Pregenerated sensors for CUTAL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026870Ensembl transcript IDs: ENSMUST00000028228.6, ENSMUST00000047447.13, ENSMUST00000113068.9, ENSMUST00000184164.8
Found 122 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACTTCATaGGCACAGGGACAGTGCAGGGTAGGGTCACCCATCTGCCACACA | + |
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Preference number: 1 (lower is better) Translates to: PPTQERGFSKVEGTS*AQGQCRVGSPICHT Trigger: TGTGTGGCAGATGGGTGACCCTACCCTGCACTGTCCCTGTGCTCATGAAGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR GCA 90 bp | CCTCCCCTCAGTCTCTCATCCTTACCCACGTACCCTCAGGCCACCTaGAAACACACGAAACCGGTTCCACTTGGTTCTTGGAGGCCTGAT | + |
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Preference number: 1 (lower is better) Translates to: PPLSLSSLPTYPQAT*KHTKPVPLGSWRPD Trigger: ATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCAGGTGGCCTGAGGGTACGTGGGTAAGGATGAGAGACTGAGGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CCA 90 bp | TGGGCTCAGCATCCCCCATCCTTCCCTCTTCTCTTCAGAGATGCCTaGGACCAGCGTAGAAGATACTGGTGTAGCTTACACCTCAGCATG | + |
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Preference number: 1 (lower is better) Translates to: WAQHPPSFPLLFRDA*DQRRRYWCSLHLSM Trigger: CATGCTGAGGTGTAAGCTACACCAGTATCTTCTACGCTGGTCCCAGGCATCTCTGAAGAGAAGAGGGAAGGATGGGGGATGCTGAGCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CCA 90 bp | GGGCCTCAAGCTACAGTGCTGATCAGGTTTTCAGAGGTATGCCCTTaGACCATCTGGTATTTGGGGACATCAAGGTGGGAGACACACAGC | + |
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Preference number: 1 (lower is better) Translates to: GPQATVLIRFSEVCP*TIWYLGTSRWETHS Trigger: GCTGTGTGTCTCCCACCTTGATGTCCCCAAATACCAGATGGTCCAAGGGCATACCTCTGAAAACCTGATCAGCACTGTAGCTTGAGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CCA 90 bp | GTGCAGGGTAGGGTCACCCATCTGCCACACAGGGGACACTTGAGGTaGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTG | + |
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Preference number: 1 (lower is better) Translates to: VQGRVTHLPHRGHLR*EWKGQRSERKTYKL Trigger: CAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCTACCCTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR TCA 90 bp | ATCCCAACTCTAACCACCCGTGGGCTGCCCACTGGAGTTAGCTTGTaGGATTCAGGAATGGGGTTTGTTTCACCTCTGCATTTTCACAGC | + |
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Preference number: 1 (lower is better) Translates to: IPTLTTRGLPTGVSL*DSGMGFVSPLHFHS Trigger: GCTGTGAAAATGCAGAGGTGAAACAAACCCCATTCCTGAATCTCACAAGCTAACTCCAGTGGGCAGCCCACGGGTGGTTAGAGTTGGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR TCA 90 bp | TTCTTAAGCCTTGGGCAAGAGATCAACAAGATTCAGACAGGCCTCTaGCCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACT | + |
|
Preference number: 1 (lower is better) Translates to: FLSLGQEINKIQTGL*PPTQERGFSKVEGT Trigger: AGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR GCA 90 bp | ACCTGTCTGCTGTTAGGAACATTCAATGGGAGGCAGAAGGAGGCCTaGTTTTTCCCAGAACACAGTCAACAAAGGCTAGAGGCAGAAGCC | + |
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Preference number: 1 (lower is better) Translates to: TCLLLGTFNGRQKEA*FFPEHSQQRLEAEA Trigger: GGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTCTGGGAAAAAGCAGGCCTCCTTCTGCCTCCCATTGAATGTTCCTAACAGCAGACAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR CCA 90 bp | GGTAGGGTCACCCATCTGCCACACAGGGGACACTTGAGGTGGGAATaGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGGACTTT | + |
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Preference number: 1 (lower is better) Translates to: GRVTHLPHRGHLRWE*KGQRSERKTYKLDF Trigger: AAAGTCCAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR CCA 90 bp | TGCAAACACACGAAACCGGTTCCACTTGGTTCTTGGAGGCCTGATTaGCTTTCACTTCCAGCCTTGACATTCTCAGCCCTTCATTCAGCA | + |
|
Preference number: 1 (lower is better) Translates to: CKHTKPVPLGSWRPD*LSLPALTFSALHSA Trigger: TGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR TCA 90 bp | CAGTGGAATTCTCTAGTCCTTTGGAAGGGCCTCAAGCTACAGTGCTaGTCAGGTTTTCAGAGGTATGCCCTTGGACCATCTGGTATTTGG | + |
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Preference number: 1 (lower is better) Translates to: QWNSLVLWKGLKLQC*SGFQRYALGPSGIW Trigger: CCAAATACCAGATGGTCCAAGGGCATACCTCTGAAAACCTGATCAGCACTGTAGCTTGAGGCCCTTCCAAAGGACTAGAGAATTCCACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR TCA 90 bp | ACTTCTGACAGTTTCACTTGGAGCGTGGATGATGGTCACATTCCTTaGGAAGTTCAGGGGTTCCTCTGTCAACCTCAGAAGCTCTGTCTA | + |
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Preference number: 1 (lower is better) Translates to: TSDSFTWSVDDGHIP*EVQGFLCQPQKLCL Trigger: TAGACAGAGCTTCTGAGGTTGACAGAGGAACCCCTGAACTTCTCAAGGAATGTGACCATCATCCACGCTCCAAGTGAAACTGTCAGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CCA 90 bp | ATCCTTGAAACTGAAATGTCAACTTGGGAAGTAATTCTTAAGCCTTaGGCAAGAGATCAACAAGATTCAGACAGGCCTCTGACCTCCGAC | + |
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Preference number: 1 (lower is better) Translates to: ILETEMSTWEVILKP*ARDQQDSDRPLTSD Trigger: GTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGTTTCAAGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR CCA 90 bp | TCCAAAACAAACAAACAAACAAACAAACAAACAAACAAACCACACTaGCCAGCAGGTTCCCAGGGCTCAGAACCTACATCTCCAGGATAT | + |
