Pregenerated sensors for CUTC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025193Ensembl transcript IDs: ENSMUST00000026199.14, ENSMUST00000112047.10, ENSMUST00000153295.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACCTCCCTTCACACTGTTaGTGCCCATGTCTCTCCGAC | + |
|
Preference number: 2 (lower is better) Translates to: HTLQLNFASSSVKPTENDLPSHC*CPCLSD Trigger: GTCGGAGAGACATGGGCATCAACAGTGTGAAGGGAG...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| 3UTR-3UTR TCA 90 bp | AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTCTCCCTTCACACTGTTaGTGCCCATGTCTCTCCGAC | + |
|
Preference number: 2 (lower is better) Translates to: SSSVKPTENDYASLLVRSLPSHC*CPCLSD Trigger: GTCGGAGAGACATGGGCATCAACAGTGTGAAGGGAG...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| 3UTR-3UTR CCA 90 bp | AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTTCTTACAAACATCTATaGCCATGTGAAAGGTTAGAG | + |
|
Preference number: 2 (lower is better) Translates to: SSSVKPTENDYASLLVRSSYKHL*PCERLE Trigger: CTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| 3UTR-3UTR CAA 90 bp | GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGATCTCCCTTCACACTGTaGATGCCCATGTCTCTCCGA | + |
|
Preference number: 3 (lower is better) Translates to: ASSSVKPTENDYASLLVRSPFTL*MPMSLR Trigger: TCGGAGAGACATGGGCATCAACAGTGTGAAGGGAGA...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| 3UTR-3UTR CAA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTTCTCCCTTCACACTGTaGATGCCCATGTCTCTCCGA | + |
|
Preference number: 3 (lower is better) Translates to: KSGTKLTLKQTLISYFAASPFTL*MPMSLR Trigger: TCGGAGAGACATGGGCATCAACAGTGTGAAGGGAGA...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| 3UTR TCA 72 bp | GTACAGACTAAATTTATCCATGATGACAGACACCAATaGCTACTAAAGAAAGTAATTGCATTGCTGTTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: VQTKFIHDDRHQ*LLKKVIALLFQ Trigger: TTGGAACAGCAATGCAATTACTTTCTTTAGTAGTCATTGGTGTCTGTCATCATGGATAAATTTAGTCTGTAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAGTCTCCAGAGCTCTGTaGAAAGTGACCGGCAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ASSSVKPTENDYASLLVRVSRAL*KVTGRG Trigger: CCCTCTGCCGGTCACTTTCCACAGAGCTCTGGAGAC...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026199.14 |
||
| CDS-3UTR GCA 90 bp | CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACAGCACCTCCTCTTTCTaGATTCACAGCGGACTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: HTLQLNFASSSVKPTENDSTSSF*IHSGLH Trigger: GTGGAGTCCGCTGTGAATGCAGAAAGAGGAGGTGCT...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTCACCCATACTGGGTGTaGTTCCTCCCTCCAGTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: SSSVKPTENDYASLLVRSHPYWV*FLPPVD Trigger: GTCTACTGGAGGGAGGAACCACACCCAGTATGGGTG...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACGATCGGGCAGAGCAGTaGAATTCTGTAGCACCGGAA | + |
|
Preference number: 4 (lower is better) Translates to: HTLQLNFASSSVKPTENDDRAEQ*NSVAPE Trigger: TTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATC...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAGCTCTGTGGAAAGTaGCCGGCAGAGGGCGGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: KSGTKLTLKQTLISYFAAELCGK*PAEGGK Trigger: TTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCTC...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026199.14 |
||
| CDS-3UTR TCA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTAGGCTCTGTGGAAAGTaGCCGGCAGAGGGCGGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: KSGTKLTLKQTLISYFAARLCGK*PAEGGK Trigger: TTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCCT...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCACACCCATACTGGGTGTaGTTCCTCCCTCCAGTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: SYKHLWPCERLELRQVLSHPYWV*FLPPVD Trigger: GTCTACTGGAGGGAGGAACCACACCCAGTATGGGTG...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: SSSVKPTENDYASLLVRSSCRIH*SGRVQI Trigger: GATTTGAACGCGTCCTGACCAGTGGATGCGACAGCT...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCGATCGGGCAGAGCAGTaGAATTCTGTAGCACCGGAA | + |
|
