Pregenerated sensors for CTXN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048644Ensembl transcript IDs: ENSMUST00000053252.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTGGGACAAAGGAAAGGCACTCTAACCTGTGCTGGGGCCGAGTCTaGGAAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTGCCA | + |
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Preference number: 1 (lower is better) Translates to: GGTKERHSNLCWGRV*EGDEPACTPAHKVP Trigger: TGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTTCCCAGACTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTTTGTCCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR TCA 90 bp | CTGAGGCAAACTGTACCGTGCATTATAGGTAGGCAGCGTCCAATGTaGGTCGAAGAAAGCCTGCCTGCCAGGGCCAGGACTCAAGGAGTG | + |
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Preference number: 1 (lower is better) Translates to: LRQTVPCIIGRQRPM*VEESLPARARTQGV Trigger: CACTCCTTGAGTCCTGGCCCTGGCAGGCAGGCTTTCTTCGACTCACATTGGACGCTGCCTACCTATAATGCACGGTACAGTTTGCCTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR GCA 90 bp | GAGTCTGGGAAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTaGCAGATATTATCAACACAAGCAGCAGCCATGGTGGGGTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: ESGKGMSLLVLPHIK*QILSTQAAAMVGFL Trigger: CAGAAACCCCACCATGGCTGCTGCTTGTGTTGATAATATCTGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTTCCCAGACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR GCA 90 bp | TGTGAGTCGAAGAAAGCCTGCCTGCCAGGGCCAGGACTCAAGGAGTaGACTGAAATTGAGGATGACCATAACAAAGAAATAAGAGATAAG | + |
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Preference number: 1 (lower is better) Translates to: CESKKACLPGPGLKE*TEIEDDHNKEIRDK Trigger: CTTATCTCTTATTTCTTTGTTATGGTCATCCTCAATTTCAGTGCACTCCTTGAGTCCTGGCCCTGGCAGGCAGGCTTTCTTCGACTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR GCA 90 bp | GACATGGGAGAGGTGGGACAAAGGAAAGGCACTCTAACCTGTGCTGGGGCCGAGCGAAGAAAGCCTGCCTaGCAGGGCCAGGACTCAAGG | + |
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Preference number: 2 (lower is better) Translates to: DMGEVGQRKGTLTCAGAERRKPA*QGQDSR Trigger: CCTTGAGTCCTGGCCCTGGCAGGCAGGCTTTCTTCG...CTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTTTGTCCCACCTCTCCCATGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR CCA 90 bp | GACATGGGAGAGGTGGGACAAAGGAAAGGCACTCTAACCTGTGCTGGGGCCGAGGGTGGGGTTCTGGCCTaGCCAGGAAGGAAGATGGGT | + |
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Preference number: 2 (lower is better) Translates to: DMGEVGQRKGTLTCAGAEGGVLA*PGRKMG Trigger: ACCCATCTTCCTTCCTGGCCAGGCCAGAACCCCACC...CTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTTTGTCCCACCTCTCCCATGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR CCA 90 bp | TGGGAAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTGCCAGATATTATCCACCAGGTGGGGTTCTaGCCTGGCCAGGAAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: WEGDEPACTPAHKVPDIIHQVGF*PGQEGR Trigger: TCTTCCTTCCTGGCCAGGCCAGAACCCCACCTGGTG...GATAATATCTGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTTCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR GCA 90 bp | AAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTGCCAGATATTATCAACAGAGTCGAAGAAAGCCTaGCTGCCAGGGCCAGGACTC | + |
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Preference number: 2 (lower is better) Translates to: KGMSLLVLPHIKCQILSTESKKA*LPGPGL Trigger: GAGTCCTGGCCCTGGCAGGCAGGCTTTCTTCGACTC...TGTTGATAATATCTGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTGCCAGATATTATCAACAGATAAAGGCACCAGGTaGGGTTCTGGCCTGGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: KGMSLLVLPHIKCQILSTDKGTR*GSGLAR Trigger: CCTGGCCAGGCCAGAACCCCACCTGGTGCCTTTATC...TGTTGATAATATCTGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR GCA 90 bp | TGGGAAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTGCCAGATATTATCCCAGGACTCAAGGAGTaGACTGAAATTGAGGATGAC | + |
