RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CUTC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025193

Ensembl transcript IDs: ENSMUST00000026199.14, ENSMUST00000112047.10, ENSMUST00000153295.2

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACCTCCCTTCACACTGTTaGTGCCCATGTCTCTCCGAC +
Preference number: 2 (lower is better)
Translates to: HTLQLNFASSSVKPTENDLPSHC*CPCLSD
Trigger: GTCGGAGAGACATGGGCATCAACAGTGTGAAGGGAG...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
3UTR-3UTR TCA 90 bp AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTCTCCCTTCACACTGTTaGTGCCCATGTCTCTCCGAC +
Preference number: 2 (lower is better)
Translates to: SSSVKPTENDYASLLVRSLPSHC*CPCLSD
Trigger: GTCGGAGAGACATGGGCATCAACAGTGTGAAGGGAG...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
3UTR-3UTR CCA 90 bp AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTTCTTACAAACATCTATaGCCATGTGAAAGGTTAGAG +
Preference number: 2 (lower is better)
Translates to: SSSVKPTENDYASLLVRSSYKHL*PCERLE
Trigger: CTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
3UTR-3UTR CAA 90 bp GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGATCTCCCTTCACACTGTaGATGCCCATGTCTCTCCGA +
Preference number: 3 (lower is better)
Translates to: ASSSVKPTENDYASLLVRSPFTL*MPMSLR
Trigger: TCGGAGAGACATGGGCATCAACAGTGTGAAGGGAGA...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
3UTR-3UTR CAA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTTCTCCCTTCACACTGTaGATGCCCATGTCTCTCCGA +
Preference number: 3 (lower is better)
Translates to: KSGTKLTLKQTLISYFAASPFTL*MPMSLR
Trigger: TCGGAGAGACATGGGCATCAACAGTGTGAAGGGAGA...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
3UTR TCA 72 bp GTACAGACTAAATTTATCCATGATGACAGACACCAATaGCTACTAAAGAAAGTAATTGCATTGCTGTTCCAA +
Preference number: 3 (lower is better)
Translates to: VQTKFIHDDRHQ*LLKKVIALLFQ
Trigger: TTGGAACAGCAATGCAATTACTTTCTTTAGTAGTCATTGGTGTCTGTCATCATGGATAAATTTAGTCTGTAC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAGTCTCCAGAGCTCTGTaGAAAGTGACCGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: ASSSVKPTENDYASLLVRVSRAL*KVTGRG
Trigger: CCCTCTGCCGGTCACTTTCCACAGAGCTCTGGAGAC...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026199.14
CDS-3UTR GCA 90 bp CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACAGCACCTCCTCTTTCTaGATTCACAGCGGACTCCAC +
Preference number: 4 (lower is better)
Translates to: HTLQLNFASSSVKPTENDSTSSF*IHSGLH
Trigger: GTGGAGTCCGCTGTGAATGCAGAAAGAGGAGGTGCT...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTCACCCATACTGGGTGTaGTTCCTCCCTCCAGTAGAC +
Preference number: 4 (lower is better)
Translates to: SSSVKPTENDYASLLVRSHPYWV*FLPPVD
Trigger: GTCTACTGGAGGGAGGAACCACACCCAGTATGGGTG...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACGATCGGGCAGAGCAGTaGAATTCTGTAGCACCGGAA +
Preference number: 4 (lower is better)
Translates to: HTLQLNFASSSVKPTENDDRAEQ*NSVAPE
Trigger: TTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATC...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAGCTCTGTGGAAAGTaGCCGGCAGAGGGCGGCAAA +
Preference number: 4 (lower is better)
Translates to: KSGTKLTLKQTLISYFAAELCGK*PAEGGK
Trigger: TTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCTC...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026199.14
CDS-3UTR TCA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTAGGCTCTGTGGAAAGTaGCCGGCAGAGGGCGGCAAA +
Preference number: 4 (lower is better)