Preference number: 4 (lower is better) Translates to: YKHLWPCERLELRQVLSVDRAEQ*NSVAPE Trigger: TTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATC...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | CGCCTCTCTTCTTGTAAGAAGTACAGACTAAATTTATCCATGATGACAGACACCAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: RLSSCKKYRLNLSMMTDTSCRIH*SGRVQI Trigger: GATTTGAACGCGTCCTGACCAGTGGATGCGACAGCT...GGTGTCTGTCATCATGGATAAATTTAGTCTGTACTTCTTACAAGAAGAGAGGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCATATCAAAGGCTCTGTaGAAAGTGACCGGCAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: YKHLWPCERLELRQVLSVISKAL*KVTGRG Trigger: CCCTCTGCCGGTCACTTTCCACAGAGCCTTTGATAT...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCATCGAAACTTCATTCCTaGGTCTCTGGAAGATCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SYKHLWPCERLELRQVLSSKLHS*VSGRSG Trigger: GCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGA...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGAGAATATTCTGAATaGGCAAGCGAAGCTCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: ASSSVKPTENDYASLLVRREYSE*ASEAPI Trigger: AATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCT...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCTGTTATTCCACCTCCTaGCATTACCACAATCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: YKHLWPCERLELRQVLSVCYSTS*HYHNPA Trigger: GGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACA...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | CGCCTCTCTTCTTGTAAGAAGTACAGACTAAATTTATCCATGATGACAGACACCGCTGCCATTGGATCATaGACCATATCAAAGGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: RLSSCKKYRLNLSMMTDTAAIGS*TISKAL Trigger: CAGAGCCTTTGATATGGTTCATGATCCAATGGCAGC...GGTGTCTGTCATCATGGATAAATTTAGTCTGTACTTCTTACAAGAAGAGAGGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112047.10 |
||
| CDS-3UTR GCA 90 bp | ACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAACTTTGCAAGAAATCCATTTCCTaGTCCCGCCTTCCCCGACGA | + |
|
Preference number: 4 (lower is better) Translates to: TKLTLKQTLISYFAAELCKKSIS*SRLPRR Trigger: TCGTCGGGGAAGGCGGGAGCAGGAAATGGATTTCTT...GCAAAGTTCAGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTCGGCACCATAAAGCTTaGCAAGGCGAATGTCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: KSGTKLTLKQTLISYFAARHHKA*QGECQP Trigger: AGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCG...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACACAAACACTGGGATCTaGACACTCTGTTTTACTACT | + |
|
Preference number: 4 (lower is better) Translates to: HTLQLNFASSSVKPTENDTNTGI*TLCFTT Trigger: AGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGT...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | ACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAACTTTGCTCGAAACTTCATTCCTaGGTCTCTGGAAGATCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TKLTLKQTLISYFAAELCSKLHS*VSGRSG Trigger: GCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGA...GCAAAGTTCAGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTACAAACACTGGGATCTaGACACTCTGTTTTACTACT | + |
|
Preference number: 4 (lower is better) Translates to: SSSVKPTENDYASLLVRSTNTGI*TLCFTT Trigger: AGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGT...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR TCA 90 bp | TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAAGAGAATATTCTGAATaGGCAAGCGAAGCTCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: SYKHLWPCERLELRQVLSREYSE*ASEAPI Trigger: AATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCT...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR GCA 90 bp | TCTTTTTCTTCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGTCCATCTTCAGTCAATaGCCCAAACACCAAACCATC | + |
|
Preference number: 4 (lower is better) Translates to: SFSSYKHLWPCERLELRQSIFSQ*PKHQTI Trigger: GATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGA...CTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGAAGAAAAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCGATCATCACAAACACTaGGATCTGAACACTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: YKHLWPCERLELRQVLSVDHHKH*DLNTLF Trigger: AAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATC...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATT | + |
|
