Pregenerated sensors for CTXN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069372Ensembl transcript IDs: ENSMUST00000091892.4, ENSMUST00000209786.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAACAACATTCATTGAGTAGACATAAATGCTTGCACCTTCCTACTTaGGCTCTAGTAATAGAAACTTTCCATTATCCTCAAATAAGACAC | + |
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Preference number: 1 (lower is better) Translates to: QQHSLSRHKCLHLPT*ALVIETFHYPQIRH Trigger: GTGTCTTATTTGAGGATAATGGAAAGTTTCTATTACTAGAGCCCAAGTAGGAAGGTGCAAGCATTTATGTCTACTCAATGAATGTTGTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 90 bp | CACTGCTTCCTGGAGCCCCCTGCTTTGCAAGAAATAAGTAGCCCCTaGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATA | + |
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Preference number: 2 (lower is better) Translates to: HCFLEPPALQEISSP*MSSLHRLPHPAQDI Trigger: TATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAGGGGCTACTTATTTCTTGCAAAGCAGGGGGCTCCAGGAAGCAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGCAGTAGACATAAATGCTTaGACCTTCCTACTTGGGCTC | + |
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Preference number: 2 (lower is better) Translates to: LDVVSTQASSPCPGHKCAVDINA*TFLLGL Trigger: GAGCCCAAGTAGGAAGGTGCAAGCATTTATGTCTAC...TGCACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGGCTTGTTGGTGCGCTTaGTTTTACAATATCTTCAAC | + |
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Preference number: 2 (lower is better) Translates to: PLMSSLHRLPHPAQDINVACWCA*FYNIFN Trigger: GTTGAAGATATTGTAAAACCAAGCGCACCAACAAGC...CACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGAGAGACATGACTTGTACTCAGACTCATACCCGATCTTCTCTAATTACTCAGGAAGATTTGCTCCTTaGGAGGGCAGCCTACTGTGT | + |
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Preference number: 2 (lower is better) Translates to: IERHDLYSDSYPIFSNYSGRFAP*EGSLLC Trigger: ACACAGTAGGCTGCCCTCCCAAGGAGCAAATCTTCC...TGAGTAATTAGAGAAGATCGGGTATGAGTCTGAGTACAAGTCATGTCTCTCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CCA 90 bp | GACATGACTTGTACTCAGACTCATACCCGATCTTCTCTAATTACTCATTACTTGGGAAGATTTGCTCCTTaGGAGGGCAGCCTACTGTGT | + |
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Preference number: 2 (lower is better) Translates to: DMTCTQTHTRSSLITHYLGRFAP*EGSLLC Trigger: ACACAGTAGGCTGCCCTCCCAAGGAGCAAATCTTCC...CAAGTAATGAGTAATTAGAGAAGATCGGGTATGAGTCTGAGTACAAGTCATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 90 bp | GTGCTTCATTTGACAGCGACATCTTCGCAAGTGTTGGTGCGCTTGTaGGTGCGCTTGGTTTTACAATATCTTCAACAACATTCATTGAGT | + |
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Preference number: 2 (lower is better) Translates to: VLHLTATSSQVLVRL*VRLVLQYLQQHSLS Trigger: ACTCAATGAATGTTGTTGAAGATATTGTAAAACCAAGCGCACCAACAAGCGCACCAACACTTGCGAAGATGTCGCTGTCAAATGAAGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 90 bp | TTGACAGCGACATCTTCGCAAGTGTTGGTGCGCTTGTTGGTGCGCTaGGTTTTACAATATCTTCAACAACATTCATTGAGTAGACATAAA | + |
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Preference number: 2 (lower is better) Translates to: LTATSSQVLVRLLVR*VLQYLQQHSLSRHK Trigger: TTTATGTCTACTCAATGAATGTTGTTGAAGATATTGTAAAACCAAGCGCACCAACAAGCGCACCAACACTTGCGAAGATGTCGCTGTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CCA 90 bp | GGTAACTATGTGCACATAAAAATGCATACTCCTCTTAAAGCCAAAGTCTTTTTGGCTTGTTGGTGCGCTTaGTTTTACAATATCTTCAAC | + |
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Preference number: 2 (lower is better) Translates to: GNYVHIKMHTPLKAKVFLACWCA*FYNIFN Trigger: GTTGAAGATATTGTAAAACCAAGCGCACCAACAAGC...CAAAAAGACTTTGGCTTTAAGAGGAGTATGCATTTTTATGTGCACATAGTTACC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 90 bp | GACATAAATGTGCACAAAGCACAAAGTAAAATTGAGAGACATGACTaGTACTCAGACTCATACCCGATCTTCTCTAATTACTCATTACTT | + |