Translates to: KSGTKLTLKQTLISYFAARLCGK*PAEGGK
Trigger: TTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCCT...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCACACCCATACTGGGTGTaGTTCCTCCCTCCAGTAGAC +
Preference number: 4 (lower is better)
Translates to: SYKHLWPCERLELRQVLSHPYWV*FLPPVD
Trigger: GTCTACTGGAGGGAGGAACCACACCCAGTATGGGTG...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATC +
Preference number: 4 (lower is better)
Translates to: SSSVKPTENDYASLLVRSSCRIH*SGRVQI
Trigger: GATTTGAACGCGTCCTGACCAGTGGATGCGACAGCT...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCGATCGGGCAGAGCAGTaGAATTCTGTAGCACCGGAA +
Preference number: 4 (lower is better)
Translates to: YKHLWPCERLELRQVLSVDRAEQ*NSVAPE
Trigger: TTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATC...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp CGCCTCTCTTCTTGTAAGAAGTACAGACTAAATTTATCCATGATGACAGACACCAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATC +
Preference number: 4 (lower is better)
Translates to: RLSSCKKYRLNLSMMTDTSCRIH*SGRVQI
Trigger: GATTTGAACGCGTCCTGACCAGTGGATGCGACAGCT...GGTGTCTGTCATCATGGATAAATTTAGTCTGTACTTCTTACAAGAAGAGAGGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCATATCAAAGGCTCTGTaGAAAGTGACCGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: YKHLWPCERLELRQVLSVISKAL*KVTGRG
Trigger: CCCTCTGCCGGTCACTTTCCACAGAGCCTTTGATAT...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCATCGAAACTTCATTCCTaGGTCTCTGGAAGATCGGGC +
Preference number: 4 (lower is better)
Translates to: SYKHLWPCERLELRQVLSSKLHS*VSGRSG
Trigger: GCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGA...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGAGAATATTCTGAATaGGCAAGCGAAGCTCCCATT +
Preference number: 4 (lower is better)
Translates to: ASSSVKPTENDYASLLVRREYSE*ASEAPI
Trigger: AATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCT...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCTGTTATTCCACCTCCTaGCATTACCACAATCCTGCC +
Preference number: 4 (lower is better)
Translates to: YKHLWPCERLELRQVLSVCYSTS*HYHNPA
Trigger: GGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACA...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp CGCCTCTCTTCTTGTAAGAAGTACAGACTAAATTTATCCATGATGACAGACACCGCTGCCATTGGATCATaGACCATATCAAAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: RLSSCKKYRLNLSMMTDTAAIGS*TISKAL
Trigger: CAGAGCCTTTGATATGGTTCATGATCCAATGGCAGC...GGTGTCTGTCATCATGGATAAATTTAGTCTGTACTTCTTACAAGAAGAGAGGCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112047.10
CDS-3UTR GCA 90 bp ACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAACTTTGCAAGAAATCCATTTCCTaGTCCCGCCTTCCCCGACGA +
Preference number: 4 (lower is better)
Translates to: TKLTLKQTLISYFAAELCKKSIS*SRLPRR
Trigger: TCGTCGGGGAAGGCGGGAGCAGGAAATGGATTTCTT...GCAAAGTTCAGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTCGGCACCATAAAGCTTaGCAAGGCGAATGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: KSGTKLTLKQTLISYFAARHHKA*QGECQP
Trigger: AGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCG...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp CATACTTTGCAGCTGAACTTTGCCAGTTCATCAGTTAAGCCCACTGAGAATGACACAAACACTGGGATCTaGACACTCTGTTTTACTACT +
Preference number: 4 (lower is better)
Translates to: HTLQLNFASSSVKPTENDTNTGI*TLCFTT
Trigger: AGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGT...GTCATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp ACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAACTTTGCTCGAAACTTCATTCCTaGGTCTCTGGAAGATCGGGC +
