Pregenerated sensors for CUL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029686Ensembl transcript IDs: ENSMUST00000031697.9, ENSMUST00000146200.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGCTGTTAACCAGCCTGAAACCAGCTGGTaGGAACTGTGGTCTCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: GSIQTRSRVLPQTTAVNQPETSW*ELWSQL Trigger: AAGCTGAGACCACAGTTCCCACCAGCTGGTTTCAGG...CTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| 3UTR-3UTR TCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGGGAGCCAATGTATTaGTTTAAGTGCGGTAGCATG | + |
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Preference number: 2 (lower is better) Translates to: ADYTWVHSDSLSCAASDDREPMY*FKCGSM Trigger: CATGCTACCGCACTTAAATCAATACATTGGCTCCCT...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| 3UTR-3UTR CCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACTTCCATTTTATTCACTaGAACTATCTGCTTGTGGGT | + |
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Preference number: 2 (lower is better) Translates to: IADYTWVHSDSLSCAASDFHFIH*NYLLVG Trigger: ACCCACAAGCAGATAGTTCCAGTGAATAAAATGGAA...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| 3UTR GCA 72 bp | TTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTaGCTCAGACGACAGCTGTTAACCAGGGAGCCAATG | + |
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Preference number: 3 (lower is better) Translates to: LHVGPFRLALVC*LRRQLLTREPM Trigger: CATTGGCTCCCTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| 3UTR GCA 72 bp | AGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTaGTGCCTCAGACGACAGCTGTTAACCAGGGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: RLHVGPFRLALV*CLRRQLLTREP Trigger: TGGCTCCCTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACCCGGGACCCGAGGTTTaGACCTGGAGGAGAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDPGPEV*TWRRAE Trigger: CTCAGCTCTCCTCCAGGTTCAAACCTCGGGTCCCGG...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGCTGTTAACCAGTCCAAGCCAACAAACTaGGCTCCCCCAGGAGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: GSIQTRSRVLPQTTAVNQSKPTN*APPGVC Trigger: GCAGACTCCTGGGGGAGCTCAGTTTGTTGGCTTGGA...CTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACACGGCAAGGCAAACGTaGAAGACTGCTGAAAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDTARQT*KTAERA Trigger: GGCCCTTTCAGCAGTCTTGCACGTTTGCCTTGCCGT...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACGCTGAATTCCAGCTCTaGGGTCATCCCAGATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDAEFQL*GHPRSG Trigger: ACCAGATCTGGGATGACCTCAGAGCTGGAATTCAGC...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACCTGGTATACACCTGCTaGATTCCAGCTCTGAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDLVYTC*IPALRS Trigger: TGACCTCAGAGCTGGAATTCAGCAGGTGTATACCAG...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGCTGTTAACCAGAGCAGGATTGCCATCTaGAATGTGGACGCCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: GSIQTRSRVLPQTTAVNQSRIAI*NVDACK Trigger: TTTGCAGGCGTCCACATTTCAGATGGCAATCCTGCT...CTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACCTCACGATGGCCGCCTaGATCAGTAGTTTGCGGTCT | + |
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Preference number: 4 (lower is better) Translates to: IADYTWVHSDSLSCAASDLTMAA*ISSLRS Trigger: AGACCGCAAACTACTGATTCAGGCGGCCATCGTGAG...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGCTGTTAACCAGCCTTCCTCATTTTCATaGTTCTCACGATGGCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: GSIQTRSRVLPQTTAVNQPSSFS*FSRWPP Trigger: AGGCGGCCATCGTGAGAATCATGAAAATGAGGAAGG...CTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACTGGAGGAGAGCTGAGTaGGGACTTCACCAAGTAACT | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDWRRAE*GLHQVT Trigger: AGTTACTTGGTGAAGTCCTCACTCAGCTCTCCTCCA...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACCCAGAACTCAGGACCTaGATACTGAAGTCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: IADYTWVHSDSLSCAASDPELRT*ILKSKS Trigger: GGACTTGGACTTCAGTATTCAGGTCCTGAGTTCTGG...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACCTAGTTCATCTTGTGTaGTCTCGTGGAGGTAAACCT | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDLVHLV*SRGGKP Trigger: AGGTTTACCTCCACGAGAGCACACAAGATGAACTAG...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACCTTGGAGATCATGCTTaGTTCAGCATCGTCACTCGC | + |