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Preference number: 1 (lower is better) Translates to: SKTNKQTNKQTNKPH*PAGSQGSEPTSPGY Trigger: ATATCCTGGAGATGTAGGTTCTGAGCCCTGGGAACCTGCTGGCCAGTGTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | GTGCAGGGTAGGGTCACCCATCTGCCACACAGGGGACACTTGAGGTGGGAATGGCCCATGAGTCTGTGTTaGAGCCCTAATATCCCCCTA | + |
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Preference number: 2 (lower is better) Translates to: VQGRVTHLPHRGHLRWEWPMSLC*SPNIPL Trigger: TAGGGGGATATTAGGGCTTCAACACAGACTCATGGG...CCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCTACCCTGCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CAA 90 bp | GGGACAGTGCAGGGTAGGGTCACCCATCTGCCACACAGGGGACACTaGAGGTGGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTAT | + |
|
Preference number: 2 (lower is better) Translates to: GTVQGRVTHLPHRGH*RWEWKGQRSERKTY Trigger: ATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCTACCCTGCACTGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACTTCTGGTTCTTGGAGGCCTaGTTGGCTTTCACTTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: RPLTSDPGERLFKGRGDFWFLEA*LAFTSS Trigger: GCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCA...GAAGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | GGCAAGAGATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGCACACAGGGGACACTTaGGGTGGGAATGGAAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: GKRSTRFRQASDLRPRREHTGDT*GGNGKD Trigger: GTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTG...CTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTGGGCAAGAGATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGATGGTTCTTGGAGGCCTaGTTGGCTTTCACTTCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: PWARDQQDSDRPLTSDPGWFLEA*LAFTSS Trigger: GCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCA...TCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCCCAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR GCA 90 bp | AGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACTTCAGGCAGAAGGAGGCCTaGTTTTTCCCAGAACACAGT | + |
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Preference number: 2 (lower is better) Translates to: RPLTSDPGERLFKGRGDFRQKEA*FFPEHS Trigger: ACTGTGTTCTGGGAAAAAGCAGGCCTCCTTCTGCCT...GAAGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR CAA 90 bp | GTGGGCTGCCCACTGGAGTTAGCTTGTGAGATTCAGGAATGGGGTTaGTTTCACCTCTGCATTTTCACAGCTTTGGGCTCAGCATCCCCC | + |
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Preference number: 2 (lower is better) Translates to: VGCPLELACEIQEWG*FHLCIFTALGSASP Trigger: GGGGGATGCTGAGCCCAAAGCTGTGAAAATGCAGAGGTGAAACAAACCCCATTCCTGAATCTCACAAGCTAACTCCAGTGGGCAGCCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | AGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACTTCACTGGAGTTAGCTTGTaGGATTCAGGAATGGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: RPLTSDPGERLFKGRGDFTGVSL*DSGMGF Trigger: AAACCCCATTCCTGAATCTCACAAGCTAACTCCAGT...GAAGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR GCA 90 bp | GATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCAGGCAGAAGGAGGCCTaGTTTTTCCCAGAACACAGT | + |
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Preference number: 2 (lower is better) Translates to: DQQDSDRPLTSDPGERLFRQKEA*FFPEHS Trigger: ACTGTGTTCTGGGAAAAAGCAGGCCTCCTTCTGCCT...GAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR-3UTR CCA 90 bp | GATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCCTCCTCAGCCACCAGTaGAATTATTCTCAGCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: DQQDSDRPLTSDPGERLFLLSHQ*NYSQPF Trigger: GAAGGGCTGAGAATAATTCCACTGGTGGCTGAGGAG...GAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184164.8 |
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| 3UTR-3UTR GCA 90 bp | GGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGGACTTTCTCCCCTCACCGTCACTGCTaGCTCCCCTCAGTCTCTCAT | + |
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Preference number: 2 (lower is better) Translates to: GNGKDSVLKGRPINWTFSPHRHC*LPSVSH Trigger: ATGAGAGACTGAGGGGAGGCAGCAGTGACGGTGAGG...GGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR CCA 90 bp | CCTTCCCTCTTCTCTTCAGAGATGCCTGGGACCAGCGTAGAAGATACTGGTGTATCTTGGAGGCCTGATTaGCTTTCACTTCCAGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: PSLFSSEMPGTSVEDTGVSWRPD*LSLPAL Trigger: CAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGA...TACACCAGTATCTTCTACGCTGGTCCCAGGCATCTCTGAAGAGAAGAGGGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CAA 90 bp | GTTCCACTTGGTTCTTGGAGGCCTGATTGGCTTTCACTTCCAGCCTaGACATTCTCAGCCCTTCATTCAGCATGCACAGGTCAGCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: VPLGSWRPDWLSLPA*TFSALHSACTGQLE Trigger: TTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | CCATCCTTCCCTCTTCTCTTCAGAGATGCCTGGGACCAGCGTAGAAGATACTGGCACCTCAGCATGGTATaGAAAACCTTGGATAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: PSFPLLFRDAWDQRRRYWHLSMV*KTLDSL Trigger: CAGACTATCCAAGGTTTTTCATACCATGCTGAGGTG...CCAGTATCTTCTACGCTGGTCCCAGGCATCTCTGAAGAGAAGAGGGAAGGATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | CCACTGGAGTTAGCTTGTGAGATTCAGGAATGGGGTTTGTTTCACCTCTGCATTCCCATGAGTCTGTGTTaGAGCCCTAATATCCCCCTA | + |