Preference number: 4 (lower is better)
Translates to: TKLTLKQTLISYFAAELCSKLHS*VSGRSG
Trigger: GCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGA...GCAAAGTTCAGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTACAAACACTGGGATCTaGACACTCTGTTTTACTACT +
Preference number: 4 (lower is better)
Translates to: SSSVKPTENDYASLLVRSTNTGI*TLCFTT
Trigger: AGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGT...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR TCA 90 bp TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAAGAGAATATTCTGAATaGGCAAGCGAAGCTCCCATT +
Preference number: 4 (lower is better)
Translates to: SYKHLWPCERLELRQVLSREYSE*ASEAPI
Trigger: AATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCT...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR GCA 90 bp TCTTTTTCTTCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGTCCATCTTCAGTCAATaGCCCAAACACCAAACCATC +
Preference number: 4 (lower is better)
Translates to: SFSSYKHLWPCERLELRQSIFSQ*PKHQTI
Trigger: GATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGA...CTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGAAGAAAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCGATCATCACAAACACTaGGATCTGAACACTCTGTTT +
Preference number: 4 (lower is better)
Translates to: YKHLWPCERLELRQVLSVDHHKH*DLNTLF
Trigger: AAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATC...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATT +
Preference number: 4 (lower is better)
Translates to: YKHLWPCERLELRQVLSVILPFA*SMSCFI
Trigger: AATAAAGCAACTCATAGACCAGGCAAAAGGCAGGAT...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTTGTTATTCCACCTCCTaGCATTACCACAATCCTGCC +
Preference number: 4 (lower is better)
Translates to: KSGTKLTLKQTLISYFAACYSTS*HYHNPA
Trigger: GGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACA...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp TCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCACTCCAGAGCTGCCATTaGATCATGAACCATATCAAA +
Preference number: 4 (lower is better)
Translates to: SYKHLWPCERLELRQVLSLQSCH*IMNHIK
Trigger: TTTGATATGGTTCATGATCCAATGGCAGCTCTGGAG...TGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112047.10
CDS-3UTR GCA 90 bp ACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGAACTTTGCTCCATCTTCAGTCAATaGCCCAAACACCAAACCATC +
Preference number: 4 (lower is better)
Translates to: TKLTLKQTLISYFAAELCSIFSQ*PKHQTI
Trigger: GATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGA...GCAAAGTTCAGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTGATCATCACAAACACTaGGATCTGAACACTCTGTTT +
Preference number: 4 (lower is better)
Translates to: KSGTKLTLKQTLISYFAADHHKH*DLNTLF
Trigger: AAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATC...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CCA 90 bp AAAAGTGGCACTAAATTGACCCTGAAACAAACTCTGATTTCATACTTTGCAGCTATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATT +
Preference number: 4 (lower is better)
Translates to: KSGTKLTLKQTLISYFAAILPFA*SMSCFI
Trigger: AATAAAGCAACTCATAGACCAGGCAAAAGGCAGGAT...AGCTGCAAAGTATGAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS GCA 90 bp GGACTCCACCGAATCTACACACACTTCCATAAGAAATCCATTTCCTaGTCCCGCCTTCCCCGACGATATCCACGCCTGTTTCCGCTCGCA +
Preference number: 5 (lower is better)
Translates to: GLHRIYTHFHKKSIS*SRLPRRYPRLFPLA
