGCCTGAGCCGCAGCAGCCCGAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 90 bp | ATGGGAGTTCTGGCCCTGCCTGCAATGGGGGCAAAGGTGAGTCCTTaGCGTGAACACTGCTCTCAGAGACAGGAAAGGACCCTGGCAGCC | + |
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Preference number: 1 (lower is better) Translates to: MGVLALPAMGAKVSP*REHCSQRQERTLAA Trigger: GGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGGCAGGGCCAGAACTCCCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 90 bp | AGTTCTGGCCCTGCCTGCAATGGGGGCAAAGGTGAGTCCTTGGCGTaGACACTGCTCTCAGAGACAGGAAAGGACCCTGGCAGCCTCTGT | + |
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Preference number: 1 (lower is better) Translates to: SSGPACNGGKGESLA*TLLSETGKDPGSLC Trigger: ACAGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGGCAGGGCCAGAACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 90 bp | ACGGCCCACATTCTGCTCTGGGAGGGAGGAACCAACAAAGTCCGATaGCGGGTGTCCCAACCCTTAAAGGTTCCCCACCGAAGGAGCCAG | + |
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Preference number: 1 (lower is better) Translates to: TAHILLWEGGTNKVR*RVSQPLKVPHRRSQ Trigger: CTGGCTCCTTCGGTGGGGAACCTTTAAGGGTTGGGACACCCGTCATCGGACTTTGTTGGTTCCTCCCTCCCAGAGCAGAATGTGGGCCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 90 bp | TCAGAGCCGCCCACAGGCTTCCCAGGAGGAGGGTCGACAAAGGGTTaGCTTCCTCACTCTCAGGAGCCAACTGAGCTTCCACCAATCAAG | + |
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Preference number: 1 (lower is better) Translates to: SEPPTGFPGGGSTKG*LPHSQEPTELPPIK Trigger: CTTGATTGGTGGAAGCTCAGTTGGCTCCTGAGAGTGAGGAAGCCAACCCTTTGTCGACCCTCCTCCTGGGAAGCCTGTGGGCGGCTCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 90 bp | GCTGCCGGTGGCTCTTGGGAAGTCCCCATGGTCCCCCTGGCCTCCTaGGAAATAGTAGTCAGTTCCAAAGCAAGGTCTTCCAATGTGGCG | + |
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Preference number: 1 (lower is better) Translates to: AAGGSWEVPMVPLAS*EIVVSSKARSSNVA Trigger: CGCCACATTGGAAGACCTTGCTTTGGAACTGACTACTATTTCCCAGGAGGCCAGGGGGACCATGGGGACTTCCCAAGAGCCACCGGCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
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| 3UTR TCA 90 bp | CTTCCTCACTCTCAGGAGCCAACTGAGCTTCCACCAATCAAGGAGTaGGTCACTGGCTTCTGGGTGAAGCTCGCCCCTGGGAGGCTCCTA | + |
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Preference number: 1 (lower is better) Translates to: LPHSQEPTELPPIKE*VTGFWVKLAPGRLL Trigger: TAGGAGCCTCCCAGGGGCGAGCTTCACCCAGAAGCCAGTGACTCACTCCTTGATTGGTGGAAGCTCAGTTGGCTCCTGAGAGTGAGGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 90 bp | CAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGAGAATaGTATGGGAGTTCTGGCCCTGCCTGCAATGGGGGCAAAGGTGAG | + |
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Preference number: 1 (lower is better) Translates to: QGRVPSRKCHRALGE*YGSSGPACNGGKGE Trigger: CTCACCTTTGCCCCCATTGCAGGCAGGGCCAGAACTCCCATAGCATTCTCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 90 bp | AGCAAGGTCTTCCAATGTGGCGGATTCAGGCTTTGTCAGGGCAGATaGGGACAGTCCCCTAGTGGCCAAGGTGATCCCAGGTGTCACATT | + |
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Preference number: 1 (lower is better) Translates to: SKVFQCGGFRLCQGR*GQSPSGQGDPRCHI Trigger: AATGTGACACCTGGGATCACCTTGGCCACTAGGGGACTGTCCCCATCTGCCCTGACAAAGCCTGAATCCGCCACATTGGAAGACCTTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000150307.2 ENSMUST00000211947.2 |
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| 3UTR TCA 90 bp | AGGAGGGTCGACAAAGGGTTGGCTTCCTCACTCTCAGGAGCCAACTaGGCTTCCACCAATCAAGGAGTGAGTCACTGGCTTCTGGGTGAA | + |
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Preference number: 1 (lower is better) Translates to: RRVDKGLASSLSGAN*ASTNQGVSHWLLGE Trigger: TTCACCCAGAAGCCAGTGACTCACTCCTTGATTGGTGGAAGCTCAGTTGGCTCCTGAGAGTGAGGAAGCCAACCCTTTGTCGACCCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 90 bp | GGAAAGGACCCTGGCAGCCTCTGTCTGACTATGCAAGTACACACATaGACAAGTCCCTACACTGAAATTGGGTTTGTGGCCACTCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: GKDPGSLCLTMQVHT*TSPYTEIGFVATPG Trigger: CCCTGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTGCATAGTCAGACAGAGGCTGCCAGGGTCCTTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 90 bp | CCTAATCTTTCCTATGTGGCTTGTCCTTTAGCCAGGGCAGACCTGTaGCTGTCACCTTGGTGCATGGGGGAGGGGTTTCTAGTGAGAACA | + |
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Preference number: 1 (lower is better) Translates to: PNLSYVACPLARADL*LSPWCMGEGFLVRT Trigger: TGTTCTCACTAGAAACCCCTCCCCCATGCACCAAGGTGACAGTCACAGGTCTGCCCTGGCTAAAGGACAAGCCACATAGGAAAGATTAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 90 bp | GAACACTGCTCTCAGAGACAGGAAAGGACCCTGGCAGCCTCTGTCTaGCTATGCAAGTACACACATGCACAAGTCCCTACACTGAAATTG | + |
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Preference number: 1 (lower is better) Translates to: EHCSQRQERTLAASV*LCKYTHAQVPTLKL Trigger: CAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTGCATAGTCAGACAGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 90 bp | CTCAGAGAAAGTGATGATGTCAGGGCCATAGGTTATTGCCAGCTCTaGACCACGTTTCTTTCCTTTTACAGGTGGGGCACTTTGTGGTGC | + |
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Preference number: 1 (lower is better) Translates to: LRESDDVRAIGYCQL*TTFLSFYRWGTLWC Trigger: GCACCACAAAGTGCCCCACCTGTAAAAGGAAAGAAACGTGGTCCAGAGCTGGCAATAACCTATGGCCCTGACATCATCACTTTCTCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 90 bp | GACAAGGATCTCAGAGAAAGTGATGATGTCAGGGCCATAGGTTATTaGCAGCTCTGGACCACGTTTCTTTCCTTTTACAGGTGGGGCACT | + |
