Pregenerated sensors for CTU1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038888Ensembl transcript IDs: ENSMUST00000038332.9
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAGGGCCAGGGCTCTCTGAGCCCACAGAGGTGTGCGGGAATGCATaGGTGTTGGTCCCTTCTCTCTTAGAGCTGGTAGCTGTGCCTAGA | + |
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Preference number: 1 (lower is better) Translates to: GGPGLSEPTEVCGNA*VLVPSLLELVAVPR Trigger: TCTAGGCACAGCTACCAGCTCTAAGAGAGAAGGGACCAACACCCATGCATTCCCGCACACCTCTGTGGGCTCAGAGAGCCCTGGCCCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 90 bp | GTATCCAGGATCACCTGCCTAGGGACTGGACCGCCCACAGTGGGCTaGGCCCTTCCACATCAATCATCAATCAGAAAATGCCCCACAAGC | + |
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Preference number: 1 (lower is better) Translates to: VSRITCLGTGPPTVG*ALPHQSSIRKCPTS Trigger: GCTTGTGGGGCATTTTCTGATTGATGATTGATGTGGAAGGGCTCAGCCCACTGTGGGCGGTCCAGTCCCTAGGCAGGTGATCCTGGATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 90 bp | CACTCCATTACTGAGGGAAGTCAGCAGGAACTGAGGCAGAGGCCATaGGGGAACACTACTACTGACTGGCTTACTCAGCCTGCTTTCTTA | + |
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Preference number: 1 (lower is better) Translates to: HSITEGSQQELRQRP*GNTTTDWLTQPAFL Trigger: TAAGAAAGCAGGCTGAGTAAGCCAGTCAGTAGTAGTGTTCCCTCATGGCCTCTGCCTCAGTTCCTGCTGACTTCCCTCAGTAATGGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 90 bp | AAGTCAGCAGGAACTGAGGCAGAGGCCATGAGGGAACACTACTACTaGCTGGCTTACTCAGCCTGCTTTCTTATAGTATCCAGGATCACC | + |
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Preference number: 1 (lower is better) Translates to: KSAGTEAEAMREHYY*LAYSACFLIVSRIT Trigger: GGTGATCCTGGATACTATAAGAAAGCAGGCTGAGTAAGCCAGTCAGTAGTAGTGTTCCCTCATGGCCTCTGCCTCAGTTCCTGCTGACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 90 bp | CCAAAGACCCACAAGCTAAGAAAGTCATCAGATAGTTCCTCAGACTaGCAGAAGGGATTTCAGCTTTGCTATAACCTGTCTACCTGCAGT | + |
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Preference number: 1 (lower is better) Translates to: PKTHKLRKSSDSSSD*QKGFQLCYNLSTCS Trigger: ACTGCAGGTAGACAGGTTATAGCAAAGCTGAAATCCCTTCTGTCAGTCTGAGGAACTATCTGATGACTTTCTTAGCTTGTGGGTCTTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CCA 90 bp | GAAAACTACAAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTaGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGATAGTTCC | + |
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Preference number: 1 (lower is better) Translates to: ENYKFGSEPISSADH*LPKTHKLRKSSDSS Trigger: GGAACTATCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTTGTAGTTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CAA 90 bp | CCAGGGCTCTCTGAGCCCACAGAGGTGTGCGGGAATGCATGGGTGTaGGTCCCTTCTCTCTTAGAGCTGGTAGCTGTGCCTAGAGCGCCC | + |
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Preference number: 2 (lower is better) Translates to: PGLSEPTEVCGNAWV*VPSLLELVAVPRAP Trigger: GGGCGCTCTAGGCACAGCTACCAGCTCTAAGAGAGAAGGGACCAACACCCATGCATTCCCGCACACCTCTGTGGGCTCAGAGAGCCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR CCA 90 bp | ATCCAGGATCACCTGCCTAGGGACTGGACCGCCCACAGTGGGCTGAGCCCTTCCACAGTTGCAGGGCAGTaGGGTACAATCACTTCCCCG | + |