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Preference number: 4 (lower is better) Translates to: IADYTWVHSDSLSCAASDLGDHA*FSIVTR Trigger: GCGAGTGACGATGCTGAAGCAAGCATGATCTCCAAG...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACACATCCAGCACTGTCTaGACATACATCTTGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: IADYTWVHSDSLSCAASDTSSTV*TYILGS Trigger: TGACCCCAAGATGTATGTGCAGACAGTGCTGGATGT...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CCA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACTTGCCATGCTTTGTCTaGTATACACCTGCTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: ADYTWVHSDSLSCAASDDLPCFV*YTPAEF Trigger: GAATTCAGCAGGTGTATACCAGACAAAGCATGGCAA...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACACTTCACCAAGTAACTaGTGGTGTTTCAGGACCTTC | + |
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Preference number: 4 (lower is better) Translates to: IADYTWVHSDSLSCAASDTSPSN*WCFRTF Trigger: GAAGGTCCTGAAACACCAGCAGTTACTTGGTGAAGT...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CCA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACTTGCCATCTGAAATGTaGACGCCTGCAAAGTGTATC | + |
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Preference number: 4 (lower is better) Translates to: IADYTWVHSDSLSCAASDLPSEM*TPAKCI Trigger: GATACACTTTGCAGGCGTCCACATTTCAGATGGCAA...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGGCTCAGGGGATTTACTaGATGACTGGGCCATTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWAQGIY*MTGPFW Trigger: CCAAAATGGCCCAGTCATCCAGTAAATCCCCTGAGC...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGAGGGGATTTACTGGATaGCTGGGCCATTTTGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWRGFTG*LGHFGN Trigger: GTTACCAAAATGGCCCAGTCATCCAGTAAATCCCCT...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGCCACCATCACTTGATTaGGGGTGTCTTCTAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWPPSLD*GCLLVL Trigger: CAGAACTAGAAGACACCCTCAATCAAGTGATGGTGG...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGGAACCCAATGTCTATTaGGGTAGGCACAGATTCCAT | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWEPNVY*GRHRFH Trigger: ATGGAATCTGTGCCTACCTCAATAGACATTGGGTTC...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR TCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGATCGTTGTTGAATGCTaGCATCACCAGGGCATTGTA | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWIVVEC*HHQGIV Trigger: TACAATGCCCTGGTGATGTCAGCATTCAACAACGAT...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGTCCACACTTCTCAATTaGTGCAAGACCCTGATTATG | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWSTLLN*CKTLIM Trigger: CATAATCAGGGTCTTGCAGCAATTGAGAAGTGTGGA...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGTTAACTTGGAGATCATaGTTGCTTCAGCATCGTCAC | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWLTWRS*LLQHRH Trigger: GTGACGATGCTGAAGCAAGCATGATCTCCAAGTTAA...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGAGAGTTCCATGTATCTaGACTTTGCCATGCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWRVPCI*TLPCFV Trigger: GACAAAGCATGGCAAAGTCCAGATACATGGAACTCT...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGGATGTACCAGTCTCTTaGCAAGCATCTTTGCATAGA | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWDVPVS*QASLHR Trigger: TCTATGCAAAGATGCTTGCCAAGAGACTGGTACATC...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR GCA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGCATGTATCTGGACTTTaGCATGCTTTGTCTGGTATA | + |
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Preference number: 4 (lower is better) Translates to: HFIHWNYLLVGHADPARWHVSGL*HALSGI Trigger: TATACCAGACAAAGCATGGCAAAGTCCAGATACATG...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | GGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGCTGTTAACCAGGCCTCTTCTGGGTTCTaGGAACTTTTCTTCAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: GSIQTRSRVLPQTTAVNQASSGF*ELFFSK Trigger: CTTGCTGAAGAAAAGTTCCAAGAACCCAGAAGAGGC...CTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | GCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACCCATGTATCTGGACTTaGCCATGCTTTGTCTGGTAT | + |