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Preference number: 1 (lower is better) Translates to: DKDLRESDDVRAIGY*QLWTTFLSFYRWGT Trigger: AGTGCCCCACCTGTAAAAGGAAAGAAACGTGGTCCAGAGCTGGCAATAACCTATGGCCCTGACATCATCACTTTCTCTGAGATCCTTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTGCGCTCTGTACAGGGGATAGAGGGAGACATAGGGCAGATAGCACCGCAAATAGTGGTCTAGGGTaGCCTCCGGGGCCACCCCTC | + |
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Preference number: 2 (lower is better) Translates to: GGALCTGDRGRHRADSTANSGLG*PPGPPL Trigger: GAGGGGTGGCCCCGGAGGCCACCCTAGACCACTATT...TGCGGTGCTATCTGCCCTATGTCTCCCTCTATCCCCTGTACAGAGCGCACCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CAA 90 bp | CTCCGCTGGGGTGCTGCTCAGCTGCTCCTTGCTTCAGCAGTCACTTaGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: LRWGAAQLLLASAVT*RPGQSPFQKMSQGS Trigger: AGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGACTGCTGAAGCAAGGAGCAGCTGAGCAGCACCCCAGCGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CAA 90 bp | TTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTaGGAGAATGCTATGGGAGTTCTGGCCCTGCCTGCAATGGGGGCA | + |
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Preference number: 2 (lower is better) Translates to: FAPRAESLPENVTGL*ENAMGVLALPAMGA Trigger: TGCCCCCATTGCAGGCAGGGCCAGAACTCCCATAGCATTCTCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR TCA 90 bp | AAGGTCTTCCAATGTGGCGGATTCAGGCTTTGTCAGGGCAGATGGGGACAGTCCAGGGCAGCAGCCTGGTaGTCCAGATGCTTCATGGCG | + |
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Preference number: 2 (lower is better) Translates to: KVFQCGGFRLCQGRWGQSRAAAW*SRCFMA Trigger: CGCCATGAAGCATCTGGATCACCAGGCTGCTGCCCT...GGACTGTCCCCATCTGCCCTGACAAAGCCTGAATCCGCCACATTGGAAGACCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGCAATGGGGGCAAAGGTGAGTCCTTGGCGTGAACACTGCTCTCAGAGACAGAGAAGGGCTGGCGACTaGAGCAAAGCCAGGAGACAC | + |
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Preference number: 2 (lower is better) Translates to: PAMGAKVSPWREHCSQRQRRAGD*SKARRH Trigger: GTGTCTCCTGGCTTTGCTGCAGTCGCCAGCCCTTCT...CTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | GATCTTAAGGTCAGCGAGGAGATAGCCTGTGGGCCTGAAACAAGGCCCACACTTGGGGAGAGGGAGGGCTaGAATGTCCTAGGGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: DLKVSEEIACGPETRPTLGEREG*NVLGPL Trigger: CAGAGGCCCTAGGACATTCCAGCCCTCCCTCTCCCC...AAGTGTGGGCCTTGTTTCAGGCCCACAGGCTATCTCCTCGCTGACCTTAAGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211956.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTATGCTATGGGAGTTCTaGCCCTGCCTGCAATGGGGG | + |
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Preference number: 2 (lower is better) Translates to: QSLCAQGRVPSRKCHRALMLWEF*PCLQWG Trigger: CCCCCATTGCAGGCAGGGCCAGAACTCCCATAGCAT...AAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTCCCATTTCCCCAGCGTaGATGAAGGTGGGTATGAGG | + |
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Preference number: 2 (lower is better) Translates to: QSLCAQGRVPSRKCHRALPISPA*MKVGMR Trigger: CCTCATACCCACCTTCATCCACGCTGGGGAAATGGG...AAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | TCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGAGGTTGCACCCAGGGGTaGAGACAAGGATCTCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: SLCAQGRVPSRKCHRALGGCTQG*RQGSQR Trigger: TCTCTGAGATCCTTGTCTCCACCCCTGGGTGCAACC...TCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR GCA 90 bp | TCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGACCTTGGCGTGAACACTaGTCTCAGAGACAGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: SLCAQGRVPSRKCHRALGPWREH*SQRQER Trigger: CCTTTCCTGTCTCTGAGAGCAGTGTTCACGCCAAGG...TCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | ATGGTGATGGTGGTGCGCTCTGTACAGGGGATAGAGGGAGACATAGGGCAGATAGTCCGAATCACACTCTaGACACAGGCAGGCAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: MVMVVRSVQGIEGDIGQIVRITL*TQAGRQ Trigger: TTGCCTGCCTGCCTGTGTCCAGAGTGTGATTCGGAC...TATCTGCCCTATGTCTCCCTCTATCCCCTGTACAGAGCGCACCACCATCACCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | TCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGAGCAAAGGTGAGTCCTTaGCGTGAACACTGCTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: SLCAQGRVPSRKCHRALGAKVSP*REHCSQ Trigger: CTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGC...TCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR TCA 90 bp | GTGAACACTGCTCTCAGAGACAGGAAAGGACCCTGGCAGCCTCTGTCTGACTATCACAAGTCCCTACACTaGAATTGGGTTTGTGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: VNTALRDRKGPWQPLSDYHKSLH*NWVCGH Trigger: GTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTG...ATAGTCAGACAGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR GCA 90 bp | TCCTTCGGGTCAGCACAGAAGCGTCTGTGCTGTGTCGTCTCCAGGACAATGGCAACACACATATGGATGTaGAAACATGCTCCATCTCGC | + |
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Preference number: 2 (lower is better) Translates to: SFGSAQKRLCCVVSRTMATHIWM*KHAPSR Trigger: GCGAGATGGAGCATGTTTGCACATCCATATGTGTGT...TGCCATTGTCCTGGAGACGACACAGCACAGACGCTTCTGTGCTGACCCGAAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