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Preference number: 2 (lower is better) Translates to: PLELACEIQEWGLFHLCIPMSLC*SPNIPL Trigger: TAGGGGGATATTAGGGCTTCAACACAGACTCATGGG...AATGCAGAGGTGAAACAAACCCCATTCCTGAATCTCACAAGCTAACTCCAGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | CACTTGAGGTGGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGGATGGTCACATTCCTTaGGAAGTTCAGGGGTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: HLRWEWKGQRSERKTYKLDGHIP*EVQGFL Trigger: GAGGAACCCCTGAACTTCTCAAGGAATGTGACCATC...CAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR CAA 90 bp | CAAGGTGGGAGACACACAGCAATTAGAACTAGAATGTGGTTCTATTaGTCTTATGTGAACCCACCCCTCCCACTGCCATTGAAGAGACCA | + |
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Preference number: 2 (lower is better) Translates to: QGGRHTAIRTRMWFY*SYVNPPLPLPLKRP Trigger: TGGTCTCTTCAATGGCAGTGGGAGGGGTGGGTTCACATAAGACAAATAGAACCACATTCTAGTTCTAATTGCTGTGTGTCTCCCACCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | CTGACAGTTTCACTTGGAGCGTGGATGATGGTCACATTCCTTGAGAAGTTCAGGTTTCACTTCCAGCCTTaGCATTCTCAGCCCTTCATT | + |
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Preference number: 2 (lower is better) Translates to: LTVSLGAWMMVTFLEKFRFHFQP*HSQPFI Trigger: AATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAA...CCTGAACTTCTCAAGGAATGTGACCATCATCCACGCTCCAAGTGAAACTGTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR CCA 90 bp | ACTTGGGAAGTAATTCTTAAGCCTTGGGCAAGAGATCAACAAGATTCAGACAGGAGGGGACACTTGAGGTaGGAATGGAAAGGACAGCGT | + |
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Preference number: 2 (lower is better) Translates to: TWEVILKPWARDQQDSDRRGHLR*EWKGQR Trigger: ACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCT...CCTGTCTGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCCTCAGCCACCAGCCTTaGCATTCTCAGCCCTTCATT | + |
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Preference number: 2 (lower is better) Translates to: SERKTYKLDFLQKATWSILSHQP*HSQPFI Trigger: AATGAAGGGCTGAGAATGTCAAGGCTGGTGGCTGAG...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047447.13 |
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| 3UTR-3UTR CCA 90 bp | ACTTGGGAAGTAATTCTTAAGCCTTGGGCAAGAGATCAACAAGATTCAGACAGGTCTTGGAGGCCTGATTaGCTTTCACTTCCAGCCTTG | + |
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Preference number: 2 (lower is better) Translates to: TWEVILKPWARDQQDSDRSWRPD*LSLPAL Trigger: CAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGA...CCTGTCTGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR GCA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCGCCCTTCATTCAGCATaGACAGGTCAGCTAGAACCT | + |
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Preference number: 2 (lower is better) Translates to: SERKTYKLDFLQKATWSIALHSA*TGQLEP Trigger: AGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGC...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGACCATCTGGTATTTGGGGACATCAAGGTGGGAGACACACAGCAATTAGAAGTCTGTGATTCAATATaGCCCCCTTCTGAAATTCCA | + |
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Preference number: 2 (lower is better) Translates to: LDHLVFGDIKVGDTQQLEVCDSI*PPSEIP Trigger: TGGAATTTCAGAAGGGGGCCATATTGAATCACAGAC...TTCTAATTGCTGTGTGTCTCCCACCTTGATGTCCCCAAATACCAGATGGTCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | CCACTGGAGTTAGCTTGTGAGATTCAGGAATGGGGTTTGTTTCACCTCTGCATTCCTTCTGAAATTCCATaGAATGCACTGCTTTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: PLELACEIQEWGLFHLCIPSEIP*NALLCD Trigger: ATCACAAAGCAGTGCATTTCATGGAATTTCAGAAGG...AATGCAGAGGTGAAACAAACCCCATTCCTGAATCTCACAAGCTAACTCCAGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR CCA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCAAGCGAGCATCTCCTTaGTCCATGGGAATACTGAAG | + |
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Preference number: 2 (lower is better) Translates to: SERKTYKLDFLQKATWSIKRASP*SMGILK Trigger: CTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTT...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028228.6 |
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| 3UTR-3UTR TCA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCCTCAAGCTACAGTGCTaGTCAGGTTTTCAGAGGTAT | + |
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Preference number: 2 (lower is better) Translates to: SERKTYKLDFLQKATWSILKLQC*SGFQRY Trigger: ATACCTCTGAAAACCTGATCAGCACTGTAGCTTGAG...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | AGTAGGGTTTTCAAGACTTGTGTATACTTCAGAAACTGGTATTTTAAGACCAGACACTTGGAGCGTGGATaGTGGTCACATTCCTTGAGA | + |
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Preference number: 2 (lower is better) Translates to: SRVFKTCVYFRNWYFKTRHLERG*WSHSLR Trigger: TCTCAAGGAATGTGACCATCATCCACGCTCCAAGTG...TCTGGTCTTAAAATACCAGTTTCTGAAGTATACACAAGTCTTGAAAACCCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | ATGTCAACTTGGGAAGTAATTCTTAAGCCTTGGGCAAGAGATCAACAAGATTCACACCTCAGCATGGTATaGAAAACCTTGGATAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: MSTWEVILKPWARDQQDSHLSMV*KTLDSL Trigger: CAGACTATCCAAGGTTTTTCATACCATGCTGAGGTG...TGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| 3UTR-3UTR TCA 90 bp | ACTTGTGTATACTTCAGAAACTGGTATTTTAAGACCAGAAATCTCCACTCCTCAACTGGAGTTAGCTTGTaGGATTCAGGAATGGGGTTT | + |
|
