Pregenerated sensors for CWC15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004096Ensembl transcript IDs: ENSMUST00000004200.9, ENSMUST00000213913.2, ENSMUST00000215143.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAACCTTGAAGTTGGCCTaGGGCTGGGACGGGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGTLKLA*GWDGPV Trigger: CACTGGCCCGTCCCAGCCTCAGGCCAACTTCAAGGT...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR TCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAGGGAAGATCTCTGCTTaGATACTGCTTGGAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGGKISA*ILLGEL Trigger: CAGCTCTCCAAGCAGTATTCAAGCAGAGATCTTCCC...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR TCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACTTCCAGTTCTCTCCTaGAGTCACGGTTTCGAACCT | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGLPVLS*SHGFEP Trigger: AGGTTCGAAACCGTGACTTCAGGAGAGAACTGGAAG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR GCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATCCTCTCCCACCTCTTaGAGGTTCAAAAGTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGSSPTS*RFKSWP Trigger: AGGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR GCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACCTGTTTTTGTCCCTTaGAGCAGCTCTCTCTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGPVFVP*SSSLSL Trigger: GAGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATACTGCTTGGAGAGCTaGCTCAAATCCCCTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGYCLES*LKSPSP Trigger: AGGAGAAGGGGATTTGAGCCAGCTCTCCAAGCAGTA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACGTCAGCATCAAGGTTaGCAGCAGGAATCTGGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGRQHQG*QQESGL Trigger: TAGACCAGATTCCTGCTGCCAACCTTGATGCTGACG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATGCAGGTTCAAAAGTTaGCCTGGCTGCTGTTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGCRFKS*PGCCCH Trigger: ATGACAACAGCAGCCAGGCCAACTTTTGAACCTGCA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATGCTTGAATACTGCTTaGAGAGCTGGCTCAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGCLNTA*RAGSNP Trigger: GGGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAGTTCTTGTTCCTTCCTaGCCTGCTCTTCAGCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGVLVPS*PALQLF Trigger: AAAGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAAC...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR TCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACAGCTCTTTCCTTCTTaGTCTTTTCTAGCTCTGCGA | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGQLFPS*SFLALR Trigger: TCGCAGAGCTAGAAAAGATCAAGAAGGAAAGAGCTG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR GCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATCTCTGCTTGAATACTaGTTGGAGAGCTGGCTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGSLLEY*LESWLK Trigger: TTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR GCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAGAGAGGGAAGATCTCTaGTTGAATACTGCTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGEREDL*LNTAWR Trigger: TCTCCAAGCAGTATTCAAGCAGAGATCTTCCCTCTC...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACAGGGGCATCCTGTGTaGTTTGTCTGTACTTTATCT | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGQGHPV*FVCTLS Trigger: AGATAAAGTACAGACAAACCACACAGGATGCCCCTG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR TCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATCCATGAACTTCTTGTaGAATTCAGATCGCAGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGSMNFL*NSDRSV Trigger: TACACTGCGATCTGAATTTCACAAGAAGTTCATGGA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR TCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATACTTTATCTTTGTATaGGAGGGAAGATCTCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGYFIFV*EGRSLL Trigger: AAGCAGAGATCTTCCCTCTCATACAAAGATAAAGTA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR GCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAAATTCTCTCTTCCTCTaGTTTTTGTTCTTGTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGNSLFL*FLFLFL Trigger: AAGGAACAAGAACAAAAAGCAGAGGAAGAGAGAATT...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR GCA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAGTCATCTATACCTTTTaGACAGTTCTTAAAAACGAC | + |
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Preference number: 4 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGVIYTF*TVLKND Trigger: GTCGTTTTTAAGAACTGTGCAAAAGGTATAGATGAC...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS TCA 90 bp | TTTTGTCCCTTGCAGCAGCTCTCTCTCTCTCTTCCAGTTCTCTCCTaGAGTCACGGTTTCGAACCTCTTCAGGGGCATCCTGTGTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FCPLQQLSLSLPVLS*SHGFEPLQGHPVWF Trigger: AAACCACACAGGATGCCCCTGAAGAGGTTCGAAACCGTGACTTCAGGAGAGAACTGGAAGAGAGAGAGAGAGCTGCTGCAAGGGACAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 ENSMUST00000215143.2 |