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Preference number: 2 (lower is better) Translates to: IQDHLPRDWTAHSGLSPSTVAGQ*GTITSP Trigger: CGGGGAAGTGATTGTACCCCACTGCCCTGCAACTGT...GGAAGGGCTCAGCCCACTGTGGGCGGTCCAGTCCCTAGGCAGGTGATCCTGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR GCA 90 bp | ACACGGGGCTCAGGTTGCAGGGCACTGGACACTTTAAATAATCTGCAGGGCTCAAGATTACTCCACAGTTaGAGGGCAGTGGGGTACAAT | + |
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Preference number: 2 (lower is better) Translates to: TRGSGCRALDTLNNLQGSRLLHS*RAVGYN Trigger: ATTGTACCCCACTGCCCTGCAACTGTGGAGTAATCT...TGAGCCCTGCAGATTATTTAAAGTGTCCAGTGCCCTGCAACCTGAGCCCCGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR GCA 90 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTGGCTTCCAAAGACCCACACACGGGGCTCAGGTTaGAGGGCACTGGACACTTTA | + |
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Preference number: 2 (lower is better) Translates to: KFGSEPISSADHWLPKTHTRGSG*RALDTL Trigger: TAAAGTGTCCAGTGCCCTGCAACCTGAGCCCCGTGT...GTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR GCA 90 bp | CAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGAAGTCCCAAGGTGCCGTaGACTGAAGGGAAATCACTT | + |
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Preference number: 2 (lower is better) Translates to: QLSRPLASKDPQAKKVIRSPKVP*TEGKSL Trigger: AAGTGATTTCCCTTCAGTGCACGGCACCTTGGGACT...TCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR GCA 90 bp | GCCAATCTTATGGAAGCATTTTCTCAGATGACCCCAGCCTGTGTAAAGTTGACATCCAGTTCCCGTAGGTaGGAGAGCTGTGCCTGGATG | + |
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Preference number: 2 (lower is better) Translates to: ANLMEAFSQMTPACVKLTSSSRR*ESCAWM Trigger: CATCCAGGCACAGCTCTCGCACCTACGGGAACTGGA...TGTCAACTTTACACAGGCTGGGGTCATCTGAGAAAATGCTTCCATAAGATTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR GCA 90 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGGGATTTCAGCTTTaGTATAACCTGTCTACCTGC | + |
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Preference number: 2 (lower is better) Translates to: KFGSEPISSADHWLPKTHKGFQL*YNLSTC Trigger: GCAGGTAGACAGGTTATAGCAAAGCTGAAATCCCTT...GTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CCA 72 bp | CAAGGTTCATGTTGCTCTACAGGGCCCATCCTTCCATaGGGTACAGGTAGGACACGGGGCTCAGGTTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: QGSCCSTGPILP*GTGRTRGSGCR Trigger: CCTGCAACCTGAGCCCCGTGTCCTACCTGTACCCCATGGAAGGATGGGCCCTGTAGAGCAACATGAACCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR CAA 90 bp | CCACAGTGGGCTGAGCCCTTCCACATCAATCATCAATCAGAAAATGCCCCACAAGACACGGGGCTCAGGTaGCAGGGCACTGGACACTTT | + |
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Preference number: 3 (lower is better) Translates to: PQWAEPFHINHQSENAPQDTGLR*QGTGHF Trigger: AAAGTGTCCAGTGCCCTGCAACCTGAGCCCCGTGTC...TTGTGGGGCATTTTCTGATTGATGATTGATGTGGAAGGGCTCAGCCCACTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 72 bp | ATCACCTGCCTAGGGACTGGACCGCCCACAGTGGGCTaGGCCCTTCCACATCAATCATCAATCAGAAAATGC | + |
