Pregenerated sensors for CTXN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074872Ensembl transcript IDs: ENSMUST00000099452.3, ENSMUST00000238377.2, ENSMUST00000238754.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGTTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCATGTCTCAATGGAACTaGGAATACCATGAATCAGAG | + |
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Preference number: 2 (lower is better) Translates to: CLLNVMNGMIFSPTAQASMSQWN*EYHESE Trigger: CTCTGATTCATGGTATTCCCAGTTCCATTGAGACAT...GCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCACATGTCTGCAAAGCCGGTCTTTTaGTCCAGAGACAGGGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: FSLQQHRQANYRCVYHMSAKPVF*SRDRED Trigger: ATCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGC...AGACATGTGATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAGCAAAGCCGGTCTTTTaGTCCAGAGACAGGGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: FIECHEWNDFLSNSTGKLAKPVF*SRDRED Trigger: ATCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGC...TAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCAGAAAATGCACAAGATaGCCACAAAGGCAAAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: WNDFLSNSTGKLITDVFIRKCTR*PQRQSR Trigger: CCGGCTTTGCCTTTGTGGGCATCTTGTGCATTTTCT...GATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCGAAGTCCCAAGAAAATaGACAAGATGCCCACAAAGG | + |
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Preference number: 4 (lower is better) Translates to: WNDFLSNSTGKLITDVFIEVPRK*TRCPQR Trigger: CCTTTGTGGGCATCTTGTGCATTTTCTTGGGACTTC...GATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR TCA 90 bp | ATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTGACACTCATCTTTGCTaGAGAATTGCCACAGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: IECHEWNDFLSNSTGKLIDTHLC*RIATVG Trigger: ACCTACTGTGGCAATTCTTCAGCAAAGATGAGTGTC...AATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCTCTTTGCTGAAGAATTaGCACAGTAGGTGCTACTCA | + |
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Preference number: 4 (lower is better) Translates to: WNDFLSNSTGKLITDVFISLLKN*HSRCYS Trigger: TGAGTAGCACCTACTGTGGCAATTCTTCAGCAAAGA...GATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TGTTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTCTTTGCTGAAGAATTaGCACAGTAGGTGCTACTCA | + |
|
Preference number: 4 (lower is better) Translates to: CLLNVMNGMIFSPTAQASSLLKN*HSRCYS Trigger: TGAGTAGCACCTACTGTGGCAATTCTTCAGCAAAGA...GCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | ATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTGAAGTCCCAAGAAAATaGACAAGATGCCCACAAAGG | + |
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Preference number: 4 (lower is better) Translates to: IECHEWNDFLSNSTGKLIEVPRK*TRCPQR Trigger: CCTTTGTGGGCATCTTGTGCATTTTCTTGGGACTTC...AATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAGAAGTCCCAAGAAAATaGACAAGATGCCCACAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: FIECHEWNDFLSNSTGKLEVPRK*TRCPQR Trigger: CCTTTGTGGGCATCTTGTGCATTTTCTTGGGACTTC...TAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CCA 90 bp | TGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCGATTCAGAGACTTCGTaGACACTCATCTTTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: WNDFLSNSTGKLITDVFIDSETS*TLIFAE Trigger: TTCAGCAAAGATGAGTGTCCACGAAGTCTCTGAATC...GATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR GCA 90 bp | TTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTATCTTTGCTGAAGAATTaGCACAGTAGGTGCTACTCA | + |