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| CDS TCA 90 bp | AAAACGACATCATCATCCCATCTTCTTTTAACCTTGAAGTTGGCCTaGGGCTGGGACGGGCCAGTGAGGTTTAGGAGAGGGTTTCCACTC | + |
|
Preference number: 5 (lower is better) Translates to: KTTSSSHLLLTLKLA*GWDGPVRFRRGFPL Trigger: GAGTGGAAACCCTCTCCTAAACCTCACTGGCCCGTCCCAGCCTCAGGCCAACTTCAAGGTTAAAAGAAGATGGGATGATGATGTCGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS TCA 90 bp | CATCGTCATCGCTCTCCTCTTCAAAATCTTCATCTTCCTCGTCTGTaGGAGGATCGTCAGCATCAAGGTTGGCAGCAGGAATCTGGTCTA | + |
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Preference number: 5 (lower is better) Translates to: HRHRSPLQNLHLPRL*EDRQHQGWQQESGL Trigger: TAGACCAGATTCCTGCTGCCAACCTTGATGCTGACGATCCTCTCACAGACGAGGAAGATGAAGATTTTGAAGAGGAGAGCGATGACGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAGGGCGGTCCCTGTTTTaGTCCCTTGCAGCAGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGGRSLF*SLAAAL Trigger: GAGAGCTGCTGCAAGGGACAAAAACAGGGACCGCCC...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS GCA 90 bp | GTGTGGTTTGTCTGTACTTTATCTTTGTATGAGAGGGAAGATCTCTaGTTGAATACTGCTTGGAGAGCTGGCTCAAATCCCCTTCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: VWFVCTLSLYEREDL*LNTAWRAGSNPLLL Trigger: AAGGAGAAGGGGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGATCTTCCCTCTCATACAAAGATAAAGTACAGACAAACCACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 ENSMUST00000215143.2 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATTCCTCTCCCACCTCTaGCAGGTTCAAAAGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGFLSHL*QVQKLA Trigger: GGCCAACTTTTGAACCTGCAAGAGGTGGGAGAGGAA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACCCTGTTTTTGTCCCTaGCAGCAGCTCTCTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGPCFCP*QQLSLS Trigger: AGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGGG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATCGTCAGCATCAAGGTaGGCAGCAGGAATCTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGSSASR*AAGIWS Trigger: AGACCAGATTCCTGCTGCCAACCTTGATGCTGACGA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGATTGCAGGTTCAAAAGTaGGCCTGGCTGCTGTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGLQVQK*AWLLLS Trigger: TGACAACAGCAGCCAGGCCAACTTTTGAACCTGCAA...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACTGCTTGAATACTGCTaGGAGAGCTGGCTCAAATCC | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGLLEYC*ESWLKS Trigger: GGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAACACTGAAGAGGAAGTaGTATGCTCTCGAGTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGTLKRK*YALELG Trigger: GCCCAACTCGAGAGCATACAACTTCCTCTTCAGTGT...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGACTAAGCGGGGCTTCTTaGACACTGAAGAGGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGLSGAS*TLKRKL Trigger: CAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCTTAG...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAAGGGAAGATCTCTGCTaGAATACTGCTTGGAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGREDLC*NTAWRA Trigger: AGCTCTCCAAGCAGTATTCAAGCAGAGATCTTCCCT...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS-3UTR CAA 90 bp | TATCTAATAAAGTACTACACTAAGGGAAAGAGACTGAGAAAGTTAACACTGGGAGGCATCCTGTGTGGTTaGTCTGTACTTTATCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: YLIKYYTKGKRLRKLTLGGILCG*SVLYLC Trigger: ACAAAGATAAAGTACAGACAAACCACACAGGATGCC...TCCCAGTGTTAACTTTCTCAGTCTCTTTCCCTTAGTGTAGTACTTTATTAGATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004200.9 |
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| CDS CAA 90 bp | CAGCATCAAGGTTGGCAGCAGGAATCTGGTCTAAGCGGGGCTTCTTaGACACTGAAGAGGAAGTTGTATGCTCTCGAGTTGGGCGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: QHQGWQQESGLSGAS*TLKRKLYALELGGP Trigger: GGGACCGCCCAACTCGAGAGCATACAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCTTAGACCAGATTCCTGCTGCCAACCTTGATGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS GCA 72 bp | ATGCTCTCGAGTTGGGCGGTCCCTGTTTTTGTCCCTTaGAGCAGCTCTCTCTCTCTCTTCCAGTTCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: MLSSWAVPVFVP*SSSLSLFQFSP Trigger: AGGAGAGAACTGGAAGAGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 72 bp | TATGCTCTCGAGTTGGGCGGTCCCTGTTTTTGTCCCTaGCAGCAGCTCTCTCTCTCTCTTCCAGTTCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: YALELGGPCFCP*QQLSLSLPVLS Trigger: GGAGAGAACTGGAAGAGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 90 bp | AGCGGGGCTTCTTTGACACTGAAGAGGAAGTTGTATGCTCTCGAGTaGGGCGGTCCCTGTTTTTGTCCCTTGCAGCAGCTCTCTCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SGASLTLKRKLYALE*GGPCFCPLQQLSLS Trigger: AGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCATACAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS TCA 72 bp | TTGCAGCAGCTCTCTCTCTCTCTTCCAGTTCTCTCCTaGAGTCACGGTTTCGAACCTCTTCAGGGGCATCCT | + |