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Preference number: 3 (lower is better) Translates to: ITCLGTGPPTVG*ALPHQSSIRKC Trigger: GCATTTTCTGATTGATGATTGATGTGGAAGGGCTCAGCCCACTGTGGGCGGTCCAGTCCCTAGGCAGGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 72 bp | ACTGAGGGAAGTCAGCAGGAACTGAGGCAGAGGCCATaGGGGAACACTACTACTGACTGGCTTACTCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: TEGSQQELRQRP*GNTTTDWLTQP Trigger: AGGCTGAGTAAGCCAGTCAGTAGTAGTGTTCCCTCATGGCCTCTGCCTCAGTTCCTGCTGACTTCCCTCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 72 bp | GGTCACACTCCATTACTGAGGGAAGTCAGCAGGAACTaGGGCAGAGGCCATGAGGGAACACTACTACTGACT | + |
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Preference number: 3 (lower is better) Translates to: GHTPLLREVSRN*GRGHEGTLLLT Trigger: AGTCAGTAGTAGTGTTCCCTCATGGCCTCTGCCTCAGTTCCTGCTGACTTCCCTCAGTAATGGAGTGTGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CCA 72 bp | TCACAGTGTATAGATTACTCCACAGTTGCAGGGCAGTaGGGTACAATCACTTCCCCGGACACAGGGCAATGT | + |
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Preference number: 3 (lower is better) Translates to: SQCIDYSTVAGQ*GTITSPDTGQC Trigger: ACATTGCCCTGTGTCCGGGGAAGTGATTGTACCCCACTGCCCTGCAACTGTGGAGTAATCTATACACTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGAACTTCAAGGTTCATGTaGCTCTACAGGGCCCATCCT | + |
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Preference number: 3 (lower is better) Translates to: QLSRPLASKDPQAKKVIRTSRFM*LYRAHP Trigger: AGGATGGGCCCTGTAGAGCAACATGAACCTTGAAGT...TCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 72 bp | GGAACTGAGGCAGAGGCCATGAGGGAACACTACTACTaGCTGGCTTACTCAGCCTGCTTTCTTATAGTATCC | + |
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Preference number: 3 (lower is better) Translates to: GTEAEAMREHYY*LAYSACFLIVS Trigger: GGATACTATAAGAAAGCAGGCTGAGTAAGCCAGTCAGTAGTAGTGTTCCCTCATGGCCTCTGCCTCAGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR CAA 90 bp | GTCTACCTGCAGTTCACACCGACATACTTGACCAATGTCTTGATTAATGACTTTGGGAATGCATGGGTGTaGGTCCCTTCTCTCTTAGAG | + |
|
Preference number: 3 (lower is better) Translates to: VYLQFTPTYLTNVLINDFGNAWV*VPSLLE Trigger: CTCTAAGAGAGAAGGGACCAACACCCATGCATTCCC...AAAGTCATTAATCAAGACATTGGTCAAGTATGTCGGTGTGAACTGCAGGTAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR-3UTR CAA 90 bp | CCACAGTGGGCTGAGCCCTTCCACATCAATCATCAATCAGAAAATGCCCCACAAGTGAAAACTACAAATTaGGTTCAGAACCTATCAGCT | + |
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Preference number: 3 (lower is better) Translates to: PQWAEPFHINHQSENAPQVKTTN*VQNLSA Trigger: AGCTGATAGGTTCTGAACCAAATTTGTAGTTTTCAC...TTGTGGGGCATTTTCTGATTGATGATTGATGTGGAAGGGCTCAGCCCACTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CCA 72 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTaGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCA | + |
