Pregenerated sensors for CUTA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024194Ensembl transcript IDs: ENSMUST00000025027.10, ENSMUST00000114935.9, ENSMUST00000236888.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGCTCCTCATGGTAGGGCTGTGCCAGAATTTGAAACCGATTCTGTaGCCTGGTGCACCCAGTGCAGGTACGGGGGATTTCCCTGCTCCA | + |
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Preference number: 1 (lower is better) Translates to: GLLMVGLCQNLKPIL*PGAPSAGTGDFPAP Trigger: TGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGCCCTACCATGAGGAGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR CCA 90 bp | CCTCATGGTAGGGCTGTGCCAGAATTTGAAACCGATTCTGTGACCTaGTGCACCCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGC | + |
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Preference number: 1 (lower is better) Translates to: PHGRAVPEFETDSVT*CTQCRYGGFPCSTG Trigger: GCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGCCCTACCATGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR GCA 90 bp | CATGGTAGGGCTGTGCCAGAATTTGAAACCGATTCTGTGACCTGGTaGACCCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGCAGT | + |
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Preference number: 1 (lower is better) Translates to: HGRAVPEFETDSVTW*TQCRYGGFPCSTGS Trigger: ACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGCCCTACCATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR GCA 90 bp | GTGCACCCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGCAGTaGAATCACTTCGGCCACTTCATAAGGGTGCACAGATCGAACAAA | + |
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Preference number: 1 (lower is better) Translates to: VHPVQVRGISLLHRQ*NHFGHFIRVHRSNK Trigger: TTTGTTCGATCTGTGCACCCTTATGAAGTGGCCGAAGTGATTGCACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR GCA 90 bp | GCTGTGCCAGAATTTGAAACCGATTCTGTGACCTGGTGCACCCAGTaGAGGTACGGGGGATTTCCCTGCTCCACAGGCAGTGCAATCACT | + |
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Preference number: 1 (lower is better) Translates to: AVPEFETDSVTWCTQ*RYGGFPCSTGSAIT Trigger: AGTGATTGCACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR-3UTR GCA 90 bp | TCGGTCATCACATGGAAGCCAGGGGGCATTAAAACAGGAACAGGGCTCCTCATGGATTCTGTGACCTGGTaGACCCAGTGCAGGTACGGG | + |
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Preference number: 2 (lower is better) Translates to: SVITWKPGGIKTGTGLLMDSVTW*TQCRYG Trigger: CCCGTACCTGCACTGGGTGCACCAGGTCACAGAATC...CATGAGGAGCCCTGTTCCTGTTTTAATGCCCCCTGGCTTCCATGTGATGACCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR GCA 72 bp | ACCTGGTGCACCCAGTGCAGGTACGGGGGATTTCCCTaGTCCACAGGCAGTGCAATCACTTCGGCCACTTCA | + |
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Preference number: 3 (lower is better) Translates to: TWCTQCRYGGFP*STGSAITSATS Trigger: TGAAGTGGCCGAAGTGATTGCACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR GCA 72 bp | GCTGTGCCAGAATTTGAAACCGATTCTGTGACCTGGTaGACCCAGTGCAGGTACGGGGGATTTCCCTGCTCC | + |
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Preference number: 3 (lower is better) Translates to: AVPEFETDSVTW*TQCRYGGFPCS Trigger: GGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR CCA 72 bp | AGGGCTGTGCCAGAATTTGAAACCGATTCTGTGACCTaGTGCACCCAGTGCAGGTACGGGGGATTTCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: RAVPEFETDSVT*CTQCRYGGFPC Trigger: GCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR GCA 72 bp | GAATTTGAAACCGATTCTGTGACCTGGTGCACCCAGTaGAGGTACGGGGGATTTCCCTGCTCCACAGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: EFETDSVTWCTQ*RYGGFPCSTGS Trigger: ACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR TCA 72 bp | ATGGTAGGGCTGTGCCAGAATTTGAAACCGATTCTGTaGCCTGGTGCACCCAGTGCAGGTACGGGGGATTTC | + |
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Preference number: 3 (lower is better) Translates to: MVGLCQNLKPIL*PGAPSAGTGDF Trigger: GAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAAATTCTGGCACAGCCCTACCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| 3UTR-3UTR CAA 90 bp | GTCATCACATGGAAGCCAGGGGGCATTAAAACAGGAACAGGGCTCCTCATGGTAGCAGGAGAGGATTTATaGGGGGTTCGGTCATCACAT | + |