Preference number: 2 (lower is better) Translates to: TCVYFRNWYFKTRNLHSSTGVSL*DSGMGF Trigger: AAACCCCATTCCTGAATCTCACAAGCTAACTCCAGT...TGAGGAGTGGAGATTTCTGGTCTTAAAATACCAGTTTCTGAAGTATACACAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR-3UTR CCA 90 bp | ATCCTTGAAACTGAAATGTCAACTTGGGAAGTAATTCTTAAGCCTTGGGCAAGAGGAAGACCTATAAACTaGACTTTCTCCAAAAAGCAA | + |
|
Preference number: 2 (lower is better) Translates to: ILETEMSTWEVILKPWARGRPIN*TFSKKQ Trigger: TTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCC...TCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGTTTCAAGGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR GCA 72 bp | CCAGAGCCTGAAGACGAGAAACCTCACCGTCACTGCTaGCTCCCCTCAGTCTCTCATCCTTACCCACGTACC | + |
|
Preference number: 3 (lower is better) Translates to: PEPEDEKPHRHC*LPSVSHPYPRT Trigger: GGTACGTGGGTAAGGATGAGAGACTGAGGGGAGGCAGCAGTGACGGTGAGGTTTCTCGTCTTCAGGCTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR GCA 72 bp | AGCCCAGAGCCTGAAGACGAGAAACCTCACCGTCACTaGTGCCTCCCCTCAGTCTCTCATCCTTACCCACGT | + |
|
Preference number: 3 (lower is better) Translates to: SPEPEDEKPHRH*CLPSVSHPYPR Trigger: ACGTGGGTAAGGATGAGAGACTGAGGGGAGGCAGCAGTGACGGTGAGGTTTCTCGTCTTCAGGCTCTGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR-3UTR CAA 90 bp | AGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACTTCCCCCTCCCACTGCCATaGAAGAGACCAGGACACTAT | + |
|
Preference number: 3 (lower is better) Translates to: RPLTSDPGERLFKGRGDFPLPLP*KRPGHY Trigger: ATAGTGTCCTGGTCTCTTCAATGGCAGTGGGAGGGG...GAAGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR-3UTR CAA 90 bp | GGCAAGAGATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGCCACACAGGGGACACTaGAGGTGGGAATGGAAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: GKRSTRFRQASDLRPRREPHRGH*RWEWKG Trigger: TCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGG...CTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR TCA 72 bp | CAGGAGAGAGGCTTTTCAAAGGTAGAGGGGACTTCATaGGCACAGGGACAGTGCAGGGTAGGGTCACCCATC | + |
|
Preference number: 3 (lower is better) Translates to: QERGFSKVEGTS*AQGQCRVGSPI Trigger: GATGGGTGACCCTACCCTGCACTGTCCCTGTGCTCATGAAGTCCCCTCTACCTTTGAAAAGCCTCTCTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR CCA 72 bp | AGGGTCACCCATCTGCCACACAGGGGACACTTGAGGTaGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACC | + |
|
Preference number: 3 (lower is better) Translates to: RVTHLPHRGHLR*EWKGQRSERKT Trigger: GGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR-3UTR CAA 90 bp | GTGCAGGGTAGGGTCACCCATCTGCCACACAGGGGACACTTGAGGTGGGAATGGAGAATGTGGTTCTATTaGTCTTATGTGAACCCACCC | + |
|
Preference number: 3 (lower is better) Translates to: VQGRVTHLPHRGHLRWEWRMWFY*SYVNPP Trigger: GGGTGGGTTCACATAAGACAAATAGAACCACATTCT...CCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCTACCCTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR TCA 72 bp | CTAACCACCCGTGGGCTGCCCACTGGAGTTAGCTTGTaGGATTCAGGAATGGGGTTTGTTTCACCTCTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: LTTRGLPTGVSL*DSGMGFVSPLH Trigger: ATGCAGAGGTGAAACAAACCCCATTCCTGAATCTCACAAGCTAACTCCAGTGGGCAGCCCACGGGTGGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | CATCCCCCATCCTTCCCTCTTCTCTTCAGAGATGCCTaGGACCAGCGTAGAAGATACTGGTGTAGCTTACAC | + |
|
Preference number: 3 (lower is better) Translates to: HPPSFPLLFRDA*DQRRRYWCSLH Trigger: GTGTAAGCTACACCAGTATCTTCTACGCTGGTCCCAGGCATCTCTGAAGAGAAGAGGGAAGGATGGGGGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR TCA 72 bp | GTTCTTGGAGGCCTGATTGGCTTTCACTTCCAGCCTTaGCATTCTCAGCCCTTCATTCAGCATGCACAGGTC | + |
|
Preference number: 3 (lower is better) Translates to: VLGGLIGFHFQP*HSQPFIQHAQV Trigger: GACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR TCA 72 bp | ACACACGAAACCGGTTCCACTTGGTTCTTGGAGGCCTaGTTGGCTTTCACTTCCAGCCTTGACATTCTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: THETGSTWFLEA*LAFTSSLDILS Trigger: GCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR TCA 72 bp | CTTGGGCAAGAGATCAACAAGATTCAGACAGGCCTCTaGCCTCCGACCCAGGAGAGAGGCTTTTCAAAGGTA | + |
|
Preference number: 3 (lower is better) Translates to: LGQEINKIQTGL*PPTQERGFSKV Trigger: TACCTTTGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR CCA 72 bp | ACCTGCAAACACACGAAACCGGTTCCACTTGGTTCTTaGAGGCCTGATTGGCTTTCACTTCCAGCCTTGACA | + |
|
Preference number: 3 (lower is better) Translates to: TCKHTKPVPLGS*RPDWLSLPALT Trigger: TGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | CTGATCAGGTTTTCAGAGGTATGCCCTTGGACCATCTaGTATTTGGGGACATCAAGGTGGGAGACACACAGC | + |
|
Preference number: 3 (lower is better) Translates to: LIRFSEVCPWTI*YLGTSRWETHS Trigger: GCTGTGTGTCTCCCACCTTGATGTCCCCAAATACCAGATGGTCCAAGGGCATACCTCTGAAAACCTGATCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR TCA 72 bp | TCTCTAGTCCTTTGGAAGGGCCTCAAGCTACAGTGCTaGTCAGGTTTTCAGAGGTATGCCCTTGGACCATCT | + |
|
Preference number: 3 (lower is better) Translates to: SLVLWKGLKLQC*SGFQRYALGPS Trigger: AGATGGTCCAAGGGCATACCTCTGAAAACCTGATCAGCACTGTAGCTTGAGGCCCTTCCAAAGGACTAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR GCA 72 bp | CCTCAAGCTACAGTGCTGATCAGGTTTTCAGAGGTATaGCCTTGGACCATCTGGTATTTGGGGACATCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: PQATVLIRFSEV*PWTIWYLGTSR Trigger: CCTTGATGTCCCCAAATACCAGATGGTCCAAGGGCATACCTCTGAAAACCTGATCAGCACTGTAGCTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | ACCCATCTGCCACACAGGGGACACTTGAGGTGGGAATaGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAA | + |
|
Preference number: 3 (lower is better) Translates to: THLPHRGHLRWE*KGQRSERKTYK Trigger: TTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR TCA 72 bp | AGTTTCACTTGGAGCGTGGATGATGGTCACATTCCTTaGGAAGTTCAGGGGTTCCTCTGTCAACCTCAGAAG | + |
|
Preference number: 3 (lower is better) Translates to: SFTWSVDDGHIP*EVQGFLCQPQK Trigger: CTTCTGAGGTTGACAGAGGAACCCCTGAACTTCTCAAGGAATGTGACCATCATCCACGCTCCAAGTGAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | GGTTTTCAGAGGTATGCCCTTGGACCATCTGGTATTTaGGGACATCAAGGTGGGAGACACACAGCAATTAGA | + |
|
Preference number: 3 (lower is better) Translates to: GFQRYALGPSGI*GHQGGRHTAIR Trigger: TCTAATTGCTGTGTGTCTCCCACCTTGATGTCCCCAAATACCAGATGGTCCAAGGGCATACCTCTGAAAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR-3UTR CAA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCCCCCTCCCACTGCCATaGAAGAGACCAGGACACTAT | + |
|
Preference number: 3 (lower is better) Translates to: SERKTYKLDFLQKATWSIPLPLP*KRPGHY Trigger: ATAGTGTCCTGGTCTCTTCAATGGCAGTGGGAGGGG...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR GCA 72 bp | CCAGAACACAGTCAACAAAGGCTAGAGGCAGAAGCCTaGACAATAAGGTTCTCTCTCCTTAGTTCTCCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: PEHSQQRLEAEA*TIRFSLLSSPS Trigger: TGAAGGAGAACTAAGGAGAGAGAACCTTATTGTGCAGGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028228.6 |
||
| 3UTR-3UTR CAA 90 bp | GGCTGCCCACTGGAGTTAGCTTGTGAGATTCAGGAATGGGGTTTGTTTCACCTCGGACTGTTCATTGTTTaGAATAGAGCCCATATCAAT | + |
|
Preference number: 3 (lower is better) Translates to: GCPLELACEIQEWGLFHLGLFIV*NRAHIN Trigger: ATTGATATGGGCTCTATTCAAAACAATGAACAGTCC...GAGGTGAAACAAACCCCATTCCTGAATCTCACAAGCTAACTCCAGTGGGCAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | GGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTaGACTTTCTCCAAAAAGCAACATGGTCCATCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: GKDSVLKGRPIN*TFSKKQHGPSG Trigger: CCCAGATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR CCA 72 bp | GGTGTAGCTTACACCTCAGCATGGTATGAAAAACCTTaGATAGTCTGTGATTCAATATGGCCCCCTTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: GVAYTSAWYEKP*IVCDSIWPPSE Trigger: TTCAGAAGGGGGCCATATTGAATCACAGACTATCCAAGGTTTTTCATACCATGCTGAGGTGTAAGCTACACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR-3UTR CAA 90 bp | CATGAAATGCACTGCTTTGTGATAATGCATAAAATGGAGAGAATCACAACAGTGCGAAACCGGTTCCACTaGGTTCTTGGAGGCCTGATT | + |
|
Preference number: 3 (lower is better) Translates to: HEMHCFVIMHKMERITTVRNRFH*VLGGLI Trigger: AATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCG...CACTGTTGTGATTCTCTCCATTTTATGCATTATCACAAAGCAGTGCATTTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | ACTGAAATGTCAACTTGGGAAGTAATTCTTAAGCCTTaGGCAAGAGATCAACAAGATTCAGACAGGCCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: TEMSTWEVILKP*ARDQQDSDRPL Trigger: CAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCCAAGAATCAATTCTGTaGACCTCTAATCGTACCAGG | + |
|
Preference number: 3 (lower is better) Translates to: SERKTYKLDFLQKATWSIQESIL*TSNRTR Trigger: CCTGGTACGATTAGAGGTCAACAGAATTGATTCTTG...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CCA 72 bp | AGCGTAGAAGATACTGGTGTAGCTTACACCTCAGCATaGTATGAAAAACCTTGGATAGTCTGTGATTCAATA | + |
|
Preference number: 3 (lower is better) Translates to: SVEDTGVAYTSA*YEKPWIVCDSI Trigger: TATTGAATCACAGACTATCCAAGGTTTTTCATACCATGCTGAGGTGTAAGCTACACCAGTATCTTCTACGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR TCA 72 bp | ACCTCTGTAAGATTCAAAAGCAAGAATCAATTCTGTTaGCCTCTAATCGTACCAGGACTGTTCATTGTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: TSVRFKSKNQFC*PLIVPGLFIVL Trigger: CAAAACAATGAACAGTCCTGGTACGATTAGAGGTCAACAGAATTGATTCTTGCTTTTGAATCTTACAGAGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| CDS-3UTR TCA 90 bp | GTGCAGGGTAGGGTCACCCATCTGCCACACAGGGGACACTTGAGGTGGGAATGGAGACATAGATCCCAGTaGGGGAAGAGTGGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: VQGRVTHLPHRGHLRWEWRHRSQ*GKSGAR Trigger: TCTGGCTCCACTCTTCCCTCACTGGGATCTATGTCT...CCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATGGGTGACCCTACCCTGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR CAA 72 bp | CTCAGGCCACCTGCAAACACACGAAACCGGTTCCACTaGGTTCTTGGAGGCCTGATTGGCTTTCACTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LRPPANTRNRFH*VLGGLIGFHFQ Trigger: CTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCAGGTGGCCTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| CDS-3UTR TCA 90 bp | ACGAAACCGGTTCCACTTGGTTCTTGGAGGCCTGATTGGCTTTCACTTCCAGCCAGACATAGATCCCAGTaGGGGAAGAGTGGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TKPVPLGSWRPDWLSLPARHRSQ*GKSGAR Trigger: TCTGGCTCCACTCTTCCCTCACTGGGATCTATGTCT...GGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| CDS-3UTR CCA 90 bp | GGCAAGAGATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGTATCCAGGATGGCCCTaGCGATGTCTCTGGCAATTT | + |
|
Preference number: 4 (lower is better) Translates to: GKRSTRFRQASDLRPRREYPGWP*RCLWQF Trigger: AAATTGCCAGAGACATCGCCAGGGCCATCCTGGATA...CTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATCTCTTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| CDS-3UTR TCA 90 bp | CACTCCTCAGCCACCAGCCTTGACATTCTCAGCCCTTCATTCAGCATGCACAGGGGTCCATGGGAATACTaGAGACCTCTGGGATTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HSSATSLDILSPSFSMHRGPWEY*RPLGFQ Trigger: TTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACC...CCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGTGGCTGAGGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047447.13 |