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| 3UTR-3UTR CCA 90 bp | AGATTGTTACGGCCCACATTCTGCTCTGGGAGGGAGGAACCAACAAAGTCCGATGGAAGCCATCTGAGTTaGCCTCTGTTCCTGCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: RLLRPTFCSGREEPTKSDGSHLS*PLFLQV Trigger: GACTTGCAGGAACAGAGGCCAACTCAGATGGCTTCC...ATCGGACTTTGTTGGTTCCTCCCTCCCAGAGCAGAATGTGGGCCGTAACAATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGTTATTGCCAGCTCTaGACCACGTTTCTTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: QSLCAQGRVPSRKCHRALGYCQL*TTFLSF Trigger: AAAGGAAAGAAACGTGGTCCAGAGCTGGCAATAACC...AAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CCA 90 bp | AACTTTCAAAGTCCTCCTCAGATTGTTACGGCCCACATTCTGCTCTGGGAGGGAATGTCACAGGGCTCTTaGAGAATGCTATGGGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: NFQSPPQIVTAHILLWEGMSQGS*RMLWEF Trigger: GAACTCCCATAGCATTCTCCAAGAGCCCTGTGACAT...TCCCTCCCAGAGCAGAATGTGGGCCGTAACAATCTGAGGAGGACTTTGAAAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR GCA 90 bp | CCACGTTTCTTTCCTTTTACAGGTGGGGCACTTTGTGGTGCTGGTAGCCGAGTGACAGCTTTAACCTCATaGAAGAAAAGACACAACAGC | + |
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Preference number: 2 (lower is better) Translates to: PRFFPFTGGALCGAGSRVTALTS*KKRHNS Trigger: GCTGTTGTGTCTTTTCTTGCATGAGGTTAAAGCTGT...CACTCGGCTACCAGCACCACAAAGTGCCCCACCTGTAAAAGGAAAGAAACGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 72 bp | CACCGCAGCTGGCCGGGGAGGAGAAGGGCTGGCGACTaGAGCAAAGCCAGGAGACACAAGGAGGTCAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: HRSWPGRRRAGD*SKARRHKEVRG Trigger: CCCCCTGACCTCCTTGTGTCTCCTGGCTTTGCTGCAGTCGCCAGCCCTTCTCCTCCCCGGCCAGCTGCGGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 72 bp | GCCTGCCGGCTCAGCTCCGCTGGGGTGCTGCTCAGCTaGTCCTTGCTTCAGCAGTCACTTTGCGCCCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: ACRLSSAGVLLS*SLLQQSLCAQG Trigger: GCCCTGGGCGCAAAGTGACTGCTGAAGCAAGGAGCAGCTGAGCAGCACCCCAGCGGAGCTGAGCCGGCAGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 72 bp | GGGGCGTGGCCTGCCGGCTCAGCTCCGCTGGGGTGCTaGTCAGCTGCTCCTTGCTTCAGCAGTCACTTTGCG | + |
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Preference number: 3 (lower is better) Translates to: GAWPAGSAPLGC*SAAPCFSSHFA Trigger: CGCAAAGTGACTGCTGAAGCAAGGAGCAGCTGAGCAGCACCCCAGCGGAGCTGAGCCGGCAGGCCACGCCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 72 bp | GCTGCGGCTCAGGCCTACAACTGGTTCTGTGGAGCATaGTCAGAGCCGCCCACAGGCTTCCCAGGAGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: AAAQAYNWFCGA*SEPPTGFPGGG Trigger: CCCTCCTCCTGGGAAGCCTGTGGGCGGCTCTGATCATGCTCCACAGAACCAGTTGTAGGCCTGAGCCGCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 72 bp | CAGATAGCACCGCAGCTGGCCGGGGAGGAGAAGGGCTaGCGACTGCAGCAAAGCCAGGAGACACAAGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: QIAPQLAGEEKG*RLQQSQETQGG Trigger: ACCTCCTTGTGTCTCCTGGCTTTGCTGCAGTCGCCAGCCCTTCTCCTCCCCGGCCAGCTGCGGTGCTATCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 72 bp | GAGAGAGATGATCCGGTCACTGCTGCCGGTGGCTCTTaGGAAGTCCCCATGGTCCCCCTGGCCTCCTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: ERDDPVTAAGGS*EVPMVPLASWE Trigger: TTCCCAGGAGGCCAGGGGGACCATGGGGACTTCCCAAGAGCCACCGGCAGCAGTGACCGGATCATCTCTCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
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| 3UTR TCA 72 bp | CCTGCCTGCAATGGGGGCAAAGGTGAGTCCTTGGCGTaGACACTGCTCTCAGAGACAGGAAAGGACCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: PACNGGKGESLA*TLLSETGKDPG Trigger: GCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGGCAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 72 bp | CTGGCCCTGCCTGCAATGGGGGCAAAGGTGAGTCCTTaGCGTGAACACTGCTCTCAGAGACAGGAAAGGACC | + |
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Preference number: 3 (lower is better) Translates to: LALPAMGAKVSP*REHCSQRQERT Trigger: GGTCCTTTCCTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGGCAGGGCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR TCA 72 bp | TCTCAGGAGCCAACTGAGCTTCCACCAATCAAGGAGTaGGTCACTGGCTTCTGGGTGAAGCTCGCCCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: SQEPTELPPIKE*VTGFWVKLAPG Trigger: CCCAGGGGCGAGCTTCACCCAGAAGCCAGTGACTCACTCCTTGATTGGTGGAAGCTCAGTTGGCTCCTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR GCA 72 bp | GCAATGGGGGCAAAGGTGAGTCCTTGGCGTGAACACTaGTCTCAGAGACAGGAAAGGACCCTGGCAGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: AMGAKVSPWREH*SQRQERTLAAS Trigger: AGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CCA 72 bp | TTCCAATGTGGCGGATTCAGGCTTTGTCAGGGCAGATaGGGACAGTCCCCTAGTGGCCAAGGTGATCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: FQCGGFRLCQGR*GQSPSGQGDPR Trigger: CCTGGGATCACCTTGGCCACTAGGGGACTGTCCCCATCTGCCCTGACAAAGCCTGAATCCGCCACATTGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000150307.2 ENSMUST00000211947.2 |
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| 3UTR-3UTR CAA 90 bp | CACTCCAGGGGTTTACCCTGGATCCTCTGCCTCCGAGGGGCTTGTCCTAATCTTGGGAAGCCATCTGAGTaGGCCTCTGTTCCTGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: HSRGLPWILCLRGACPNLGKPSE*ASVPAS Trigger: ACTTGCAGGAACAGAGGCCAACTCAGATGGCTTCCC...AAGATTAGGACAAGCCCCTCGGAGGCAGAGGATCCAGGGTAAACCCCTGGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR-3UTR CAA 90 bp | CCCTGGCAGCCTCTGTCTGACTATGCAAGTACACACATGCACAAGTCCCTACACCCTGTGACTGTCACCTaGGTGCATGGGGGAGGGGTT | + |
|
Preference number: 3 (lower is better) Translates to: PWQPLSDYASTHMHKSLHPVTVT*VHGGGV Trigger: AACCCCTCCCCCATGCACCAAGGTGACAGTCACAGG...GTGTAGGGACTTGTGCATGTGTGTACTTGCATAGTCAGACAGAGGCTGCCAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR TCA 72 bp | GTGGAGATGTCAGCCGCCTCAAAACTTCCAATGCTCTaGGGCTTAGCCGTAAGCCCTGCATCCTGTGCCTCG | + |
|