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Preference number: 3 (lower is better) Translates to: VITWKPGGIKTGTGLLMVAGEDL*GVRSSH Trigger: ATGTGATGACCGAACCCCCAATAAATCCTCTCCTGC...TACCATGAGGAGCCCTGTTCCTGTTTTAATGCCCCCTGGCTTCCATGTGATGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR CCA 90 bp | CCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGCAGTGCAATCACTTCGGCGAGGCCGGAGGGGGCTaGGACGGAGGGCTTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: PVQVRGISLLHRQCNHFGEAGGG*DGGLPE Trigger: TTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTC...GCCGAAGTGATTGCACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR CCA 90 bp | AGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCGAGGCCGGAGGGGGCTaGGACGGAGGGCTTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: RSRRGFIGGSVITWKPGGEAGGG*DGGLPE Trigger: TTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTC...GCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CCA 90 bp | CAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGGAGGCCGGAGGGGGCTaGGACGGAGGGCTTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: QEQERIYWGFGHHMEARGEAGGG*DGGLPE Trigger: TTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTC...CCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTG 62% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | GTGACCTGGTGCACCCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGCAGTGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCAC | + |
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Preference number: 4 (lower is better) Translates to: VTWCTQCRYGGFPCSTGSEVDAG*QTLLYH Trigger: GTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTC...ACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | CAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGACCTGGTGCACCCAGTaGAGGTACGGGGGATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: QEQERIYWGFGHHMEARGTWCTQ*RYGGFP Trigger: GGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGT...CCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR TCA 90 bp | TCTGTGACCTGGTGCACCCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGCTTTCGTTGGGACAAGTaGCAAAGGCTGCAGAGACTG | + |
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Preference number: 4 (lower is better) Translates to: SVTWCTQCRYGGFPCSTGFRWDK*QRLQRL Trigger: CAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAA...GCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGTCACAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | AGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCAC | + |
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Preference number: 4 (lower is better) Translates to: RSRRGFIGGSVITWKPGGEVDAG*QTLLYH Trigger: GTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTC...GCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | GGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCAGATTCTGTGACCTGGTaGACCCAGTGCAGGTACGGG | + |
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Preference number: 4 (lower is better) Translates to: GAGEDLLGVRSSHGSQGADSVTW*TQCRYG Trigger: CCCGTACCTGCACTGGGTGCACCAGGTCACAGAATC...TGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR GCA 90 bp | CAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGGATTCTGTGACCTGGTaGACCCAGTGCAGGTACGGG | + |
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Preference number: 4 (lower is better) Translates to: QEQERIYWGFGHHMEARGDSVTW*TQCRYG Trigger: CCCGTACCTGCACTGGGTGCACCAGGTCACAGAATC...CCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR TCA 90 bp | CAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGAAAGGCTGCAGAGACTaGTCCTGGAACGTAGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: QEQERIYWGFGHHMEARGKGCRD*SWNVAG Trigger: TCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTT...CCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | CAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCTGCTCCACAGGCAGTaGAATCACTTCGGCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: QEQERIYWGFGHHMEARGLLHRQ*NHFGHF Trigger: GAAGTGGCCGAAGTGATTGCACTGCCTGTGGAGCAG...CCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR GCA 90 bp | GGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCACTGCTCCACAGGCAGTaGAATCACTTCGGCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: GAGEDLLGVRSSHGSQGALLHRQ*NHFGHF Trigger: GAAGTGGCCGAAGTGATTGCACTGCCTGTGGAGCAG...TGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR GCA 90 bp | AGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTACCTGGTGCACCCAGTaGAGGTACGGGGGATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: SRRGFIGGSVITWKPGGITWCTQ*RYGGFP Trigger: GGGAAATCCCCCGTACCTGCACTGGGTGCACCAGGT...AATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR CCA 90 bp | GGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCACCCTGGCGATCTCCTTaGCGACTTTTTCGTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: GAGEDLLGVRSSHGSQGAPWRSP*RLFRWD Trigger: GTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGG...TGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CCA 90 bp | AGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCTCTCTACCACTGCCCTaGCGATCTCCTTGGCGACTT | + |