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Preference number: 4 (lower is better) Translates to: FIECHEWNDFLSNSTGKLSLLKN*HSRCYS Trigger: TGAGTAGCACCTACTGTGGCAATTCTTCAGCAAAGA...TAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CCA 90 bp | ATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAATTGATTCAGAGACTTCGTaGACACTCATCTTTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: IECHEWNDFLSNSTGKLIDSETS*TLIFAE Trigger: TTCAGCAAAGATGAGTGTCCACGAAGTCTCTGAATC...AATTAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS GCA 90 bp | CCCAAGAAAATGCACAAGATGCCCACAAAGGCAAAGCCGGTCTTTTaGTCCAGAGACAGGGAGGATTCAGAGACTTCGTGGACACTCATC | + |
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Preference number: 5 (lower is better) Translates to: PKKMHKMPTKAKPVF*SRDREDSETSWTLI Trigger: GATGAGTGTCCACGAAGTCTCTGAATCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGCCTTTGTGGGCATCTTGTGCATTTTCTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CAA 90 bp | TTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCACATGTCTGGCAAAGCCGGTCTTTaGCTCCAGAGACAGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: FSLQQHRQANYRCVYHMSGKAGL*LQRQGG Trigger: TCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGCC...AGACATGTGATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CAA 90 bp | TTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCTAGGCAAAGCCGGTCTTTaGCTCCAGAGACAGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: FIECHEWNDFLSNSTGKLGKAGL*LQRQGG Trigger: TCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGCC...TAGCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CAA 90 bp | TTTTCTCTCCAACAGCACAGGCAAGCTAATTACAGATGTGTTTATCACATGTCTCGTGGACACTCATCTTaGCTGAAGAATTGCCACAGT | + |
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Preference number: 5 (lower is better) Translates to: FSLQQHRQANYRCVYHMSRGHSS*LKNCHS Trigger: ACTGTGGCAATTCTTCAGCAAAGATGAGTGTCCACG...AGACATGTGATAAACACATCTGTAATTAGCTTGCCTGTGCTGTTGGAGAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CAA 90 bp | TGTTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCCGTGGACACTCATCTTaGCTGAAGAATTGCCACAGT | + |
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Preference number: 5 (lower is better) Translates to: CLLNVMNGMIFSPTAQASRGHSS*LKNCHS Trigger: ACTGTGGCAATTCTTCAGCAAAGATGAGTGTCCACG...GCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS-3UTR CAA 90 bp | TGTTTATTGAATGTCATGAATGGAATGATTTTCTCTCCAACAGCACAGGCAAGCGGGTCTAACAGAATCTaGAAGCATCTGATAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: CLLNVMNGMIFSPTAQASGSNRI*KHLIMR Trigger: TCTCATTATCAGATGCTTCAAGATTCTGTTAGACCC...GCTTGCCTGTGCTGTTGGAGAGAAAATCATTCCATTCATGACATTCAATAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS CAA 72 bp | AATGCACAAGATGCCCACAAAGGCAAAGCCGGTCTTTaGCTCCAGAGACAGGGAGGATTCAGAGACTTCGTG | + |
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Preference number: 6 (lower is better) Translates to: NAQDAHKGKAGL*LQRQGGFRDFV Trigger: CACGAAGTCTCTGAATCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGCCTTTGTGGGCATCTTGTGCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS CAA 90 bp | TCCCAAGAAAATGCACAAGATGCCCACAAAGGCAAAGCCGGTCTTTaGCTCCAGAGACAGGGAGGATTCAGAGACTTCGTGGACACTCAT | + |
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Preference number: 6 (lower is better) Translates to: SQENAQDAHKGKAGL*LQRQGGFRDFVDTH Trigger: ATGAGTGTCCACGAAGTCTCTGAATCCTCCCTGTCTCTGGAGCAAAAGACCGGCTTTGCCTTTGTGGGCATCTTGTGCATTTTCTTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099452.3 ENSMUST00000238377.2 ENSMUST00000238754.2 |
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| CDS CAA 72 bp | ACAGGGAGGATTCAGAGACTTCGTGGACACTCATCTTaGCTGAAGAATTGCCACAGTAGGTGCTACTCATCA | + |
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Preference number: 6 (lower is better) Translates to: TGRIQRLRGHSS*LKNCHSRCYSS Trigger: TGATGAGTAGCACCTACTGTGGCAATTCTTCAGCAAAGATGAGTGTCCACGAAGTCTCTGAATCCTCCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099452.3 |
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