Preference number: 3 (lower is better) Translates to: VEMSAASKLPML*GLAVSPASCAS Trigger: CGAGGCACAGGATGCAGGGCTTACGGCTAAGCCTCAGAGCATTGGAAGTTTTGAGGCGGCTGACATCTCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
||
| 3UTR GCA 72 bp | GTCCCTTCCAGAAAATGTCACAGGGCTCTTGGAGAATaGTATGGGAGTTCTGGCCCTGCCTGCAATGGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: VPSRKCHRALGE*YGSSGPACNGG Trigger: GCCCCCATTGCAGGCAGGGCCAGAACTCCCATAGCATTCTCCAAGAGCCCTGTGACATTTTCTGGAAGGGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR GCA 72 bp | GTGCTGCTCAGCTGCTCCTTGCTTCAGCAGTCACTTTaGGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: VLLSCSLLQQSL*AQGRVPSRKCH Trigger: GTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGACTGCTGAAGCAAGGAGCAGCTGAGCAGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CCA 72 bp | GGCTCTTGGGAAGTCCCCATGGTCCCCCTGGCCTCCTaGGAAATAGTAGTCAGTTCCAAAGCAAGGTCTTCC | + |
|
Preference number: 3 (lower is better) Translates to: GSWEVPMVPLAS*EIVVSSKARSS Trigger: GGAAGACCTTGCTTTGGAACTGACTACTATTTCCCAGGAGGCCAGGGGGACCATGGGGACTTCCCAAGAGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
||
| 3UTR TCA 72 bp | TCCTATGTGGCTTGTCCTTTAGCCAGGGCAGACCTGTaGCTGTCACCTTGGTGCATGGGGGAGGGGTTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: SYVACPLARADL*LSPWCMGEGFL Trigger: TAGAAACCCCTCCCCCATGCACCAAGGTGACAGTCACAGGTCTGCCCTGGCTAAAGGACAAGCCACATAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CCA 72 bp | GGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTaGAGAATGCTATGGGAGTTCTGGCCCTGCCTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GQSPFQKMSQGS*RMLWEFWPCLQ Trigger: TTGCAGGCAGGGCCAGAACTCCCATAGCATTCTCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR-3UTR CAA 90 bp | CCACGTTTCTTTCCTTTTACAGGTGGGGCACTTTGTGGTGCTGGTAGCCGAGTGAATTGTTCACTGGAGTaGGGGTGTCAAGGGCCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: PRFFPFTGGALCGAGSRVNCSLE*GCQGPL Trigger: GAGGGGCCCTTGACACCCCAACTCCAGTGAACAATT...CACTCGGCTACCAGCACCACAAAGTGCCCCACCTGTAAAAGGAAAGAAACGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR TCA 72 bp | GCTTGCCGCAGGACTCCTGGTTTAGCTGATAGCGGATaGGCAAAGCCACTGGGATTCGTGAGGTCATCTTGT | + |
|
Preference number: 3 (lower is better) Translates to: ACRRTPGLADSG*AKPLGFVRSSC Trigger: ACAAGATGACCTCACGAATCCCAGTGGCTTTGCTCATCCGCTATCAGCTAAACCAGGAGTCCTGCGGCAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135970.2 ENSMUST00000150307.2 |
||
| 3UTR GCA 72 bp | TGCCGAGGTGCTGACACACATATGGATGTGCAAACATaGTCCATCTCGCCAAGAATGAAGGGCAGACGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: CRGADTHMDVQT*SISPRMKGRRS Trigger: GCTCCGTCTGCCCTTCATTCTTGGCGAGATGGAGCATGTTTGCACATCCATATGTGTGTCAGCACCTCGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
||
| 3UTR CCA 72 bp | GGCGTGAACACTGCTCTCAGAGACAGGAAAGGACCCTaGCAGCCTCTGTCTGACTATGCAAGTACACACATG | + |
|
Preference number: 3 (lower is better) Translates to: GVNTALRDRKGP*QPLSDYASTHM Trigger: CATGTGTGTACTTGCATAGTCAGACAGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCACGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CCA 72 bp | TTCCAGAAAATGTCACAGGGCTCTTGGAGAATGCTATaGGAGTTCTGGCCCTGCCTGCAATGGGGGCAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: FQKMSQGSWRML*EFWPCLQWGQR Trigger: CCTTTGCCCCCATTGCAGGCAGGGCCAGAACTCCCATAGCATTCTCCAAGAGCCCTGTGACATTTTCTGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR TCA 72 bp | GACAAAGGGTTGGCTTCCTCACTCTCAGGAGCCAACTaGGCTTCCACCAATCAAGGAGTGAGTCACTGGCTT | + |
|
Preference number: 3 (lower is better) Translates to: DKGLASSLSGAN*ASTNQGVSHWL Trigger: AAGCCAGTGACTCACTCCTTGATTGGTGGAAGCTCAGTTGGCTCCTGAGAGTGAGGAAGCCAACCCTTTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR TCA 72 bp | TCTCAGAGACAGGAAAGGACCCTGGCAGCCTCTGTCTaGCTATGCAAGTACACACATGCACAAGTCCCTACA | + |
|
Preference number: 3 (lower is better) Translates to: SQRQERTLAASV*LCKYTHAQVPT Trigger: TGTAGGGACTTGTGCATGTGTGTACTTGCATAGTCAGACAGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR TCA 72 bp | AAGCCACTGGGATTCGTGAGGTCATCTTGTCGCACATaGTTTCGCATTTCGTCATGCCGAGGTGCTGACACA | + |
|
Preference number: 3 (lower is better) Translates to: KPLGFVRSSCRT*FRISSCRGADT Trigger: TGTGTCAGCACCTCGGCATGACGAAATGCGAAATCATGTGCGACAAGATGACCTCACGAATCCCAGTGGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
||
| 3UTR TCA 72 bp | AACTTGCCACCATTTTTAGTGAGGGCAGCAGCCTGGTaGTCCAGATGCTTCATGGCGTCTTGGACCCATTTC | + |
|
Preference number: 3 (lower is better) Translates to: NLPPFLVRAAAW*SRCFMASWTHF Trigger: GAAATGGGTCCAAGACGCCATGAAGCATCTGGATCACCAGGCTGCTGCCCTCACTAAAAATGGTGGCAAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
||
| 3UTR GCA 72 bp | CCTGGCAGCCTCTGTCTGACTATGCAAGTACACACATaGACAAGTCCCTACACTGAAATTGGGTTTGTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: PGSLCLTMQVHT*TSPYTEIGFVA Trigger: GGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTGCATAGTCAGACAGAGGCTGCCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CCA 72 bp | AGTGGAATGGCAGTGACTATTAATGTTGATAAGGGGTaGGGTTGCACCCAGGGGTGGAGACAAGGATCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: SGMAVTINVDKG*GCTQGWRQGSQ Trigger: CTGAGATCCTTGTCTCCACCCCTGGGTGCAACCCCACCCCTTATCAACATTAATAGTCACTGCCATTCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR TCA 72 bp | GACTATGCAAGTACACACATGCACAAGTCCCTACACTaGAATTGGGTTTGTGGCCACTCCAGGGGTTTACCC | + |
|