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Preference number: 4 (lower is better) Translates to: RSRRGFIGGSVITWKPGGSLPLP*RSPWRL Trigger: AAGTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGA...GCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR TCA 90 bp | CAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGTTGAAACCGATTCTGTaGCCTGGTGCACCCAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: QEQERIYWGFGHHMEARGLKPIL*PGAPSA Trigger: TGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAA...CCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR CCA 90 bp | TCAGGAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGCCCTGGCGATCTCCTTaGCGACTTTTTCGTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SGAGEDLLGVRSSHGSQGPWRSP*RLFRWD Trigger: GTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGG...CCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTCCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025027.10 |
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| CDS-3UTR TCA 90 bp | GCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTAAAAGGCTGCAGAGACTaGTCCTGGAACGTAGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: AGEDLLGVRSSHGSQGALKGCRD*SWNVAG Trigger: TCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTT...TAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CCA 90 bp | GCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTATCTCTACCACTGCCCTaGCGATCTCCTTGGCGACTT | + |
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Preference number: 4 (lower is better) Translates to: AGEDLLGVRSSHGSQGALSLPLP*RSPWRL Trigger: AAGTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGA...TAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR TCA 90 bp | GTGCACAGATCGAACAAACTCTGTCAGAGCAGGGACCAGGGAGCTTTGGGTTTTAAAGGCTGCAGAGACTaGTCCTGGAACGTAGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: VHRSNKLCQSRDQGALGFKGCRD*SWNVAG Trigger: TCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTT...AAAACCCAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTTCGATCTGTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR TCA 90 bp | GCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTATTGAAACCGATTCTGTaGCCTGGTGCACCCAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: AGEDLLGVRSSHGSQGALLKPIL*PGAPSA Trigger: TGCACTGGGTGCACCAGGTCACAGAATCGGTTTCAA...TAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS-3UTR TCA 90 bp | CCAGTGCAGGTACGGGGGATTTCCCTGCTCCACAGGCAGTGCAATCACTTCGGCCTTTCCATTCATAGCTaGAGAGGTCAGAGAAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PVQVRGISLLHRQCNHFGLSIHS*RGQRKK Trigger: CTTCTTTCTCTGACCTCTTCAGCTATGAATGGAAAG...GCCGAAGTGATTGCACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | GGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTAAAAGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCAC | + |
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Preference number: 4 (lower is better) Translates to: GEDLLGVRSSHGSQGALKEVDAG*QTLLYH Trigger: GTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTC...TTTTAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CCA 90 bp | GTGCACAGATCGAACAAACTCTGTCAGAGCAGGGACCAGGGAGCTTTGGGTTTTTCTCTACCACTGCCCTaGCGATCTCCTTGGCGACTT | + |
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Preference number: 4 (lower is better) Translates to: VHRSNKLCQSRDQGALGFSLPLP*RSPWRL Trigger: AAGTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGA...AAAACCCAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTTCGATCTGTGCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR GCA 90 bp | ATAAGGGTGCACAGATCGAACAAACTCTGTCAGAGCAGGGACCAGGGAGCTTTGAGTATGGATGTGATCTaGGGGATGAGGTTGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: IRVHRSNKLCQSRDQGALSMDVI*GMRLTQ Trigger: CTGCGTCAACCTCATCCCGCAGATCACATCCATACT...CAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTTCGATCTGTGCACCCTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR TCA 90 bp | GGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTAAAATTTCGTTGGGACAAGTaGCAAAGGCTGCAGAGACTG | + |
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Preference number: 4 (lower is better) Translates to: GEDLLGVRSSHGSQGALKFRWDK*QRLQRL Trigger: CAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAA...TTTTAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS TCA 90 bp | CCACTGCCCTGGCGATCTCCTTGGCGACTTTTTCGTTGGGACAAGTaGCAAAGGCTGCAGAGACTGATCCTGGAACGTAGCCGGAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: PLPWRSPWRLFRWDK*QRLQRLILERSRSP Trigger: CGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGCAGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS GCA 90 bp | CCATTCATAGATGGATGTGATCTGCGGGATGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCACTGCCCTGGCGATCTCCTTGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: PFIDGCDLRDEVDAG*QTLLYHCPGDLLGD Trigger: GTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATCTATGAATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS GCA 90 bp | GGAACAAAGTATGGATGTGATCTGCGGGATGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCACTGCCCTGGCGATCTCCTTGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: GTKYGCDLRDEVDAG*QTLLYHCPGDLLGD Trigger: GTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATACTTTGTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR CAA 90 bp | AGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTATCTGCGGGATGAGGTaGACGCAGGCTGCCAGACGC | + |