||
| CDS-3UTR CCA 90 bp | TTGGCTTTCACTTCCAGCCTTGACATTCTCAGCCCTTCATTCAGCATGCACAGGCCAGTGAGGGAAGAGTaGAGCCAGAGGCTAAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LAFTSSLDILSPSFSMHRPVREE*SQRLKV Trigger: GACCTTTAGCCTCTGGCTCCACTCTTCCCTCACTGG...CCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CAA 72 bp | GGTTCTTGGAGGCCTGATTGGCTTTCACTTCCAGCCTaGACATTCTCAGCCCTTCATTCAGCATGCACAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GSWRPDWLSLPA*TFSALHSACTG Trigger: ACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CAA 72 bp | TCCACTCCTCAGCCACCAGTGGAATTCTCTAGTCCTTaGGAAGGGCCTCAAGCTACAGTGCTGATCAGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: STPQPPVEFSSP*EGPQATVLIRF Trigger: AAACCTGATCAGCACTGTAGCTTGAGGCCCTTCCAAAGGACTAGAGAATTCCACTGGTGGCTGAGGAGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| CDS-3UTR TCA 90 bp | GTGGAATTATTCTCAGCCCTTCATTCAGCATGCACAGGTCAGCTAGAACCTGTCAGACATAGATCCCAGTaGGGGAAGAGTGGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: VELFSALHSACTGQLEPVRHRSQ*GKSGAR Trigger: TCTGGCTCCACTCTTCCCTCACTGGGATCTATGTCT...GACAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATAATTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184164.8 |
||
| CDS-3UTR CCA 90 bp | AGAACACAGTCAACAAAGGCTAGAGGCAGAAGCCTGCACAATAAGGTTCTCTCTCCAGTGAGGGAAGAGTaGAGCCAGAGGCTAAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: RTQSTKARGRSLHNKVLSPVREE*SQRLKV Trigger: GACCTTTAGCCTCTGGCTCCACTCTTCCCTCACTGG...AGAGAGAACCTTATTGTGCAGGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| CDS-3UTR CCA 90 bp | TGGCTTTCACTTCCAGCCTTGACATTCTCAGCCCTTCATTCAGCATGCACAGGTTATCCAGGATGGCCCTaGCGATGTCTCTGGCAATTT | + |
|
Preference number: 4 (lower is better) Translates to: WLSLPALTFSALHSACTGYPGWP*RCLWQF Trigger: AAATTGCCAGAGACATCGCCAGGGCCATCCTGGATA...ACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| CDS-3UTR CCA 90 bp | GAACACAGTCAACAAAGGCTAGAGGCAGAAGCCTGCACAATAAGGTTCTCTCTCTCTTCTTATCCAGGATaGCCCTGGCGATGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: EHSQQRLEAEACTIRFSLSSYPG*PWRCLW Trigger: CCAGAGACATCGCCAGGGCCATCCTGGATAAGAAGA...GAGAGAGAACCTTATTGTGCAGGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
||
| 3UTR CAA 72 bp | TATTTGTCTTATGTGAACCCACCCCTCCCACTGCCATaGAAGAGACCAGGACACTATAGCCGTCTGTATCCC | + |
|
Preference number: 4 (lower is better) Translates to: YLSYVNPPLPLP*KRPGHYSRLYP Trigger: GGGATACAGACGGCTATAGTGTCCTGGTCTCTTCAATGGCAGTGGGAGGGGTGGGTTCACATAAGACAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
||
| 3UTR CAA 72 bp | TTAAGACCAGAAATCTCCACTCCTCAGCCACCAGCCTaGACATTCTCAGCCCTTCATTCAGCATGCACAGGT | + |
|
Preference number: 4 (lower is better) Translates to: LRPEISTPQPPA*TFSALHSACTG Trigger: ACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGTGGCTGAGGAGTGGAGATTTCTGGTCTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047447.13 |
||
| CDS-3UTR GCA 90 bp | GATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCGCAGTGAGACCTCAATaGCTTCTTCTATTTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: DQQDSDRPLTSDPGERLFAVRPQ*LLLFLL Trigger: AAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTGC...GAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | GTTCAGGGGTTCCTCTGTCAACCTCAGAAGCTCTGTCTAGCAAATCCAAAACAATCTTCTTATCCAGGATaGCCCTGGCGATGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VQGFLCQPQKLCLANPKQSSYPG*PWRCLW Trigger: CCAGAGACATCGCCAGGGCCATCCTGGATAAGAAGA...TTGTTTTGGATTTGCTAGACAGAGCTTCTGAGGTTGACAGAGGAACCCCTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 |
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| CDS-3UTR CCA 90 bp | CACTTGAGGTGGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGTCTTCTTATCCAGGATaGCCCTGGCGATGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HLRWEWKGQRSERKTYKLSSYPG*PWRCLW Trigger: CCAGAGACATCGCCAGGGCCATCCTGGATAAGAAGA...CAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | ACCACACTGGCCAGCAGGTTCCCAGGGCTCAGAACCTACATCTCCAGGATATTTACAGCCGGGAGACCTTaGAAGTCTTTGTCTTTATTA | + |
|
Preference number: 4 (lower is better) Translates to: TTLASRFPGLRTYISRIFTAGRP*KSLSLL Trigger: TAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGT...AAATATCCTGGAGATGTAGGTTCTGAGCCCTGGGAACCTGCTGGCCAGTGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113068.9 |
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| CDS-3UTR CCA 90 bp | GATCAACAAGATTCAGACAGGCCTCTGACCTCCGACCCAGGAGAGAGGCTTTTCAATACTGAAGACCTCTaGGATTTCAAAAGGATGCGC | + |
|
Preference number: 4 (lower is better) Translates to: DQQDSDRPLTSDPGERLFNTEDL*DFKRMR Trigger: GCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATT...GAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGTTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | ACATTCTCAGCCCTTCATTCAGCATGCACAGGTCAGCTAGAACCTGTCTGCTGTAAGCGAGCATCTCCTTaGTCCATGGGAATACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TFSALHSACTGQLEPVCCKRASP*SMGILK Trigger: CTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTT...ACAGCAGACAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 |