Preference number: 3 (lower is better) Translates to: DYASTHMHKSLH*NWVCGHSRGLP Trigger: GGGTAAACCCCTGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTGCATAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR GCA 72 bp | CATACAGGGTACGATCTGCACTCTCAAGCCACTCCTTaGCAGCCCTCAGAATCACAGGGTACAAAAATGTCA | + |
|
Preference number: 3 (lower is better) Translates to: HTGYDLHSQATP*QPSESQGTKMS Trigger: TGACATTTTTGTACCCTGTGATTCTGAGGGCTGGCAAGGAGTGGCTTGAGAGTGCAGATCGTACCCTGTATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CCA 72 bp | AGTGATGATGTCAGGGCCATAGGTTATTGCCAGCTCTaGACCACGTTTCTTTCCTTTTACAGGTGGGGCACT | + |
|
Preference number: 3 (lower is better) Translates to: SDDVRAIGYCQL*TTFLSFYRWGT Trigger: AGTGCCCCACCTGTAAAAGGAAAGAAACGTGGTCCAGAGCTGGCAATAACCTATGGCCCTGACATCATCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR GCA 72 bp | TCCCGGAGAGCTCCAGAAAACACAGCTTTAACCTCATaGAAGAAAAGACACAACAGCGGTGTTGATGGTGAT | + |
|
Preference number: 3 (lower is better) Translates to: SRRAPENTALTS*KKRHNSGVDGD Trigger: ATCACCATCAACACCGCTGTTGTGTCTTTTCTTGCATGAGGTTAAAGCTGTGTTTTCTGGAGCTCTCCGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | ACTGCAGCAAAGCCAGGAGACACAAGGAGGTCAGGGGGACAGGCAGATAGGCCTCTGTCCCTGGACCCATaGGGGTTGGCCTTCGGACCC | + |
|
Preference number: 4 (lower is better) Translates to: TAAKPGDTRRSGGQADRPLSLDP*GLAFGP Trigger: GGGTCCGAAGGCCAACCCCCATGGGTCCAGGGACAG...AGGCCTATCTGCCTGTCCCCCTGACCTCCTTGTGTCTCCTGGCTTTGCTGCAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | TTGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGATCCTCTGCCTCCGAGGGGCTCTATCTTAGGAGCCTaGCTGCCCGAGGCCACCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LGLWPLQGFTLDPLPPRGSILGA*LPEATS Trigger: GCTGGTGGCCTCGGGCAGCCAGGCTCCTAAGATAGA...GCCCCTCGGAGGCAGAGGATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | GGTGGTGCGCTCTGTACAGGGGATAGAGGGAGACATAGGGCAGATAGCACCGCACTGAGGTCCTGTCCCTaGACCCATGGGGGTTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GGALCTGDRGRHRADSTALRSCP*THGGWP Trigger: AGGCCAACCCCCATGGGTCCAGGGACAGGACCTCAG...TGCGGTGCTATCTGCCCTATGTCTCCCTCTATCCCCTGTACAGAGCGCACCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | GGTGGTGCGCTCTGTACAGGGGATAGAGGGAGACATAGGGCAGATAGCACCGCACCACCAGCTCTGGGCTaGGGGTCTCTTCAGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GGALCTGDRGRHRADSTAPPALG*GSLQRR Trigger: TCTCCTCTGAAGAGACCCCCAGCCCAGAGCTGGTGG...TGCGGTGCTATCTGCCCTATGTCTCCCTCTATCCCCTGTACAGAGCGCACCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR TCA 90 bp | TCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGAGGAGATGGGAGCCACTaGGGGGTGGACTGTGTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLCAQGRVPSRKCHRALGGDGSH*GVDCVA Trigger: GGCAACACAGTCCACCCCTCAGTGGCTCCCATCTCC...TCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | TGGAGTTGGGGTGTCAAGGGCCCCTCTAACCAGCCAGCAGCAGAGGATTCTTTCGGTCACTGCTGCCGGTaGCTCTTGGGAAGTCCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: WSWGVKGPSNQPAAEDSFGHCCR*LLGSPH Trigger: ATGGGGACTTCCCAAGAGCCACCGGCAGCAGTGACC...GAAAGAATCCTCTGCTGCTGGCTGGTTAGAGGGGCCCTTGACACCCCAACTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | TGCCAGCTCTGGACCACGTTTCTTTCCTTTTACAGGTGGGGCACTTTGTGGTGCCTGCCTGCCTCCTTGTaGCTGCCTGGGTGTCGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: CQLWTTFLSFYRWGTLWCLPASL*LPGCRG Trigger: TCCCCGACACCCAGGCAGCCACAAGGAGGCAGGCAG...GCACCACAAAGTGCCCCACCTGTAAAAGGAAAGAAACGTGGTCCAGAGCTGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | TTTGTCAGGGCAGATGGGGACAGTCCCCTAGTGGCCAAGGTGATCCCAGGTGTCAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: FVRADGDSPLVAKVIPGVSRVHK*KNAARR Trigger: GCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCT...GACACCTGGGATCACCTTGGCCACTAGGGGACTGTCCCCATCTGCCCTGACAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150307.2 ENSMUST00000211947.2 |
||
| CDS-3UTR CCA 90 bp | ACACTGAAATTGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGATCCTCTGCCTCGAGGCCACCAGCTCTaGGCTGGGGGTCTCTTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TLKLGLWPLQGFTLDPLPRGHQL*AGGLFR Trigger: TCTGAAGAGACCCCCAGCCCAGAGCTGGTGGCCTCG...AGGCAGAGGATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAATTTCAGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CAA 72 bp | GGTGAAGCTCGCCCCTGGGAGGCTCCTAAGGTGAAGTaGGAGCTATTCAGAGCAGGGTGGGTAGAAATGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GEARPWEAPKVK*ELFRAGWVEMP Trigger: GGGCATTTCTACCCACCCTGCTCTGAATAGCTCCAACTTCACCTTAGGAGCCTCCCAGGGGCGAGCTTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | TTGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGATCCTCTGCCTCCGAGGGGCTCTGGTAAGCAAACATaGCCACCCCTAGGCAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LGLWPLQGFTLDPLPPRGSGKQT*PPLGRK Trigger: TTTTCTGCCTAGGGGTGGCCATGTTTGCTTACCAGA...GCCCCTCGGAGGCAGAGGATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CAA 72 bp | GGTGCTGCTCAGCTGCTCCTTGCTTCAGCAGTCACTTaGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GAAQLLLASAVT*RPGQSPFQKMS Trigger: TGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGACTGCTGAAGCAAGGAGCAGCTGAGCAGCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR TCA 90 bp | GTACACACATGCACAAGTCCCTACACTGAAATTGGGTTTGTGGCCACTCCAGGGGAGACTTCTCTGGACTaGGGTCCTGTCCCTGGACCC | + |
|