Preference number: 4 (lower is better) Translates to: YKHLWPCERLELRQVLSVILPFA*SMSCFI Trigger: AATAAAGCAACTCATAGACCAGGCAAAAGGCAGGAT...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTTGTTATTCCACCTCCTaGCATTACCACAATCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KSGTKLTLKQTLISYFAACYSTS*HYHNPA Trigger: GGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACA...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCACTCCAGAGCTGCCATTaGATCATGAACCATATCAAA | + |
|
Preference number: 4 (lower is better) Translates to: SYKHLWPCERLELRQVLSLQSCH*IMNHIK Trigger: TTTGATATGGTTCATGATCCAATGGCAGCTCTGGAG...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112047.10 |
||
| CDS-3UTR GCA 90 bp | ACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAACTTTGCTCCATCTTCAGTCAATaGCCCAAACACCAAACCATC | + |
|
Preference number: 4 (lower is better) Translates to: TKLTLKQTLISYFAAELCSIFSQ*PKHQTI Trigger: GATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGA...GCAAAGTTCAGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGATCATCACAAACACTaGGATCTGAACACTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: KSGTKLTLKQTLISYFAADHHKH*DLNTLF Trigger: AAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATC...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CCA 90 bp | AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATT | + |
|
Preference number: 4 (lower is better) Translates to: KSGTKLTLKQTLISYFAAILPFA*SMSCFI Trigger: AATAAAGCAACTCATAGACCAGGCAAAAGGCAGGAT...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS GCA 90 bp | GGACTCCACCGAATCTACACACACTTCCATAAGAAATCCATTTCCTaGTCCCGCCTTCCCCGACGATATCCACGCCTGTTTCCGCTCGCA | + |
|
Preference number: 5 (lower is better) Translates to: GLHRIYTHFHKKSIS*SRLPRRYPRLFPLA Trigger: TGCGAGCGGAAACAGGCGTGGATATCGTCGGGGAAGGCGGGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS CCA 90 bp | GCTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATCCTAAGGTTAGGAGGGTCTCCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: ALLEAVLPVLSCRIH*SGRVQILRLGGSPE Trigger: CTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS TCA 90 bp | TTCCACCTCCTGGCATTACCACAATCCTGCCTTTTGCCTGGTCTATaGGTTGCTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTGTCGC | + |
|
Preference number: 5 (lower is better) Translates to: FHLLALPQSCLLPGL*VALLEAVLPVLSCR Trigger: GCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS GCA 90 bp | CCTCCTGGCATTACCACAATCCTGCCTTTTGCCTGGTCTATGAGTTaGTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTGTCGCATCCA | + |
|
Preference number: 5 (lower is better) Translates to: PPGITTILPFAWSMS*FIRGSPSSAELSHP Trigger: TGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS TCA 90 bp | AAGCGAAGCTCCCATTGCGACAGAGGAATTTCGAAACTTCATTCCTaGGTCTCTGGAAGATCGGGCAGAGCAGTGGAATTCTGTAGCACC | + |
|
Preference number: 5 (lower is better) Translates to: KRSSHCDRGISKLHS*VSGRSGRAVEFCST Trigger: GGTGCTACAGAATTCCACTGCTCTGCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CCA 90 bp | TCTGTTATTCCACCTCCTGGCATTACCACAATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATTAGAGGCAGTCCTTCCAGTGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: SVIPPPGITTILPFA*SMSCFIRGSPSSAE Trigger: CTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CCA 90 bp | TTTCGAAACTTCATTCCTGAGTCTCTGGAAGATCGGGCAGAGCAGTaGAATTCTGTAGCACCGGAACCCTCAAGGATCCTTTGCAGATTT | + |
|
Preference number: 5 (lower is better) Translates to: FRNFIPESLEDRAEQ*NSVAPEPSRILCRF Trigger: AAATCTGCAAAGGATCCTTGAGGGTTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS GCA 90 bp | GCAGAGCAGTGGAATTCTGTAGCACCGGAACCCTCAAGGATCCTTTaGAGATTTTTATCTGTTATTCCACCTCCTGGCATTACCACAATC | + |
|
Preference number: 5 (lower is better) Translates to: AEQWNSVAPEPSRIL*RFLSVIPPPGITTI Trigger: GATTGTGGTAATGCCAGGAGGTGGAATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGTTCCGGTGCTACAGAATTCCACTGCTCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS-3UTR CAA 90 bp | GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAGACAAGCATAGCTCTTaGTCAATGTGTCCATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: ASSSVKPTENDYASLLVRDKHSS*SMCPSS Trigger: TGAAGATGGACACATTGACAAAGAGCTATGCTTGTC...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CAA 90 bp | GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAAACTAGGACGTCCTTaGCAATTGCATTCAAAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: ASSSVKPTENDYASLLVRKLGRP*QLHSKS Trigger: GGACTTTGAATGCAATTGCAAAGGACGTCCTAGTTT...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CAA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCTCTCCAGAGCTGCCATaGGATCATGAACCATATCAA | + |