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Preference number: 2 (lower is better) Translates to: DINVHKAQSKIERHD*YSDSYPIFSNYSLL Trigger: AAGTAATGAGTAATTAGAGAAGATCGGGTATGAGTCTGAGTACAAGTCATGTCTCTCAATTTTACTTTGTGCTTTGTGCACATTTATGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGATTGAGAGACATGACTaGTACTCAGACTCATACCCG | + |
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Preference number: 3 (lower is better) Translates to: PLMSSLHRLPHPAQDINVIERHD*YSDSYP Trigger: CGGGTATGAGTCTGAGTACAAGTCATGTCTCTCAAT...CACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CAA 90 bp | CCTACTTGGGCTCTAGTAATAGAAACTTTCCATTATCCTCAAATAAGACACCTTAGGAAGATTTGCTCCTaGGGAGGGCAGCCTACTGTG | + |
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Preference number: 3 (lower is better) Translates to: PTWALVIETFHYPQIRHLRKICS*GGQPTV Trigger: CACAGTAGGCTGCCCTCCCAAGGAGCAAATCTTCCT...AAGGTGTCTTATTTGAGGATAATGGAAAGTTTCTATTACTAGAGCCCAAGTAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR GCA 72 bp | CAGCGACATCTTCGCAAGTGTTGGTGCGCTTGTTGGTaGGCTTGGTTTTACAATATCTTCAACAACATTCAT | + |
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Preference number: 3 (lower is better) Translates to: QRHLRKCWCACW*AWFYNIFNNIH Trigger: ATGAATGTTGTTGAAGATATTGTAAAACCAAGCGCACCAACAAGCGCACCAACACTTGCGAAGATGTCGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR TCA 72 bp | CATACCCGATCTTCTCTAATTACTCATTACTTGTTCTaGGCAGAGAGTGCTTCATTTGACAGCGACATCTTC | + |
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Preference number: 3 (lower is better) Translates to: HTRSSLITHYLF*AESASFDSDIF Trigger: GAAGATGTCGCTGTCAAATGAAGCACTCTCTGCTCAGAACAAGTAATGAGTAATTAGAGAAGATCGGGTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CAA 90 bp | ATTGAGAGACATGACTTGTACTCAGACTCATACCCGATCTTCTCTAATTACTCACTTGCACCTTCCTACTaGGGCTCTAGTAATAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: IERHDLYSDSYPIFSNYSLAPSY*GSSNRN Trigger: GTTTCTATTACTAGAGCCCAAGTAGGAAGGTGCAAG...TGAGTAATTAGAGAAGATCGGGTATGAGTCTGAGTACAAGTCATGTCTCTCAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGAAGTTGTGCTTGTAACCTATAAGTTCCATCACAAATGTAAGTACAGTAGACTTGCACCTTCCTACTaGGGCTCTAGTAATAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: LEVVLVTYKFHHKCKYSRLAPSY*GSSNRN Trigger: GTTTCTATTACTAGAGCCCAAGTAGGAAGGTGCAAG...TCTACTGTACTTACATTTGTGATGGAACTTATAGGTTACAAGCACAACTTCAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CCA 72 bp | TCATTGAGTAGACATAAATGCTTGCACCTTCCTACTTaGGCTCTAGTAATAGAAACTTTCCATTATCCTCAA | + |
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Preference number: 3 (lower is better) Translates to: SLSRHKCLHLPT*ALVIETFHYPQ Trigger: TTGAGGATAATGGAAAGTTTCTATTACTAGAGCCCAAGTAGGAAGGTGCAAGCATTTATGTCTACTCAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR GCA 72 bp | CAATATCTTCAACAACATTCATTGAGTAGACATAAATaGTTGCACCTTCCTACTTGGGCTCTAGTAATAGAA | + |
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Preference number: 3 (lower is better) Translates to: QYLQQHSLSRHK*LHLPTWALVIE Trigger: TTCTATTACTAGAGCCCAAGTAGGAAGGTGCAAGCATTTATGTCTACTCAATGAATGTTGTTGAAGATATTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR TCA 90 bp | CCCTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGAAGGGGTACCAGGGGTaGAGGAACAGGCTGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PLMSSLHRLPHPAQDINVKGYQG*RNRLSS Trigger: GGAGGACAGCCTGTTCCTTCACCCCTGGTACCCCTT...CACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR TCA 90 bp | CTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGCAAAGGGGTACCAGGGGTaGAGGAACAGGCTGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LDVVSTQASSPCPGHKCAKGYQG*RNRLSS Trigger: GGAGGACAGCCTGTTCCTTCACCCCTGGTACCCCTT...TGCACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR TCA 90 bp | GCCTACCACTGCTTCCTGGAGCCCCCTGCTTTGCAAGAAATAAGTAGCCCCTTGCCCATCAGCCCATGTTaGGGTTGGCATGCTCCGATA | + |