Preference number: 4 (lower is better) Translates to: VHTCTSPYTEIGFVATPGETSLD*GPVPGP Trigger: GGGTCCAGGGACAGGACCTCAGTCCAGAGAAGTCTC...CCCTGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | TCACTTTGCGCCCAGGGCAGAGTCCCTTCCAGAAAATGTCACAGGGCTCTTGGAAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: SLCAQGRVPSRKCHRALGSRVHK*KNAARR Trigger: GCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCT...TCCAAGAGCCCTGTGACATTTTCTGGAAGGGACTCTGCCCTGGGCGCAAAGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | CAAGTACACACATGCACAAGTCCCTACACTGAAATTGGGTTTGTGGCCACTCCACTTGGGAAGTCCCCATaGTCCCCCTGGCCTCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: QVHTCTSPYTEIGFVATPLGKSP*SPWPPG Trigger: CCCAGGAGGCCAGGGGGACCATGGGGACTTCCCAAG...TGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | CACTCTCAAGCCACTCCTTGCCAGCCCTCAGAATCACAGGGTACAAAAATGTCACTCCTTGTGGCTGCCTaGGTGTCGGGGACAGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: HSQATPCQPSESQGTKMSLLVAA*VSGTGV Trigger: CACTCCTGTCCCCGACACCCAGGCAGCCACAAGGAG...TGACATTTTTGTACCCTGTGATTCTGAGGGCTGGCAAGGAGTGGCTTGAGAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CAA 72 bp | GGGTTTCTAGTGAGAACACAGGGGAAGCCATCTGAGTaGGCCTCTGTTCCTGCAAGTCCCCAACTCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: GFLVRTQGKPSE*ASVPASPQLSL Trigger: GAGGCTGAGTTGGGGACTTGCAGGAACAGAGGCCAACTCAGATGGCTTCCCCTGTGTTCTCACTAGAAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR TCA 90 bp | AAGCAAGGTCTTCCAATGTGGCGGATTCAGGCTTTGTCAGGGCAGATGGGGACATCCCTGGGAAGTGTGTaGGTGTCTGCTGAGCAGATC | + |
|
Preference number: 4 (lower is better) Translates to: KQGLPMWRIQALSGQMGTSLGSV*VSAEQI Trigger: GATCTGCTCAGCAGACACTCACACACTTCCCAGGGA...TGTCCCCATCTGCCCTGACAAAGCCTGAATCCGCCACATTGGAAGACCTTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
||
| CDS-3UTR CCA 90 bp | ACACTGAAATTGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGATCCTCTGCCTTCTCTTCAGAGGAGATaGGAGCCACTGAGGGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: TLKLGLWPLQGFTLDPLPSLQRR*EPLRGG Trigger: TCCACCCCTCAGTGGCTCCCATCTCCTCTGAAGAGA...AGGCAGAGGATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAATTTCAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CAA 72 bp | TTGTCCTTTAGCCAGGGCAGACCTGTGACTGTCACCTaGGTGCATGGGGGAGGGGTTTCTAGTGAGAACACA | + |
|
Preference number: 4 (lower is better) Translates to: LSFSQGRPVTVT*VHGGGVSSENT Trigger: TGTGTTCTCACTAGAAACCCCTCCCCCATGCACCAAGGTGACAGTCACAGGTCTGCCCTGGCTAAAGGACAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR TCA 90 bp | CAAGTACACACATGCACAAGTCCCTACACTGAAATTGGGTTTGTGGCCACTCCAAGGGCAGCAGCCTGGTaGTCCAGATGCTTCATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: QVHTCTSPYTEIGFVATPRAAAW*SRCFMA Trigger: CGCCATGAAGCATCTGGATCACCAGGCTGCTGCCCT...TGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR TCA 90 bp | ACCTCATGCAAGAAAAGACACAACAGCGGTGTTGATGGTGATGGTGGTGCGCTCTGGCACCAGGACGTATaGGTTACTGCCACAGCTACG | + |
|
Preference number: 4 (lower is better) Translates to: TSCKKRHNSGVDGDGGALWHQDV*VTATAT Trigger: CGTAGCTGTGGCAGTAACTCATACGTCCTGGTGCCA...GAGCGCACCACCATCACCATCAACACCGCTGTTGTGTCTTTTCTTGCATGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR GCA 90 bp | ATGGTGATGGTGGTGCGCTCTGTACAGGGGATAGAGGGAGACATAGGGCAGATACAGTTTCTGGGGATCTaGAGTGGCATGGATGGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: MVMVVRSVQGIEGDIGQIQFLGI*SGMDGF Trigger: GAACCCATCCATGCCACTGCAGATCCCCAGAAACTG...TATCTGCCCTATGTCTCCCTCTATCCCCTGTACAGAGCGCACCACCATCACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| CDS-3UTR CCA 90 bp | GGGATTCGTGAGGTCATCTTGTCGCACATGATTTCGCATTTCGTCATGCCGAGGAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: GIREVILSHMISHFVMPRSRVHK*KNAARR Trigger: GCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCT...CCTCGGCATGACGAAATGCGAAATCATGTGCGACAAGATGACCTCACGAATCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
||
| CDS-3UTR CCA 90 bp | TGCCAGCTCTGGACCACGTTTCTTTCCTTTTACAGGTGGGGCACTTTGTGGTGCTCTGGGGATCTGCAGTaGCATGGATGGGTTCCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: CQLWTTFLSFYRWGTLWCSGDLQ*HGWVPL Trigger: TAGAGGAACCCATCCATGCCACTGCAGATCCCCAGA...GCACCACAAAGTGCCCCACCTGTAAAAGGAAAGAAACGTGGTCCAGAGCTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
||
| 3UTR CAA 72 bp | CGGATGAGCAAAGCCACTGGGATTCGTGAGGTCATCTaGTCGCACATGATTTCGCATTTCGTCATGCCGAGG | + |
|
Preference number: 4 (lower is better) Translates to: RMSKATGIREVI*SHMISHFVMPR Trigger: CCTCGGCATGACGAAATGCGAAATCATGTGCGACAAGATGACCTCACGAATCCCAGTGGCTTTGCTCATCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
||
| CDS-3UTR GCA 90 bp | AACTTTCAAAGTCCTCCTCAGATTGTTACGGCCCACATTCTGCTCTGGGAGGGAGGACGTATGAGTTACTaGCACAGCTACGGGGGACGT | + |
|
Preference number: 4 (lower is better) Translates to: NFQSPPQIVTAHILLWEGGRMSY*HSYGGR Trigger: ACGTCCCCCGTAGCTGTGGCAGTAACTCATACGTCC...TCCCTCCCAGAGCAGAATGTGGGCCGTAACAATCTGAGGAGGACTTTGAAAGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CCA 90 bp | AGGTGTCACATTGTCCACCCGCTTCTCAAACTTGCCACCATTTTTAGTGAGGGCAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: RCHIVHPLLKLATIFSEGSRVHK*KNAARR Trigger: GCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCT...GCCCTCACTAAAAATGGTGGCAAGTTTGAGAAGCGGGTGGACAATGTGACACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000150307.2 ENSMUST00000211947.2 |
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| CDS-3UTR CCA 90 bp | CTGTTGTTTACCACTGATCTTAAGGTCAGCGAGGAGATAGCCTGTGGGCCTGAAAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: LLFTTDLKVSEEIACGPESRVHK*KNAARR Trigger: GCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCT...TTCAGGCCCACAGGCTATCTCCTCGCTGACCTTAAGATCAGTGGTAAACAACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211956.2 |