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Preference number: 5 (lower is better) Translates to: SRRGFIGGSVITWKPGGIICGMR*TQAARR Trigger: GCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGAT...AATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CAA 90 bp | GAGCAGGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATGCCCTGGCGATCTCCTaGGCGACTTTTTCGTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: EQERIYWGFGHHMEARGHALAIS*ATFSLG Trigger: TCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGC...ATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCCTGCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CAA 90 bp | GCTCCACAGGCAGTGCAATCACTTCGGCCACTTCATAAGGGTGCACAGATCGAAGCCCTGGCGATCTCCTaGGCGACTTTTTCGTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: APQAVQSLRPLHKGAQIEALAIS*ATFSLG Trigger: TCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGC...TTCGATCTGTGCACCCTTATGAAGTGGCCGAAGTGATTGCACTGCCTGTGGAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS-3UTR CAA 90 bp | GGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTAAAAATCTGCGGGATGAGGTaGACGCAGGCTGCCAGACGC | + |
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Preference number: 5 (lower is better) Translates to: GEDLLGVRSSHGSQGALKICGMR*TQAARR Trigger: GCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGAT...TTTTAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS-3UTR CAA 90 bp | GGAGAGGATTTATTGGGGGTTCGGTCATCACATGGAAGCCAGGGGGCATTAAAAGCCCTGGCGATCTCCTaGGCGACTTTTTCGTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: GEDLLGVRSSHGSQGALKALAIS*ATFSLG Trigger: TCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGC...TTTTAATGCCCCCTGGCTTCCATGTGATGACCGAACCCCCAATAAATCCTCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS GCA 72 bp | GATGGATGTGATCTGCGGGATGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCACTGCCCTGGCGATCTC | + |
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Preference number: 6 (lower is better) Translates to: DGCDLRDEVDAG*QTLLYHCPGDL Trigger: GAGATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 |
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| CDS GCA 72 bp | TATGGATGTGATCTGCGGGATGAGGTTGACGCAGGCTaGCAGACGCTTCTCTACCACTGCCCTGGCGATCTC | + |
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Preference number: 6 (lower is better) Translates to: YGCDLRDEVDAG*QTLLYHCPGDL Trigger: GAGATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS CAA 72 bp | GCCAGACGCTTCTCTACCACTGCCCTGGCGATCTCCTaGGCGACTTTTTCGTTGGGACAAGTGACAAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: ARRFSTTALAIS*ATFSLGQVTKA Trigger: AGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS CAA 72 bp | AGGGAACAAAGTATGGATGTGATCTGCGGGATGAGGTaGACGCAGGCTGCCAGACGCTTCTCTACCACTGCC | + |
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Preference number: 6 (lower is better) Translates to: REQSMDVICGMR*TQAARRFSTTA Trigger: GGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATACTTTGTTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS CAA 90 bp | AGAGAAAGAAGGGAACAAAGTATGGATGTGATCTGCGGGATGAGGTaGACGCAGGCTGCCAGACGCTTCTCTACCACTGCCCTGGCGATC | + |
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Preference number: 6 (lower is better) Translates to: RERREQSMDVICGMR*TQAARRFSTTALAI Trigger: GATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCATACTTTGTTCCCTTCTTTCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236888.2 |
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| CDS CAA 72 bp | ACCACTGCCCTGGCGATCTCCTTGGCGACTTTTTCGTaGGGACAAGTGACAAAGGCTGCAGAGACTGATCCT | + |
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Preference number: 6 (lower is better) Translates to: TTALAISLATFS*GQVTKAAETDP Trigger: AGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGCAGTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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| CDS TCA 72 bp | TGGCGATCTCCTTGGCGACTTTTTCGTTGGGACAAGTaGCAAAGGCTGCAGAGACTGATCCTGGAACGTAGC | + |
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Preference number: 6 (lower is better) Translates to: WRSPWRLFRWDK*QRLQRLILERS Trigger: GCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025027.10 ENSMUST00000114935.9 ENSMUST00000236888.2 |
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