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Preference number: 2 (lower is better) Translates to: WEGDEPACTPAHKVPDIIPGLKE*TEIEDD Trigger: GTCATCCTCAATTTCAGTGCACTCCTTGAGTCCTGG...GATAATATCTGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTTCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR CCA 90 bp | TCAATAATAGCTTTTATTATAATTGCCACGGTTCAGAGGCGGGGAGGTGTGAAAGGCCAGGAAGGAAGATaGGTAGCTAAGGTAGGTAAG | + |
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Preference number: 2 (lower is better) Translates to: SIIAFIIIATVQRRGGVKGQEGR*VAKVGK Trigger: CTTACCTACCTTAGCTACCCATCTTCCTTCCTGGCC...TTTCACACCTCCCCGCCTCTGAACCGTGGCAATTATAATAAAAGCTATTATTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR-3UTR GCA 90 bp | TCAATAATAGCTTTTATTATAATTGCCACGGTTCAGAGGCGGGGAGGTGTGAAACTCCCGCACATAAAGTaGCAGATATTATCAACACAA | + |
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Preference number: 2 (lower is better) Translates to: SIIAFIIIATVQRRGGVKLPHIK*QILSTQ Trigger: TTGTGTTGATAATATCTGGCACTTTATGTGCGGGAG...TTTCACACCTCCCCGCCTCTGAACCGTGGCAATTATAATAAAAGCTATTATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR GCA 72 bp | GGGAGAGGTGGGACAAAGGAAAGGCACTCTAACCTGTaGTGGGGCCGAGTCTGGGAAGGGGATGAGCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: GRGGTKERHSNL*WGRVWEGDEPA Trigger: AGCAGGCTCATCCCCTTCCCAGACTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTTTGTCCCACCTCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR CCA 72 bp | AAGGAAAGGCACTCTAACCTGTGCTGGGGCCGAGTCTaGGAAGGGGATGAGCCTGCTTGTACTCCCGCACAT | + |
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Preference number: 3 (lower is better) Translates to: KERHSNLCWGRV*EGDEPACTPAH Trigger: ATGTGCGGGAGTACAAGCAGGCTCATCCCCTTCCCAGACTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR CCA 72 bp | AGAGGTGGGACAAAGGAAAGGCACTCTAACCTGTGCTaGGGCCGAGTCTGGGAAGGGGATGAGCCTGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: RGGTKERHSNLC*GRVWEGDEPAC Trigger: ACAAGCAGGCTCATCCCCTTCCCAGACTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTTTGTCCCACCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR TCA 72 bp | ACTGTACCGTGCATTATAGGTAGGCAGCGTCCAATGTaGGTCGAAGAAAGCCTGCCTGCCAGGGCCAGGACT | + |
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Preference number: 3 (lower is better) Translates to: TVPCIIGRQRPM*VEESLPARART Trigger: AGTCCTGGCCCTGGCAGGCAGGCTTTCTTCGACTCACATTGGACGCTGCCTACCTATAATGCACGGTACAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR CCA 72 bp | CAGGAAGGAAGATGGGTAGCTAAGGTAGGTAAGGACTaGACTTCTCCGAACGCCCTCAACTTCGAGCTAGGG | + |
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Preference number: 3 (lower is better) Translates to: QEGRWVAKVGKD*TSPNALNFELG Trigger: CCCTAGCTCGAAGTTGAGGGCGTTCGGAGAAGTCCAGTCCTTACCTACCTTAGCTACCCATCTTCCTTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR CCA 72 bp | CGCATTTCCAGGAAAGAATGTAGCATGCCTGGTAGTTaGGGAAAGCTGAGGTTGGTGCGGGGTCCTTCACTC | + |
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Preference number: 3 (lower is better) Translates to: RISRKECSMPGS*GKLRLVRGPSL Trigger: GAGTGAAGGACCCCGCACCAACCTCAGCTTTCCCCAACTACCAGGCATGCTACATTCTTTCCTGGAAATGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR GCA 72 bp | AAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTaGCAGATATTATCAACACAAGCAGCAGCCATGGTG | + |
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Preference number: 3 (lower is better) Translates to: KGMSLLVLPHIK*QILSTQAAAMV Trigger: CACCATGGCTGCTGCTTGTGTTGATAATATCTGGCACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR GCA 72 bp | AAGAAAGCCTGCCTGCCAGGGCCAGGACTCAAGGAGTaGACTGAAATTGAGGATGACCATAACAAAGAAATA | + |