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| CDS-3UTR CCA 90 bp | CTCAAGCCACTCCTTGCCAGCCCTCAGAATCACAGGGTACAAAAATGTCAGTCCTGCTTCATGGCGTCTTaGACCCATTTCTCCTTCGGG | + |
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Preference number: 4 (lower is better) Translates to: LKPLLASPQNHRVQKCQSCFMAS*THFSFG Trigger: CCCGAAGGAGAAATGGGTCCAAGACGCCATGAAGCA...GGACTGACATTTTTGTACCCTGTGATTCTGAGGGCTGGCAAGGAGTGGCTTGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CAA 72 bp | GCATACAGGGTACGATCTGCACTCTCAAGCCACTCCTaGCCAGCCCTCAGAATCACAGGGTACAAAAATGTC | + |
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Preference number: 4 (lower is better) Translates to: AYRVRSALSSHS*PALRITGYKNV Trigger: GACATTTTTGTACCCTGTGATTCTGAGGGCTGGCAAGGAGTGGCTTGAGAGTGCAGATCGTACCCTGTATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| 3UTR CAA 72 bp | TGCAAGTACACACATGCACAAGTCCCTACACTGAAATaGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: CKYTHAQVPTLK*GLWPLQGFTLD Trigger: ATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR TCA 90 bp | ACATATGGATGTGCAAACATGCTCCATCTCGCCAAGAATGAAGGGCAGACGGAGATACAGTGGTGTGCATaGGTTTGTGCTCAGCACAAC | + |
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Preference number: 4 (lower is better) Translates to: TYGCANMLHLAKNEGQTEIQWCA*VCAQHN Trigger: GTTGTGCTGAGCACAAACTCATGCACACCACTGTAT...CTCCGTCTGCCCTTCATTCTTGGCGAGATGGAGCATGTTTGCACATCCATATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
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| 3UTR CAA 72 bp | CCTAAAGGATCAACAACTTTCAAAGTCCTCCTCAGATaGTTACGGCCCACATTCTGCTCTGGGAGGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: PKGSTTFKVLLR*LRPTFCSGREE Trigger: TTCCTCCCTCCCAGAGCAGAATGTGGGCCGTAACAATCTGAGGAGGACTTTGAAAGTTGTTGATCCTTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CCA 90 bp | CACACATGCACAAGTCCCTACACTGAAATTGGGTTTGTGGCCACTCCAGGGGTTATTATCAGTATGAACTaGGTTTATCTCCTCAGACCC | + |
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Preference number: 4 (lower is better) Translates to: HTCTSPYTEIGFVATPGVIISMN*VYLLRP Trigger: GGGTCTGAGGAGATAAACCCAGTTCATACTGATAAT...AACCCCTGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS CCA 90 bp | GCGTCTGTGCTGTGTCGTCTCCAGGCCGGCAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGCAGCAGCCACGCGAGCGGCGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: ASVLCRLQAGSRVHK*KNAARRSSHASGEG Trigger: TCCCTCGCCGCTCGCGTGGCTGCTGCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCTGCCGGCCTGGAGACGACACAGCACAGACGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211947.2 |
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| CDS-3UTR CAA 90 bp | TTGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGATCCTCTGCCTCCGAGGGGCGAGGGGTGGACTGTGTaGCCAGGCCCCCTCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LGLWPLQGFTLDPLPPRGEGWTV*PGPLSW Trigger: CCAGGAGAGGGGGCCTGGCAACACAGTCCACCCCTC...GCCCCTCGGAGGCAGAGGATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CAA 90 bp | CCTGCAATGGGGGCAAAGGTGAGTCCTTGGCGTGAACACTGCTCTCAGAGACAGCCACTGCCTGCCTCCTaGTGGCTGCCTGGGTGTCGG | + |
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Preference number: 5 (lower is better) Translates to: PAMGAKVSPWREHCSQRQPLPAS*WLPGCR Trigger: CCGACACCCAGGCAGCCACAAGGAGGCAGGCAGTGG...CTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS CCA 90 bp | TGGGATAAGGAGTTCAGGAGAAAAGCCGGCAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGCAGCAGCCACGCGAGCGGCGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: WDKEFRRKAGSRVHK*KNAARRSSHASGEG Trigger: TCCCTCGCCGCTCGCGTGGCTGCTGCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCTGCCGGCTTTTCTCCTGAACTCCTTATCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
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| CDS-3UTR CAA 90 bp | CCTGCAATGGGGGCAAAGGTGAGTCCTTGGCGTGAACACTGCTCTCAGAGACAGTGCTGCCGGTGGCTCTaGGGAAGTCCCCATGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: PAMGAKVSPWREHCSQRQCCRWL*GSPHGP Trigger: GGGACCATGGGGACTTCCCAAGAGCCACCGGCAGCA...CTGTCTCTGAGAGCAGTGTTCACGCCAAGGACTCACCTTTGCCCCCATTGCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CAA 90 bp | TTGGGTTTGTGGCCACTCCAGGGGTTTACCCTGGATCCTCTGCCTCCGAGGGGCATCCCAGGTGTCACATaGTCCACCCGCTTCTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: LGLWPLQGFTLDPLPPRGIPGVT*STRFSN Trigger: GTTTGAGAAGCGGGTGGACAATGTGACACCTGGGAT...GCCCCTCGGAGGCAGAGGATCCAGGGTAAACCCCTGGAGTGGCCACAAACCCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS CCA 90 bp | ATCTCCTCAGACCCTAGAGACTTCTCTGGACTGAGGTCCTGTCCCTaGACCCATGGGGGTTGGCCTTCGGACCCAACATTTTCCTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: ISSDPRDFSGLRSCP*THGGWPSDPTFSSG Trigger: CCCAGAGGAAAATGTTGGGTCCGAAGGCCAACCCCCATGGGTCCAGGGACAGGACCTCAGTCCAGAGAAGTCTCTAGGGTCTGAGGAGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CAA 90 bp | TCCTTCGGGTCAGCACAGAAGCGTCTGTGCTGTGTCGTCTCCAGGACAATGGCAGTGGTGTGCATGAGTTaGTGCTCAGCACAACCCCCG | + |
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Preference number: 5 (lower is better) Translates to: SFGSAQKRLCCVVSRTMAVVCMS*CSAQPP Trigger: CGGGGGTTGTGCTGAGCACAAACTCATGCACACCAC...TGCCATTGTCCTGGAGACGACACAGCACAGACGCTTCTGTGCTGACCCGAAGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135970.2 |