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| CDS-3UTR GCA 90 bp | CCTGCAAACACACGAAACCGGTTCCACTTGGTTCTTGGAGGCCTGATTGGCTTTGCAGTGAGACCTCAATaGCTTCTTCTATTTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: PANTRNRFHLVLGGLIGFAVRPQ*LLLFLL Trigger: AAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTGC...AAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113068.9 |
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| CDS-3UTR CCA 90 bp | GAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAACCAGTGAGGGAAGAGTaGAGCCAGAGGCTAAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: EWKGQRSERKTYKLDFLQPVREE*SQRLKV Trigger: GACCTTTAGCCTCTGGCTCCACTCTTCCCTCACTGG...TTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | GAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCTGGCCAGTGAGGGAAGAGTaGAGCCAGAGGCTAAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: ERKTYKLDFLQKATWSIWPVREE*SQRLKV Trigger: GACCTTTAGCCTCTGGCTCCACTCTTCCCTCACTGG...CCAGATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | ACTTCAGAAACTGGTATTTTAAGACCAGAAATCTCCACTCCTCAGCCACCAGTGCCCTGGCGATGTCTCTaGCAATTTGCTCATTGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TSETGILRPEISTPQPPVPWRCL*QFAHWD Trigger: GTCCCAATGAGCAAATTGCCAGAGACATCGCCAGGG...CACTGGTGGCTGAGGAGTGGAGATTTCTGGTCTTAAAATACCAGTTTCTGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028228.6 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | ACATTCAATGGGAGGCAGAAGGAGGCCTGCTTTTTCCCAGAACACAGTCAACAAAAGCGAGCATCTCCTTaGTCCATGGGAATACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TFNGRQKEACFFPEHSQQKRASP*SMGILK Trigger: CTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTT...TTGTTGACTGTGTTCTGGGAAAAAGCAGGCCTCCTTCTGCCTCCCATTGAATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | CACTTGAGGTGGGAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGAAGCGAGCATCTCCTTaGTCCATGGGAATACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: HLRWEWKGQRSERKTYKLKRASP*SMGILK Trigger: CTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTT...CAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTCCCACCTCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | GAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAATATCCAGGATGGCCCTaGCGATGTCTCTGGCAATTT | + |
|
Preference number: 4 (lower is better) Translates to: EWKGQRSERKTYKLDFLQYPGWP*RCLWQF Trigger: AAATTGCCAGAGACATCGCCAGGGCCATCCTGGATA...TTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | TCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAAAAGCAACATGGTCCATCTCTTCTTATCCAGGATaGCCCTGGCGATGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SERKTYKLDFLQKATWSISSYPG*PWRCLW Trigger: CCAGAGACATCGCCAGGGCCATCCTGGATAAGAAGA...GATGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | GACCAGAAATCTCCACTCCTCAGCCACCAGTGGAATTATTCTCAGCCCTTCATTAATACTGAAGACCTCTaGGATTTCAAAAGGATGCGC | + |
|
Preference number: 4 (lower is better) Translates to: DQKSPLLSHQWNYSQPFINTEDL*DFKRMR Trigger: GCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATT...AATGAAGGGCTGAGAATAATTCCACTGGTGGCTGAGGAGTGGAGATTTCTGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184164.8 |
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| CDS-3UTR TCA 90 bp | ATGTCAACTTGGGAAGTAATTCTTAAGCCTTGGGCAAGAGATCAACAAGATTCAAGACATAGATCCCAGTaGGGGAAGAGTGGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: MSTWEVILKPWARDQQDSRHRSQ*GKSGAR Trigger: TCTGGCTCCACTCTTCCCTCACTGGGATCTATGTCT...TGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR GCA 90 bp | AGAACACAGTCAACAAAGGCTAGAGGCAGAAGCCTGCACAATAAGGTTCTCTCTCCAGTGAGACCTCAATaGCTTCTTCTATTTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: RTQSTKARGRSLHNKVLSPVRPQ*LLLFLL Trigger: AAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTGG...AGAGAGAACCTTATTGTGCAGGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028228.6 |
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| CDS-3UTR CCA 90 bp | AAATCTCCACTCCTCAGCCACCAGTGGAATTATTCTCAGCCCTTCATTCAGCATACAGCCGGGAGACCTTaGAAGTCTTTGTCTTTATTA | + |
|
Preference number: 4 (lower is better) Translates to: KSPLLSHQWNYSQPFIQHTAGRP*KSLSLL Trigger: TAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGT...ATGCTGAATGAAGGGCTGAGAATAATTCCACTGGTGGCTGAGGAGTGGAGATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184164.8 |
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| CDS-3UTR GCA 90 bp | ACTTCAGAAACTGGTATTTTAAGACCAGAAATCTCCACTCCTCAGCCACCAGTGGCAGTGAGACCTCAATaGCTTCTTCTATTTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: TSETGILRPEISTPQPPVAVRPQ*LLLFLL Trigger: AAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTGC...CACTGGTGGCTGAGGAGTGGAGATTTCTGGTCTTAAAATACCAGTTTCTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | GAATGGAAAGGACAGCGTTCTGAAAGGAAGACCTATAAACTGGACTTTCTCCAAACAGCCGGGAGACCTTaGAAGTCTTTGTCTTTATTA | + |
|
Preference number: 4 (lower is better) Translates to: EWKGQRSERKTYKLDFLQTAGRP*KSLSLL Trigger: TAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGT...TTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCAGAACGCTGTCCTTTCCATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | ACTTGGGAAGTAATTCTTAAGCCTTGGGCAAGAGATCAACAAGATTCAGACAGGAATACTGAAGACCTCTaGGATTTCAAAAGGATGCGC | + |