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Preference number: 3 (lower is better) Translates to: KKACLPGPGLKE*TEIEDDHNKEI Trigger: TATTTCTTTGTTATGGTCATCCTCAATTTCAGTGCACTCCTTGAGTCCTGGCCCTGGCAGGCAGGCTTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR GCA 90 bp | TGGGGCCGAGTCTGGGAAGGGGATGAGCCTGCTTGTACTCCCGCACATAAAGTGAGGACGAGGCGGGCATaGGGCTGTAGGGGTCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: WGRVWEGDEPACTPAHKVRTRRA*GCRGLA Trigger: TGCTAGACCCCTACAGCCGCATGCCCGCCTCGTCCT...CACTTTATGTGCGGGAGTACAAGCAGGCTCATCCCCTTCCCAGACTCGGCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR GCA 90 bp | CAGGAAGGAAGATGGGTAGCTAAGGTAGGTAAGGACTGGACTTCTCCGAACGCCCGAAGGCGAACACCGTaGGTTGCTCGACGTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: QEGRWVAKVGKDWTSPNARRRTP*VARRPG Trigger: GCCTGGACGTCGAGCAACGCACGGTGTTCGCCTTCG...GGCGTTCGGAGAAGTCCAGTCCTTACCTACCTTAGCTACCCATCTTCCTTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| 3UTR CAA 72 bp | GAATGTAGCATGCCTGGTAGTTGGGGAAAGCTGAGGTaGGTGCGGGGTCCTTCACTCACCAGGGACTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ECSMPGSWGKLR*VRGPSLTRDSV Trigger: CACTGAGTCCCTGGTGAGTGAAGGACCCCGCACCAACCTCAGCTTTCCCCAACTACCAGGCATGCTACATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR GCA 90 bp | TCAATAATAGCTTTTATTATAATTGCCACGGTTCAGAGGCGGGGAGGTGTGAAAGCGAACACCGTGCGTTaGTCGACGTCCAGGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: SIIAFIIIATVQRRGGVKANTVR*STSRPA Trigger: CGCGGGCCTGGACGTCGAGCAACGCACGGTGTTCGC...TTTCACACCTCCCCGCCTCTGAACCGTGGCAATTATAATAAAAGCTATTATTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR CCA 90 bp | TCAATAATAGCTTTTATTATAATTGCCACGGTTCAGAGGCGGGGAGGTGTGAAATCGAGCGCCTCCTTGTaGTCGGTCCAGGACGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: SIIAFIIIATVQRRGGVKSSASL*SVQDEA Trigger: CGCCTCGTCCTGGACCGACCACAAGGAGGCGCTCGA...TTTCACACCTCCCCGCCTCTGAACCGTGGCAATTATAATAAAAGCTATTATTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR GCA 90 bp | CTCAATAATAGCTTTTATTATAATTGCCACGGTTCAGAGGCGGGGAGGTGTGAAAGGGGTCTAGCAGTATaGGCACACAGCGCACCATCA | + |
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Preference number: 4 (lower is better) Translates to: LNNSFYYNCHGSEAGRCERGLAV*AHSAPS Trigger: TGATGGTGCGCTGTGTGCGCATACTGCTAGACCCCT...TTCACACCTCCCCGCCTCTGAACCGTGGCAATTATAATAAAAGCTATTATTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS GCA 90 bp | CGCGTTCGAGCGCCTCCTTGTGGTCGGTCCAGGACGAGGCGGGCATaGGGCTGTAGGGGTCTAGCAGTATGCGCACACAGCGCACCATCA | + |
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Preference number: 5 (lower is better) Translates to: RVRAPPCGRSRTRRA*GCRGLAVCAHSAPS Trigger: TGATGGTGCGCTGTGTGCGCATACTGCTAGACCCCTACAGCCGCATGCCCGCCTCGTCCTGGACCGACCACAAGGAGGCGCTCGAACGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS GCA 90 bp | CGGTCCAGGACGAGGCGGGCATGCGGCTGTAGGGGTCTAGCAGTATaGGCACACAGCGCACCATCAACAGAACCAACACCACGAGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: RSRTRRACGCRGLAV*AHSAPSTEPTPRAG Trigger: GCCTGCTCGTGGTGTTGGTTCTGTTGATGGTGCGCTGTGTGCGCATACTGCTAGACCCCTACAGCCGCATGCCCGCCTCGTCCTGGACCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR CAA 90 bp | CATGGGAGAGGTGGGACAAAGGAAAGGCACTCTAACCTGTGCTGGGGCCGAGTCCGTTCGAGCGCCTCCTaGTGGTCGGTCCAGGACGAG | + |
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Preference number: 5 (lower is better) Translates to: HGRGGTKERHSNLCWGRVRSSAS*WSVQDE Trigger: CTCGTCCTGGACCGACCACAAGGAGGCGCTCGAACG...GACTCGGCCCCAGCACAGGTTAGAGTGCCTTTCCTTTGTCCCACCTCTCCCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS-3UTR CAA 90 bp | ACTCCCGCACATAAAGTGCCAGATATTATCAACACAAGCAGCAGCCATGGTGGGGGCGAACACCGTGCGTaGCTCGACGTCCAGGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: TPAHKVPDIINTSSSHGGGEHRA*LDVQAR Trigger: GCGGGCCTGGACGTCGAGCAACGCACGGTGTTCGCC...CCCACCATGGCTGCTGCTTGTGTTGATAATATCTGGCACTTTATGTGCGGGAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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| CDS GCA 72 bp | ACGAGGCGGGCATGCGGCTGTAGGGGTCTAGCAGTATaGGCACACAGCGCACCATCAACAGAACCAACACCA | + |
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Preference number: 6 (lower is better) Translates to: TRRACGCRGLAV*AHSAPSTEPTP Trigger: TGGTGTTGGTTCTGTTGATGGTGCGCTGTGTGCGCATACTGCTAGACCCCTACAGCCGCATGCCCGCCTCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053252.9 |
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