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Preference number: 6 (lower is better) Translates to: LQQLSLSLPVLS*SHGFEPLQGHP Trigger: AGGATGCCCCTGAAGAGGTTCGAAACCGTGACTTCAGGAGAGAACTGGAAGAGAGAGAGAGAGCTGCTGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 ENSMUST00000215143.2 |
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| CDS TCA 72 bp | TCATCATCCCATCTTCTTTTAACCTTGAAGTTGGCCTaGGGCTGGGACGGGCCAGTGAGGTTTAGGAGAGGG | + |
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Preference number: 6 (lower is better) Translates to: SSSHLLLTLKLA*GWDGPVRFRRG Trigger: CCCTCTCCTAAACCTCACTGGCCCGTCCCAGCCTCAGGCCAACTTCAAGGTTAAAAGAAGATGGGATGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 72 bp | GAAGTTGTATGCTCTCGAGTTGGGCGGTCCCTGTTTTaGTCCCTTGCAGCAGCTCTCTCTCTCTCTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: EVVCSRVGRSLF*SLAAALSLSSS Trigger: ACTGGAAGAGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCATACAACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 90 bp | ACTGAAGAGGAAGTTGTATGCTCTCGAGTTGGGCGGTCCCTGTTTTaGTCCCTTGCAGCAGCTCTCTCTCTCTCTTCCAGTTCTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: TEEEVVCSRVGRSLF*SLAAALSLSSSSLL Trigger: CAGGAGAGAACTGGAAGAGAGAGAGAGAGCTGCTGCAAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCATACAACTTCCTCTTCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 90 bp | CAGGAATCTGGTCTAAGCGGGGCTTCTTTGACACTGAAGAGGAAGTaGTATGCTCTCGAGTTGGGCGGTCCCTGTTTTTGTCCCTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: QESGLSGASLTLKRK*YALELGGPCFCPLQ Trigger: CTGCAAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCATACAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCTTAGACCAGATTCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS GCA 72 bp | AAGCGGGGCTTCTTTGACACTGAAGAGGAAGTTGTATaGTCTCGAGTTGGGCGGTCCCTGTTTTTGTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: KRGFFDTEEEVV*SRVGRSLFLSL Trigger: AAGGGACAAAAACAGGGACCGCCCAACTCGAGAGCATACAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 72 bp | GGTCTAAGCGGGGCTTCTTTGACACTGAAGAGGAAGTaGTATGCTCTCGAGTTGGGCGGTCCCTGTTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: GLSGASLTLKRK*YALELGGPCFC Trigger: ACAAAAACAGGGACCGCCCAACTCGAGAGCATACAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCTTAGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 72 bp | GGTTGGCAGCAGGAATCTGGTCTAAGCGGGGCTTCTTaGACACTGAAGAGGAAGTTGTATGCTCTCGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: GWQQESGLSGAS*TLKRKLYALEL Trigger: CAACTCGAGAGCATACAACTTCCTCTTCAGTGTCAAAGAAGCCCCGCTTAGACCAGATTCCTGCTGCCAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS CAA 90 bp | AAATCTTCATCTTCCTCGTCTGTGAGAGGATCGTCAGCATCAAGGTaGGCAGCAGGAATCTGGTCTAAGCGGGGCTTCTTTGACACTGAA | + |
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Preference number: 6 (lower is better) Translates to: KSSSSSSVRGSSASR*AAGIWSKRGFFDTE Trigger: TTCAGTGTCAAAGAAGCCCCGCTTAGACCAGATTCCTGCTGCCAACCTTGATGCTGACGATCCTCTCACAGACGAGGAAGATGAAGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 |
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| CDS GCA 72 bp | GTCTGTACTTTATCTTTGTATGAGAGGGAAGATCTCTaGTTGAATACTGCTTGGAGAGCTGGCTCAAATCCC | + |
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Preference number: 6 (lower is better) Translates to: VCTLSLYEREDL*LNTAWRAGSNP Trigger: GGGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGATCTTCCCTCTCATACAAAGATAAAGTACAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 ENSMUST00000215143.2 |
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| CDS CAA 90 bp | TGGTTTGTCTGTACTTTATCTTTGTATGAGAGGGAAGATCTCTGCTaGAATACTGCTTGGAGAGCTGGCTCAAATCCCCTTCTCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: WFVCTLSLYEREDLC*NTAWRAGSNPLLLF Trigger: GAAAAGGAGAAGGGGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGATCTTCCCTCTCATACAAAGATAAAGTACAGACAAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 ENSMUST00000215143.2 |
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| CDS CAA 72 bp | TGTACTTTATCTTTGTATGAGAGGGAAGATCTCTGCTaGAATACTGCTTGGAGAGCTGGCTCAAATCCCCTT | + |
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Preference number: 6 (lower is better) Translates to: CTLSLYEREDLC*NTAWRAGSNPL Trigger: AAGGGGATTTGAGCCAGCTCTCCAAGCAGTATTCAAGCAGAGATCTTCCCTCTCATACAAAGATAAAGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004200.9 ENSMUST00000213913.2 ENSMUST00000215143.2 |
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