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Preference number: 3 (lower is better) Translates to: KFGSEPISSADH*LPKTHKLRKSS Trigger: TGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR TCA 72 bp | AAAATGGCCAGCCAGGACACTAACTCAACAACCATGTaGAAACTACAAATTTGGTTCAGAACCTATCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: KMASQDTNSTTM*KLQIWFRTYQL Trigger: GAGCTGATAGGTTCTGAACCAAATTTGTAGTTTTCACATGGTTGTTGAGTTAGTGTCCTGGCTGGCCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | ATCCAGGATCACCTGCCTAGGGACTGGACCGCCCACAGTGGGCTGAGCCCTTCCCGCAGCGGGAGCAGGTaGCTGGAGGAGGGGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: IQDHLPRDWTAHSGLSPSRSGSR*LEEGAL Trigger: CAAAGCCCCCTCCTCCAGGCACCTGCTCCCGCTGCG...GGAAGGGCTCAGCCCACTGTGGGCGGTCCAGTCCCTAGGCAGGTGATCCTGGAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR TCA 90 bp | CACTCCACACGGAAACAGGTCAGTCCCAAGGTGCCGTGCACTGAAGGGAAATCATCCCAGCGCGCCGCCTaGCTGCGCACTGCCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: HSTRKQVSPKVPCTEGKSSQRAA*LRTASS Trigger: GCTGGAGGCAGTGCGCAGTCAGGCGGCGCGCTGGGA...TGATTTCCCTTCAGTGCACGGCACCTTGGGACTGACCTGTTTCCGTGTGGAGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | CACTCCACACGGAAACAGGTCAGTCCCAAGGTGCCGTGCACTGAAGGGAAATCAAGCGCGCCGCCTGACTaGGCACTGCCTCCAGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: HSTRKQVSPKVPCTEGKSSAPPD*ALPPAR Trigger: CCGCGCTGGAGGCAGTGCGCAGTCAGGCGGCGCGCT...TGATTTCCCTTCAGTGCACGGCACCTTGGGACTGACCTGTTTCCGTGTGGAGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | AAGGTTCATGTTGCTCTACAGGGCCCATCCTTCCATGGGGTACAGGTAGGACACCGGAGCCTGCGGTGCTaGGGGCCACGGCGTCCATCG | + |
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Preference number: 4 (lower is better) Translates to: KVHVALQGPSFHGVQVGHRSLRC*GPRRPS Trigger: CGATGGACGCCGTGGCCCGCAGCACCGCAGGCTCCG...GTGTCCTACCTGTACCCCATGGAAGGATGGGCCCTGTAGAGCAACATGAACCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CCA 90 bp | ATCCAGGATCACCTGCCTAGGGACTGGACCGCCCACAGTGGGCTGAGCCCTTCCTGGGTTCCCAGGCTGTaGAGGCTCAACTTGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IQDHLPRDWTAHSGLSPSWVPRL*RLNLQH Trigger: GTGCTGCAAGTTGAGCCTCCACAGCCTGGGAACCCA...GGAAGGGCTCAGCCCACTGTGGGCGGTCCAGTCCCTAGGCAGGTGATCCTGGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | CACTCCACACGGAAACAGGTCAGTCCCAAGGTGCCGTGCACTGAAGGGAAATCATCCACCGCCACCAGGTaGAGGGTGATGCCCAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: HSTRKQVSPKVPCTEGKSSTATR*RVMPRR Trigger: CCGCCTGGGCATCACCCTGCACCTGGTGGCGGTGGA...TGATTTCCCTTCAGTGCACGGCACCTTGGGACTGACCTGTTTCCGTGTGGAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | GTGCGGGAATGCATGGGTGTTGGTCCCTTCTCTCTTAGAGCTGGTAGCTGTGCCGCAGGTGCAGGGTCCTaGTGGGGCCACAGGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: VRECMGVGPFSLRAGSCAAGAGS*WGHRVT Trigger: AGTGACCCTGTGGCCCCAGCAGGACCCTGCACCTGC...GGCACAGCTACCAGCTCTAAGAGAGAAGGGACCAACACCCATGCATTCCCGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CCA 90 bp | CACTCCACACGGAAACAGGTCAGTCCCAAGGTGCCGTGCACTGAAGGGAAATCAGCGGGAGCAGGTGCCTaGAGGAGGGGGCTTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HSTRKQVSPKVPCTEGKSAGAGA*RRGLCC Trigger: GCAGCAAAGCCCCCTCCTCCAGGCACCTGCTCCCGC...TGATTTCCCTTCAGTGCACGGCACCTTGGGACTGACCTGTTTCCGTGTGGAGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | AATAATCTGCAGGGCTCAAGCGACTCTGCAGGGTACAGCCACTCCACACGGAAAGCACCCCGCAGAAGGTaGAGCAGGAGCGACTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: NNLQGSSDSAGYSHSTRKAPRRR*SRSDCG Trigger: GCCGCAGTCGCTCCTGCTGCACCTTCTGCGGGGTGC...TTTCCGTGTGGAGTGGCTGTACCCTGCAGAGTCGCTTGAGCCCTGCAGATTATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CCA 90 bp | CCACACGGAAACAGGTCAGTCCCAAGGTGCCGTGCACTGAAGGGAAATCACTTCAGGAGGGCACAGGCCTaGCAGAGCTTGTGGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: PHGNRSVPRCRALKGNHFRRAQA*QSLWLA Trigger: GGCCAGCCACAAGCTCTGCCAGGCCTGTGCCCTCCT...GAAGTGATTTCCCTTCAGTGCACGGCACCTTGGGACTGACCTGTTTCCGTGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR TCA 90 bp | CCACAGTGGGCTGAGCCCTTCCACATCAATCATCAATCAGAAAATGCCCCACAACGTAGGCCACGATGGTaGGCGGCAGCTCCCAGCGCG | + |
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Preference number: 4 (lower is better) Translates to: PQWAEPFHINHQSENAPQRRPRW*AAAPSA Trigger: CGCGCTGGGAGCTGCCGCTCACCATCGTGGCCTACG...TTGTGGGGCATTTTCTGATTGATGATTGATGTGGAAGGGCTCAGCCCACTGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | CAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGATGCAGCAGGAGCGACTaGGGCCGGAGCCTGCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: QLSRPLASKDPQAKKVIRCSRSD*GRSLRC Trigger: GCACCGCAGGCTCCGGCCGCAGTCGCTCCTGCTGCA...TCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | GTGCGGGAATGCATGGGTGTTGGTCCCTTCTCTCTTAGAGCTGGTAGCTGTGCCCGGAGATGGCGGAAGTaGGCATACAGCACCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: VRECMGVGPFSLRAGSCARRWRK*AYSTTS Trigger: GGAGGTGGTGCTGTATGCGCACTTCCGCCATCTCCG...GGCACAGCTACCAGCTCTAAGAGAGAAGGGACCAACACCCATGCATTCCCGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | GTGCGGGAATGCATGGGTGTTGGTCCCTTCTCTCTTAGAGCTGGTAGCTGTGCCTGTGGAGGCTCAACTTaGAGCACACGGCGGCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VRECMGVGPFSLRAGSCACGGST*STRRPL Trigger: CAAGGGCCGCCGTGTGCTGCAAGTTGAGCCTCCACA...GGCACAGCTACCAGCTCTAAGAGAGAAGGGACCAACACCCATGCATTCCCGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR TCA 90 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTGGCTTCCAAAGACCCACCCACCAGGTGCAGGGTaGTGCCCAGGCGGGGCGCAA | + |
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Preference number: 4 (lower is better) Translates to: KFGSEPISSADHWLPKTHPPGAG*CPGGAQ Trigger: TTGCGCCCCGCCTGGGCATCACCCTGCACCTGGTGG...GTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR TCA 90 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAGCAGGTCCCGGGCATaGCCACGGAAGGCCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: KFGSEPISSADHWLPKTHSRSRA*PRKASG Trigger: CCCTGAGGCCTTCCGTGGTCATGCCCGGGACCTGCT...GTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CAA 72 bp | TCTGAGCCCACAGAGGTGTGCGGGAATGCATGGGTGTaGGTCCCTTCTCTCTTAGAGCTGGTAGCTGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SEPTEVCGNAWV*VPSLLELVAVP Trigger: AGGCACAGCTACCAGCTCTAAGAGAGAAGGGACCAACACCCATGCATTCCCGCACACCTCTGTGGGCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR TCA 90 bp | CCACACGGAAACAGGTCAGTCCCAAGGTGCCGTGCACTGAAGGGAAATCACTTCCACGCAGGAAGTTCATaGGCACCGTCTCAGCCATGT | + |