Trigger: TGCGAGCGGAAACAGGCGTGGATATCGTCGGGGAAGGCGGGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS CCA 90 bp GCTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATCCTAAGGTTAGGAGGGTCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: ALLEAVLPVLSCRIH*SGRVQILRLGGSPE
Trigger: CTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS TCA 90 bp TTCCACCTCCTGGCATTACCACAATCCTGCCTTTTGCCTGGTCTATaGGTTGCTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTGTCGC +
Preference number: 5 (lower is better)
Translates to: FHLLALPQSCLLPGL*VALLEAVLPVLSCR
Trigger: GCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS GCA 90 bp CCTCCTGGCATTACCACAATCCTGCCTTTTGCCTGGTCTATGAGTTaGTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTGTCGCATCCA +
Preference number: 5 (lower is better)
Translates to: PPGITTILPFAWSMS*FIRGSPSSAELSHP
Trigger: TGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS TCA 90 bp AAGCGAAGCTCCCATTGCGACAGAGGAATTTCGAAACTTCATTCCTaGGTCTCTGGAAGATCGGGCAGAGCAGTGGAATTCTGTAGCACC +
Preference number: 5 (lower is better)
Translates to: KRSSHCDRGISKLHS*VSGRSGRAVEFCST
Trigger: GGTGCTACAGAATTCCACTGCTCTGCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CCA 90 bp TCTGTTATTCCACCTCCTGGCATTACCACAATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATTAGAGGCAGTCCTTCCAGTGCTGAG +
Preference number: 5 (lower is better)
Translates to: SVIPPPGITTILPFA*SMSCFIRGSPSSAE
Trigger: CTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CCA 90 bp TTTCGAAACTTCATTCCTGAGTCTCTGGAAGATCGGGCAGAGCAGTaGAATTCTGTAGCACCGGAACCCTCAAGGATCCTTTGCAGATTT +
Preference number: 5 (lower is better)
Translates to: FRNFIPESLEDRAEQ*NSVAPEPSRILCRF
Trigger: AAATCTGCAAAGGATCCTTGAGGGTTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATCTTCCAGAGACTCAGGAATGAAGTTTCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS GCA 90 bp GCAGAGCAGTGGAATTCTGTAGCACCGGAACCCTCAAGGATCCTTTaGAGATTTTTATCTGTTATTCCACCTCCTGGCATTACCACAATC +
Preference number: 5 (lower is better)
Translates to: AEQWNSVAPEPSRIL*RFLSVIPPPGITTI
Trigger: GATTGTGGTAATGCCAGGAGGTGGAATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGTTCCGGTGCTACAGAATTCCACTGCTCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS-3UTR CAA 90 bp GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAGACAAGCATAGCTCTTaGTCAATGTGTCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: ASSSVKPTENDYASLLVRDKHSS*SMCPSS
Trigger: TGAAGATGGACACATTGACAAAGAGCTATGCTTGTC...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CAA 90 bp GCCAGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAAACTAGGACGTCCTTaGCAATTGCATTCAAAGTCC +
Preference number: 5 (lower is better)
Translates to: ASSSVKPTENDYASLLVRKLGRP*QLHSKS
Trigger: GGACTTTGAATGCAATTGCAAAGGACGTCCTAGTTT...TCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CAA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCTCTCCAGAGCTGCCATaGGATCATGAACCATATCAA +
Preference number: 5 (lower is better)
Translates to: YKHLWPCERLELRQVLSVSPELP*DHEPYQ
Trigger: TTGATATGGTTCATGATCCAATGGCAGCTCTGGAGA...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112047.10
CDS-3UTR CAA 90 bp TCTTTTTCTTCTTACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGACAAGCATAGCTCTTaGTCAATGTGTCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: SFSSYKHLWPCERLELRQDKHSS*SMCPSS