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Preference number: 5 (lower is better) Translates to: ADYTWVHSDSLSCAASDDPCIWT*PCFVWY Trigger: ATACCAGACAAAGCATGGCAAAGTCCAGATACATGG...GTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACAAGCCAGCATCGTTGTaGAATGCTGACATCACCAGG | + |
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Preference number: 5 (lower is better) Translates to: IADYTWVHSDSLSCAASDKPASL*NADITR Trigger: CCTGGTGATGTCAGCATTCAACAACGATGCTGGCTT...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | GGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACGACAGCTGTTAACCAGGATGACTGGGCCATTTaGGTAACCGCATTGTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: GSIQTRSRVLPQTTAVNQDDWAI*VTALLF Trigger: AAACAACAATGCGGTTACCAAAATGGCCCAGTCATC...CTGGTTAACAGCTGTCGTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACATATCAATGCATTTCTaGATCACCGGGACCCGAGGT | + |
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Preference number: 5 (lower is better) Translates to: IADYTWVHSDSLSCAASDISMHF*ITGTRG Trigger: ACCTCGGGTCCCGGTGATCAAGAAATGCATTGATAT...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGACTTGGAGATCATGCTaGCTTCAGCATCGTCACTCG | + |
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Preference number: 5 (lower is better) Translates to: HFIHWNYLLVGHADPARWTWRSC*LQHRHS Trigger: CGAGTGACGATGCTGAAGCAAGCATGATCTCCAAGT...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | ATAGCAGATTACACGTGGGTCCATTCAGACTCGCTCTCGTGTGCTGCCTCAGACCAATTCCACATAAGATaGTACAACTCCACTAATCAG | + |
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Preference number: 5 (lower is better) Translates to: IADYTWVHSDSLSCAASDQFHIR*YNSTNQ Trigger: CTGATTAGTGGAGTTGTACAATCTTATGTGGAATTG...GTCTGAGGCAGCACACGAGAGCGAGTCTGAATGGACCCACGTGTAATCTGCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGGTCTGCACATACATCTaGGGGTCATTTAGAGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: HFIHWNYLLVGHADPARWVCTYI*GSFRAA Trigger: AGCTGCTCTAAATGACCCCAAGATGTATGTGCAGAC...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS-3UTR CAA 90 bp | CATTTTATTCACTGGAACTATCTGCTTGTGGGTCATGCAGACCCTGCTAGATGGTTCCCCTTTGGACAGTaGATACAACCATGTCAATTT | + |
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Preference number: 5 (lower is better) Translates to: HFIHWNYLLVGHADPARWFPFGQ*IQPCQF Trigger: AAATTGACATGGTTGTATCAACTGTCCAAAGGGGAA...CCATCTAGCAGGGTCTGCATGACCCACAAGCAGATAGTTCCAGTGAATAAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031697.9 |
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| CDS GCA 72 bp | GATAACTGCGCTCCAACTCTGACGGCAAGGCAAACGTaGAAGACTGCTGAAAGGGCCACGATCCAGAACTCA | + |
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Preference number: 6 (lower is better) Translates to: DNCAPTLTARQT*KTAERATIQNS Trigger: TGAGTTCTGGATCGTGGCCCTTTCAGCAGTCTTGCACGTTTGCCTTGCCGTCAGAGTTGGAGCGCAGTTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031697.9 ENSMUST00000146200.8 |
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| CDS TCA 72 bp | GAAAGGGCCACGATCCAGAACTCAGGACCTGAATACTaGAGTCCAAGTCCAGCGGTTCTGAATTCGTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ERATIQNSGPEY*SPSPAVLNSSG Trigger: ACCTGACGAATTCAGAACCGCTGGACTTGGACTTCAGTATTCAGGTCCTGAGTTCTGGATCGTGGCCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031697.9 ENSMUST00000146200.8 |
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| CDS CAA 72 bp | GATCATGCTTGCTTCAGCATCGTCACTCGCACTGTTTaGATGTACCAGTCTCTTGGCAAGCATCTTTGCATA | + |
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Preference number: 6 (lower is better) Translates to: DHACFSIVTRTV*MYQSLGKHLCI Trigger: TATGCAAAGATGCTTGCCAAGAGACTGGTACATCAAAACAGTGCGAGTGACGATGCTGAAGCAAGCATGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031697.9 ENSMUST00000146200.8 |
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