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Preference number: 4 (lower is better) Translates to: PHGNRSVPRCRALKGNHFHAGSS*APSQPC Trigger: ACATGGCTGAGACGGTGCTCATGAACTTCCTGCGTG...GAAGTGATTTCCCTTCAGTGCACGGCACCTTGGGACTGACCTGTTTCCGTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | AATAATCTGCAGGGCTCAAGCGACTCTGCAGGGTACAGCCACTCCACACGGAAAAGCACCACCTCCTTCTaGGAGGCAAACTGCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: NNLQGSSDSAGYSHSTRKSTTSF*EANCRG Trigger: GCCTCTGCAGTTTGCCTCGCAGAAGGAGGTGGTGCT...TTTCCGTGTGGAGTGGCTGTACCCTGCAGAGTCGCTTGAGCCCTGCAGATTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | AAGGTTCATGTTGCTCTACAGGGCCCATCCTTCCATGGGGTACAGGTAGGACACCCCGGTCCCCTCCATTaGCGCATGGGTTGGCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: KVHVALQGPSFHGVQVGHPGPLH*RMGWLY Trigger: ATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGG...GTGTCCTACCTGTACCCCATGGAAGGATGGGCCCTGTAGAGCAACATGAACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | ACACGGGGCTCAGGTTGCAGGGCACTGGACACTTTAAATAATCTGCAGGGCTCAAGGCTCAGGTCCCTCTaGGATACACAGGTGGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: TRGSGCRALDTLNNLQGSRLRSL*DTQVAP Trigger: AGGAGCCACCTGTGTATCGCAGAGGGACCTGAGCCT...TGAGCCCTGCAGATTATTTAAAGTGTCCAGTGCCCTGCAACCTGAGCCCCGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| 3UTR CAA 72 bp | GCTGTGCCTAGAGCGCCCTATACTTCAAGGTTCATGTaGCTCTACAGGGCCCATCCTTCCATGGGGTACAGG | + |
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Preference number: 4 (lower is better) Translates to: AVPRAPYTSRFM*LYRAHPSMGYR Trigger: CCTGTACCCCATGGAAGGATGGGCCCTGTAGAGCAACATGAACCTTGAAGTATAGGGCGCTCTAGGCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR TCA 90 bp | CAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGACCACAGGGTCACTGGTaGCTAGGCTTGGGTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: QLSRPLASKDPQAKKVIRPQGHW*LGLGSQ Trigger: CTGGGAACCCAAGCCTAGTCACCAGTGACCCTGTGG...TCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTGGCTTCCAAAGACCCACGCACTGTGGAGTCCTTaGCACCAGAGGCACCCACGG | + |
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Preference number: 4 (lower is better) Translates to: KFGSEPISSADHWLPKTHALWSP*HQRHPR Trigger: CCGTGGGTGCCTCTGGTGGCAAGGACTCCACAGTGC...GTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR GCA 90 bp | AAATTTGGTTCAGAACCTATCAGCTCAGCAGACCACTGGCTTCCAAAGACCCACTTCTGCGAGGCAAACTaGAGAGGCCGGCACCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: KFGSEPISSADHWLPKTHFCEAN*RGRHLG Trigger: TCCCAGGTGCCGGCCTCTGCAGTTTGCCTCGCAGAA...GTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTGATAGGTTCTGAACCAAATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CCA 90 bp | GTCTACCTGCAGTTCACACCGACATACTTGACCAATGTCTTGATTAATGACTTTGCAGAGGCCGGCACCTaGGAAGTGCGCACCCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: VYLQFTPTYLTNVLINDFAEAGT*EVRTPR Trigger: GCGAGGGGTGCGCACTTCCCAGGTGCCGGCCTCTGC...AAAGTCATTAATCAAGACATTGGTCAAGTATGTCGGTGTGAACTGCAGGTAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CCA 90 bp | CAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGACCCTCCATTGCCGCATaGGTTGGCTTTATCTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: QLSRPLASKDPQAKKVIRPSIAA*VGFIFR Trigger: CCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGG...TCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | GCGCGCGCCTCCGCAGCACCCCGCAGAAGGTGCAGCAGGAGCGACTaGGGCCGGAGCCTGCGGTGCTGCGGGCCACGGCGTCCATCGTCC | + |