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Preference number: 4 (lower is better) Translates to: AYHCFLEPPALQEISSPLPISPC*GWHAPI Trigger: TATCGGAGCATGCCAACCTCAACATGGGCTGATGGG...CAAGGGGCTACTTATTTCTTGCAAAGCAGGGGGCTCCAGGAAGCAGTGGTAGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 72 bp | CTGGAGCCCCCTGCTTTGCAAGAAATAAGTAGCCCCTaGATGTCGTCTCTACACAGGCTTCCTCACCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LEPPALQEISSP*MSSLHRLPHPA Trigger: GGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAGGGGCTACTTATTTCTTGCAAAGCAGGGGGCTCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR TCA 90 bp | CTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGCAGGATGCCCAAAAAGATaGACAACAGGATCACAAAAA | + |
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Preference number: 4 (lower is better) Translates to: LDVVSTQASSPCPGHKCAGCPKR*TTGSQK Trigger: TTTTTGTGATCCTGTTGTTCATCTTTTTGGGCATCC...TGCACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 72 bp | TTACTCATTACTTGTTCTGAGCAGAGAGTGCTTCATTaGACAGCGACATCTTCGCAAGTGTTGGTGCGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LLITCSEQRVLH*TATSSQVLVRL Trigger: CAAGCGCACCAACACTTGCGAAGATGTCGCTGTCAAATGAAGCACTCTCTGCTCAGAACAAGTAATGAGTAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR GCA 90 bp | CTTGAAGTTGTGCTTGTAACCTATAAGTTCCATCACAAATGTAAGTACAGTAGAAGGGCATGGTCAAACTaGCCTTTCTCCAGCCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LEVVLVTYKFHHKCKYSRRAWSN*PFSSPS Trigger: TGAAGGGCTGGAGAAAGGGCAGTTTGACCATGCCCT...TCTACTGTACTTACATTTGTGATGGAACTTATAGGTTACAAGCACAACTTCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 72 bp | ACATCTTCGCAAGTGTTGGTGCGCTTGTTGGTGCGCTaGGTTTTACAATATCTTCAACAACATTCATTGAGT | + |
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Preference number: 4 (lower is better) Translates to: TSSQVLVRLLVR*VLQYLQQHSLS Trigger: ACTCAATGAATGTTGTTGAAGATATTGTAAAACCAAGCGCACCAACAAGCGCACCAACACTTGCGAAGATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR TCA 90 bp | CCTACTTGGGCTCTAGTAATAGAAACTTTCCATTATCCTCAAATAAGACACCTTGGATGCCCAAAAAGATaGACAACAGGATCACAAAAA | + |
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Preference number: 4 (lower is better) Translates to: PTWALVIETFHYPQIRHLGCPKR*TTGSQK Trigger: TTTTTGTGATCCTGTTGTTCATCTTTTTGGGCATCC...AAGGTGTCTTATTTGAGGATAATGGAAAGTTTCTATTACTAGAGCCCAAGTAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| 3UTR CAA 72 bp | TATCTTCAACAACATTCATTGAGTAGACATAAATGCTaGCACCTTCCTACTTGGGCTCTAGTAATAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: YLQQHSLSRHKC*HLPTWALVIET Trigger: AGTTTCTATTACTAGAGCCCAAGTAGGAAGGTGCAAGCATTTATGTCTACTCAATGAATGTTGTTGAAGATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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| CDS-3UTR CAA 90 bp | CTTGATGTCGTCTCTACACAGGCTTCCTCACCCTGCCCAGGACATAAATGTGCAGCCCATCAGCCCATGTaGAGGTTGGCATGCTCCGAT | + |
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Preference number: 5 (lower is better) Translates to: LDVVSTQASSPCPGHKCAAHQPM*RLACSD Trigger: ATCGGAGCATGCCAACCTCAACATGGGCTGATGGGC...TGCACATTTATGTCCTGGGCAGGGTGAGGAAGCCTGTGTAGAGACGACATCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091892.4 ENSMUST00000209786.2 |
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