|
Preference number: 4 (lower is better) Translates to: TWEVILKPWARDQQDSDRNTEDL*DFKRMR Trigger: GCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATT...CCTGTCTGAATCTTGTTGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CCA 90 bp | AGTAGGGTTTTCAAGACTTGTGTATACTTCAGAAACTGGTATTTTAAGACCAGATATCCAGGATGGCCCTaGCGATGTCTCTGGCAATTT | + |
|
Preference number: 4 (lower is better) Translates to: SRVFKTCVYFRNWYFKTRYPGWP*RCLWQF Trigger: AAATTGCCAGAGACATCGCCAGGGCCATCCTGGATA...TCTGGTCTTAAAATACCAGTTTCTGAAGTATACACAAGTCTTGAAAACCCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS TCA 90 bp | CAAGCCATCGTAAAAAGCGAGCATCTCCTTGGTCCATGGGAATACTaGAGACCTCTGGGATTTCAAAAGGATGCGCCAACCTCATATAGG | + |
|
Preference number: 5 (lower is better) Translates to: QAIVKSEHLLGPWEY*RPLGFQKDAPTSYR Trigger: CCTATATGAGGTTGGCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTTTTTACGATGGCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS CCA 90 bp | TCCTTCATTCCCTCCTCAAGCCATCGTAAAAAGCGAGCATCTCCTTaGTCCATGGGAATACTGAAGACCTCTGGGATTTCAAAAGGATGC | + |
|
Preference number: 5 (lower is better) Translates to: SFIPSSSHRKKRASP*SMGILKTSGISKGC Trigger: GCATCCTTTTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTTTTTACGATGGCTTGAGGAGGGAATGAAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS-3UTR CAA 90 bp | AGCCTTGACATTCTCAGCCCTTCATTCAGCATGCACAGGTCAGCTAGAACCTGTAGACCTTGGAAGTCTTaGTCTTTATTAGCAGTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SLDILSPSFSMHRSARTCRPWKS*SLLAVR Trigger: TCTCACTGCTAATAAAGACAAAGACTTCCAAGGTCT...ACAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 |
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| CDS-3UTR CAA 90 bp | TTATTCTCAGCCCTTCATTCAGCATGCACAGGTCAGCTAGAACCTGTCTGCTGTAGACCTTGGAAGTCTTaGTCTTTATTAGCAGTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: LFSALHSACTGQLEPVCCRPWKS*SLLAVR Trigger: TCTCACTGCTAATAAAGACAAAGACTTCCAAGGTCT...ACAGCAGACAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184164.8 |
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| CDS-3UTR CAA 90 bp | ACTTCAGAAACTGGTATTTTAAGACCAGAAATCTCCACTCCTCAGCCACCAGCCAGACCTTGGAAGTCTTaGTCTTTATTAGCAGTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: TSETGILRPEISTPQPPARPWKS*SLLAVR Trigger: TCTCACTGCTAATAAAGACAAAGACTTCCAAGGTCT...GGCTGGTGGCTGAGGAGTGGAGATTTCTGGTCTTAAAATACCAGTTTCTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047447.13 |
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| CDS GCA 90 bp | GGGAGACCTTGGAAGTCTTTGTCTTTATTAGCAGTGAGACCTCAATaGCTTCTTCTATTTCTCCTTTCCAAAAGTACAGAGAAGAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: GRPWKSLSLLAVRPQ*LLLFLLSKSTEKRS Trigger: AGACCTCTTCTCTGTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTGCTAATAAAGACAAAGACTTCCAAGGTCTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS CCA 72 bp | AGATGTTCACAGACGAAGCCATCTTCTTATCCAGGATaGCCCTGGCGATGTCTCTGGCAATTTGCTCATTGG | + |
|
Preference number: 6 (lower is better) Translates to: RCSQTKPSSYPG*PWRCLWQFAHW Trigger: CCAATGAGCAAATTGCCAGAGACATCGCCAGGGCCATCCTGGATAAGAAGATGGCTTCGTCTGTGAACATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS CCA 72 bp | CCCTCCTCAAGCCATCGTAAAAAGCGAGCATCTCCTTaGTCCATGGGAATACTGAAGACCTCTGGGATTTCA | + |
|
Preference number: 6 (lower is better) Translates to: PSSSHRKKRASP*SMGILKTSGIS Trigger: TGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTTTTTACGATGGCTTGAGGAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS TCA 72 bp | GTAAAAAGCGAGCATCTCCTTGGTCCATGGGAATACTaGAGACCTCTGGGATTTCAAAAGGATGCGCCAACC | + |
|
Preference number: 6 (lower is better) Translates to: VKSEHLLGPWEY*RPLGFQKDAPT Trigger: GGTTGGCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTTTTTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS CCA 72 bp | GCGCCAACCTCATATAGGCAAACAGCCGGGAGACCTTaGAAGTCTTTGTCTTTATTAGCAGTGAGACCTCAA | + |
|
Preference number: 6 (lower is better) Translates to: APTSYRQTAGRP*KSLSLLAVRPQ Trigger: TTGAGGTCTCACTGCTAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGTTTGCCTATATGAGGTTGGCGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS CCA 72 bp | AGCATCTCCTTGGTCCATGGGAATACTGAAGACCTCTaGGATTTCAAAAGGATGCGCCAACCTCATATAGGC | + |
|
Preference number: 6 (lower is better) Translates to: SISLVHGNTEDL*DFKRMRQPHIG Trigger: GCCTATATGAGGTTGGCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS TCA 72 bp | TGGCGATGTCTCTGGCAATTTGCTCATTGGGACAGTTaGCAAAAACGATGGAATAAGAGCCAGAGACATAGA | + |
|
Preference number: 6 (lower is better) Translates to: WRCLWQFAHWDS*QKRWNKSQRHR Trigger: TCTATGTCTCTGGCTCTTATTCCATCGTTTTTGTCAACTGTCCCAATGAGCAAATTGCCAGAGACATCGCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028228.6 ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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| CDS GCA 72 bp | TGGAAGTCTTTGTCTTTATTAGCAGTGAGACCTCAATaGCTTCTTCTATTTCTCCTTTCCAAAAGTACAGAG | + |
|
Preference number: 6 (lower is better) Translates to: WKSLSLLAVRPQ*LLLFLLSKSTE Trigger: CTCTGTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTGCTAATAAAGACAAAGACTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047447.13 ENSMUST00000113068.9 ENSMUST00000184164.8 |
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