Trigger: TGAAGATGGACACATTGACAAAGAGCTATGCTTGTC...CTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGAAGAAAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CAA 90 bp AGTTCATCAGTTAAGCCCACTGAGAATGACTACGCCTCTCTTCTTGTAAGAAGTACCCTCAAGGATCCTTaGCAGATTTTTATCTGTTAT +
Preference number: 5 (lower is better)
Translates to: SSSVKPTENDYASLLVRSTLKDP*QIFICY
Trigger: ATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGT...ACTTCTTACAAGAAGAGAGGCGTAGTCATTCTCAGTGGGCTTAACTGATGAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS-3UTR CAA 90 bp TACAAACATCTATGGCCATGTGAAAGGTTAGAGCTTCGTCAGGTATTGTCAGTCACCCTCAAGGATCCTTaGCAGATTTTTATCTGTTAT +
Preference number: 5 (lower is better)
Translates to: YKHLWPCERLELRQVLSVTLKDP*QIFICY
Trigger: ATAACAGATAAAAATCTGCAAAGGATCCTTGAGGGT...GACTGACAATACCTGACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
CDS CCA 72 bp GAGGCAGTCCTTCCAGTGCTGAGCTGTCGCATCCACTaGTCAGGACGCGTTCAAATCCTAAGGTTAGGAGGG +
Preference number: 6 (lower is better)
Translates to: EAVLPVLSCRIH*SGRVQILRLGG
Trigger: CCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS TCA 72 bp CTAAGGTTAGGAGGGTCTCCAGAGCTCTGTGGAAAGTaGCCGGCAGAGGGCGGCAAAGAGCTACAAGAGACA +
Preference number: 6 (lower is better)
Translates to: LRLGGSPELCGK*PAEGGKELQET
Trigger: TGTCTCTTGTAGCTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAGCTCTGGAGACCCTCCTAACCTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026199.14
CDS GCA 72 bp AGAGCACAGTTCAATCCGACCAGCACCTCCTCTTTCTaGATTCACAGCGGACTCCACCGAATCTACACACAC +
Preference number: 6 (lower is better)
Translates to: RAQFNPTSTSSF*IHSGLHRIYTH
Trigger: GTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAGGTGCTGGTCGGATTGAACTGTGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CCA 72 bp ATGCCCCAAACACCAAACCATCGGCACCATAAAGCTTaGCAAGGCGAATGTCAGCCTTCATCACCTCAACTT +
Preference number: 6 (lower is better)
Translates to: MPQTPNHRHHKA*QGECQPSSPQL
Trigger: AAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CCA 72 bp CCACCTCCTGGCATTACCACAATCCTGCCTTTTGCCTaGTCTATGAGTTGCTTTATTAGAGGCAGTCCTTCC +
Preference number: 6 (lower is better)
Translates to: PPPGITTILPFA*SMSCFIRGSPS
Trigger: GGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS TCA 72 bp CTGGCATTACCACAATCCTGCCTTTTGCCTGGTCTATaGGTTGCTTTATTAGAGGCAGTCCTTCCAGTGCTG +
Preference number: 6 (lower is better)
Translates to: LALPQSCLLPGL*VALLEAVLPVL
Trigger: CAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS GCA 72 bp ATTACCACAATCCTGCCTTTTGCCTGGTCTATGAGTTaGTTTATTAGAGGCAGTCCTTCCAGTGCTGAGCTG +
Preference number: 6 (lower is better)
Translates to: ITTILPFAWSMS*FIRGSPSSAEL
Trigger: CAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CAA 72 bp CAAATCCTAAGGTTAGGAGGGTCTCCAGAGCTGCCATaGGATCATGAACCATATCAAAGGCTCTGTGGAAAG +
Preference number: 6 (lower is better)
Translates to: QILRLGGSPELP*DHEPYQRLCGK
Trigger: CTTTCCACAGAGCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CAA 90 bp CTGTTACCTTTAGAGAATATTCTGAATGAGCAAGCGAAGCTCCCATaGCGACAGAGGAATTTCGAAACTTCATTCCTGAGTCTCTGGAAG +
Preference number: 6 (lower is better)
Translates to: LLPLENILNEQAKLP*RQRNFETSFLSLWK
Trigger: CTTCCAGAGACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCTAAAGGTAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2
CDS CAA 72 bp TTAGAGAATATTCTGAATGAGCAAGCGAAGCTCCCATaGCGACAGAGGAATTTCGAAACTTCATTCCTGAGT +
Preference number: 6 (lower is better)
Translates to: LENILNEQAKLP*RQRNFETSFLS
Trigger: ACTCAGGAATGAAGTTTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026199.14
ENSMUST00000112047.10
ENSMUST00000153295.2