|
Preference number: 5 (lower is better) Translates to: YKHLWPCERLELRQVLSVSPELP*DHEPYQ Trigger: TTGATATGGTTCATGATCCAATGGCAGCTCTGGAGA...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112047.10 |
||
| CDS-3UTR CAA 90 bp | TCTTTTTCTTCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGACAAGCATAGCTCTTaGTCAATGTGTCCATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SFSSYKHLWPCERLELRQDKHSS*SMCPSS Trigger: TGAAGATGGACACATTGACAAAGAGCTATGCTTGTC...CTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGAAGAAAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CAA 90 bp | AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTACCCTCAAGGATCCTTaGCAGATTTTTATCTGTTAT | + |
|
Preference number: 5 (lower is better) Translates to: SSSVKPTENDYASLLVRSTLKDP*QIFICY Trigger: ATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGT...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS-3UTR CAA 90 bp | TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCACCCTCAAGGATCCTTaGCAGATTTTTATCTGTTAT | + |
|
Preference number: 5 (lower is better) Translates to: YKHLWPCERLELRQVLSVTLKDP*QIFICY Trigger: ATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGT...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 |
||
| CDS CCA 72 bp | GAGGCAGTCCTTCCAGTGCTGAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATCCTAAGGTTAGGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: EAVLPVLSCRIH*SGRVQILRLGG Trigger: CCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS TCA 72 bp | CTAAGGTTAGGAGGGTCTCCAGAGCTCTGTGGAAAGTaGCCGGCAGAGGGCGGCAAAGAGCTACAAGAGACA | + |
|
Preference number: 6 (lower is better) Translates to: LRLGGSPELCGK*PAEGGKELQET Trigger: TGTCTCTTGTAGCTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCTCTGGAGACCCTCCTAACCTTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026199.14 |
||
| CDS GCA 72 bp | AGAGCACAGTTCAATCCGACCAGCACCTCCTCTTTCTaGATTCACAGCGGACTCCACCGAATCTACACACAC | + |
|
Preference number: 6 (lower is better) Translates to: RAQFNPTSTSSF*IHSGLHRIYTH Trigger: GTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAGGTGCTGGTCGGATTGAACTGTGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CCA 72 bp | ATGCCCCAAACACCAAACCATCGGCACCATAAAGCTTaGCAAGGCGAATGTCAGCCTTCATCACCTCAACTT | + |
|
Preference number: 6 (lower is better) Translates to: MPQTPNHRHHKA*QGECQPSSPQL Trigger: AAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CCA 72 bp | CCACCTCCTGGCATTACCACAATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATTAGAGGCAGTCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: PPPGITTILPFA*SMSCFIRGSPS Trigger: GGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS TCA 72 bp | CTGGCATTACCACAATCCTGCCTTTTGCCTGGTCTATaGGTTGCTTTATTAGAGGCAGTCCTTCCAGTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LALPQSCLLPGL*VALLEAVLPVL Trigger: CAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS GCA 72 bp | ATTACCACAATCCTGCCTTTTGCCTGGTCTATGAGTTaGTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ITTILPFAWSMS*FIRGSPSSAEL Trigger: CAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CAA 72 bp | CAAATCCTAAGGTTAGGAGGGTCTCCAGAGCTGCCATaGGATCATGAACCATATCAAAGGCTCTGTGGAAAG | + |
|
Preference number: 6 (lower is better) Translates to: QILRLGGSPELP*DHEPYQRLCGK Trigger: CTTTCCACAGAGCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CAA 90 bp | CTGTTACCTTTAGAGAATATTCTGAATGAGCAAGCGAAGCTCCCATaGCGACAGAGGAATTTCGAAACTTCATTCCTGAGTCTCTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: LLPLENILNEQAKLP*RQRNFETSFLSLWK Trigger: CTTCCAGAGACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCTAAAGGTAACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||
| CDS CAA 72 bp | TTAGAGAATATTCTGAATGAGCAAGCGAAGCTCCCATaGCGACAGAGGAATTTCGAAACTTCATTCCTGAGT | + |
|
Preference number: 6 (lower is better) Translates to: LENILNEQAKLP*RQRNFETSFLS Trigger: ACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026199.14 ENSMUST00000112047.10 ENSMUST00000153295.2 |
||