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| CDS GCA 90 bp | GGTGTCGGGGACAGGAGTGATAAGCACACTCAGTTTCTGGGGATCTaGAGTGGCATGGATGGGTTCCTCTATCTTAGGAGCCTGGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: GVGDRSDKHTQFLGI*SGMDGFLYLRSLAA Trigger: GGCAGCCAGGCTCCTAAGATAGAGGAACCCATCCATGCCACTGCAGATCCCCAGAAACTGAGTGTGCTTATCACTCCTGTCCCCGACACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS CCA 90 bp | ACAGGAGTGATAAGCACACTCAGTTTCTGGGGATCTGCAGTGGCATaGATGGGTTCCTCTATCTTAGGAGCCTGGCTGCCCGAGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: TGVISTLSFWGSAVA*MGSSILGAWLPEAT Trigger: GGTGGCCTCGGGCAGCCAGGCTCCTAAGATAGAGGAACCCATCCATGCCACTGCAGATCCCCAGAAACTGAGTGTGCTTATCACTCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CAA 90 bp | GTGAACACTGCTCTCAGAGACAGGAAAGGACCCTGGCAGCCTCTGTCTGACTATCCTGTGCCTCGGAAGTaGAGAGAGATGATCCGGTCA | + |
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Preference number: 5 (lower is better) Translates to: VNTALRDRKGPWQPLSDYPVPRK*REMIRS Trigger: TGACCGGATCATCTCTCTCAACTTCCGAGGCACAGG...ATAGTCAGACAGAGGCTGCCAGGGTCCTTTCCTGTCTCTGAGAGCAGTGTTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CAA 90 bp | CCACGTTTCTTTCCTTTTACAGGTGGGGCACTTTGTGGTGCTGGTAGCCGAGTGATGCTTCATGGCGTCTaGGACCCATTTCTCCTTCGG | + |
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Preference number: 5 (lower is better) Translates to: PRFFPFTGGALCGAGSRVMLHGV*DPFLLR Trigger: CCGAAGGAGAAATGGGTCCAAGACGCCATGAAGCAT...CACTCGGCTACCAGCACCACAAAGTGCCCCACCTGTAAAAGGAAAGAAACGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS-3UTR CAA 90 bp | CAAGTACACACATGCACAAGTCCCTACACTGAAATTGGGTTTGTGGCCACTCCATGGCGGATTCAGGCTTaGTCAGGGCAGATGGGGACA | + |
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Preference number: 5 (lower is better) Translates to: QVHTCTSPYTEIGFVATPWRIQA*SGQMGT Trigger: TGTCCCCATCTGCCCTGACAAAGCCTGAATCCGCCA...TGGAGTGGCCACAAACCCAATTTCAGTGTAGGGACTTGTGCATGTGTGTACTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS CCA 72 bp | CTGTGTCGTCTCCAGGCCGGCAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGCAGCAGCCACGCGAGC | + |
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Preference number: 6 (lower is better) Translates to: LCRLQAGSRVHK*KNAARRSSHAS Trigger: GCTCGCGTGGCTGCTGCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCTGCCGGCCTGGAGACGACACAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211947.2 |
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| CDS CCA 72 bp | GAGTTCAGGAGAAAAGCCGGCAGCAGAGTACACAAATaGAAGAACGCGGCCAGGCGCAGCAGCCACGCGAGC | + |
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Preference number: 6 (lower is better) Translates to: EFRRKAGSRVHK*KNAARRSSHAS Trigger: GCTCGCGTGGCTGCTGCGCCTGGCCGCGTTCTTCCATTTGTGTACTCTGCTGCCGGCTTTTCTCCTGAACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
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| CDS CCA 72 bp | AGACTTCTCTGGACTGAGGTCCTGTCCCTGGACCCATaGGGGTTGGCCTTCGGACCCAACATTTTCCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: RLLWTEVLSLDP*GLAFGPNIFLW Trigger: CCAGAGGAAAATGTTGGGTCCGAAGGCCAACCCCCATGGGTCCAGGGACAGGACCTCAGTCCAGAGAAGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS CCA 72 bp | GACCCTAGAGACTTCTCTGGACTGAGGTCCTGTCCCTaGACCCATGGGGGTTGGCCTTCGGACCCAACATTT | + |
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Preference number: 6 (lower is better) Translates to: DPRDFSGLRSCP*THGGWPSDPTF Trigger: AAATGTTGGGTCCGAAGGCCAACCCCCATGGGTCCAGGGACAGGACCTCAGTCCAGAGAAGTCTCTAGGGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS TCA 72 bp | GGTGCTGACCTCCCTGGGAAGTGTGTGAGTGTCTGCTaGGCAGATCCCCCTGTGTTCTGCAGAATGAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: GADLPGKCVSVC*ADPPVFCRMSL Trigger: CAAACTCATTCTGCAGAACACAGGGGGATCTGCTCAGCAGACACTCACACACTTCCCAGGGAGGTCAGCACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150307.2 |
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| CDS TCA 72 bp | TCGCACATGATTTCGCATTTCGTCATGCCGAGGTGCTaGCCCGGCAGCAGAGTACACAAATGGAAGAACGCG | + |
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Preference number: 6 (lower is better) Translates to: SHMISHFVMPRC*PGSRVHKWKNA Trigger: CGCGTTCTTCCATTTGTGTACTCTGCTGCCGGGTCAGCACCTCGGCATGACGAAATGCGAAATCATGTGCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034230.7 ENSMUST00000211956.2 |
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| CDS TCA 72 bp | AAGCCACTGGGATTCGTGAGGTCATCTTGTCGCACATaGTTTCGCATTTCGTCATGCCGAGGTGCTGACCCG | + |
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Preference number: 6 (lower is better) Translates to: KPLGFVRSSCRT*FRISSCRGADP Trigger: CGGGTCAGCACCTCGGCATGACGAAATGCGAAATCATGTGCGACAAGATGACCTCACGAATCCCAGTGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034230.7 ENSMUST00000211956.2 |
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| CDS CCA 72 bp | ATAAGCACACTCAGTTTCTGGGGATCTGCAGTGGCATaGATGGGTTCCTCTATCTTAGGAGCCTGGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: ISTLSFWGSAVA*MGSSILGAWLP Trigger: GGGCAGCCAGGCTCCTAAGATAGAGGAACCCATCCATGCCACTGCAGATCCCCAGAAACTGAGTGTGCTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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| CDS GCA 72 bp | GACAGGAGTGATAAGCACACTCAGTTTCTGGGGATCTaGAGTGGCATGGATGGGTTCCTCTATCTTAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: DRSDKHTQFLGI*SGMDGFLYLRS Trigger: GCTCCTAAGATAGAGGAACCCATCCATGCCACTGCAGATCCCCAGAAACTGAGTGTGCTTATCACTCCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034230.7 |
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