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Preference number: 5 (lower is better) Translates to: ARASAAPRRRCSRSD*GRSLRCCGPRRPSS Trigger: GGACGATGGACGCCGTGGCCCGCAGCACCGCAGGCTCCGGCCGCAGTCGCTCCTGCTGCACCTTCTGCGGGGTGCTGCGGAGGCGCGCGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | GCGCACCCTCCTCCAGCGCGCGCCTCCGCAGCACCCCGCAGAAGGTaGAGCAGGAGCGACTGCGGCCGGAGCCTGCGGTGCTGCGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: AHPPPARASAAPRRR*SRSDCGRSLRCCGP Trigger: TGGCCCGCAGCACCGCAGGCTCCGGCCGCAGTCGCTCCTGCTGCACCTTCTGCGGGGTGCTGCGGAGGCGCGCGCTGGAGGAGGGTGCGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | CACGATGGTGAGCGGCAGCTCCCAGCGCGCCGCCTGACTGCGCACTaGCTCCAGCGCGGCGTCCCGGTAGCCGCCGATGCCCTCATCCAC | + |
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Preference number: 5 (lower is better) Translates to: HDGERQLPARRLTAH*LQRGVPVAADALIH Trigger: GTGGATGAGGGCATCGGCGGCTACCGGGACGCCGCGCTGGAGGCAGTGCGCAGTCAGGCGGCGCGCTGGGAGCTGCCGCTCACCATCGTG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | CAGCACCCCGCAGAAGGTGCAGCAGGAGCGACTGCGGCCGGAGCCTaGGGTGCTGCGGGCCACGGCGTCCATCGTCCAGCCCCCGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: QHPAEGAAGATAAGA*GAAGHGVHRPAPEE Trigger: CTCTTCGGGGGCTGGACGATGGACGCCGTGGCCCGCAGCACCGCAGGCTCCGGCCGCAGTCGCTCCTGCTGCACCTTCTGCGGGGTGCTG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CCA 90 bp | AGGCGCGGCAGGCCTCGGTTGAGGCCATCCAGGAGGGCACAGGCCTaGCAGAGCTTGTGGCTGGCCAGGGCTCCGCAGCGGGAGCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: RRGRPRLRPSRRAQA*QSLWLARAPQREQV Trigger: CACCTGCTCCCGCTGCGGAGCCCTGGCCAGCCACAAGCTCTGCCAGGCCTGTGCCCTCCTGGATGGCCTCAACCGAGGCCTGCCGCGCCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | CCCCGCAGAAGGTGCAGCAGGAGCGACTGCGGCCGGAGCCTGCGGTaGTGCGGGCCACGGCGTCCATCGTCCAGCCCCCGAAGAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: PRRRCSRSDCGRSLR*CGPRRPSSSPRRDL Trigger: AAGATCTCTTCGGGGGCTGGACGATGGACGCCGTGGCCCGCAGCACCGCAGGCTCCGGCCGCAGTCGCTCCTGCTGCACCTTCTGCGGGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CCA 90 bp | ACAGCACCACCTCCTTCTGCGAGGCAAACTGCAGAGGCCGGCACCTaGGAAGTGCGCACCCCTCGCCCGTGGAGCCCAGCACCCCACCCC | + |
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Preference number: 5 (lower is better) Translates to: TAPPPSARQTAEAGT*EVRTPRPWSPAPHP Trigger: GGGGTGGGGTGCTGGGCTCCACGGGCGAGGGGTGCGCACTTCCCAGGTGCCGGCCTCTGCAGTTTGCCTCGCAGAAGGAGGTGGTGCTGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS TCA 90 bp | CGTCCATCGTCCAGCCCCCGAAGAGATCTTCGTAGGCCACGATGGTaGGCGGCAGCTCCCAGCGCGCCGCCTGACTGCGCACTGCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: RPSSSPRRDLRRPRW*AAAPSAPPDCALPP Trigger: TGGAGGCAGTGCGCAGTCAGGCGGCGCGCTGGGAGCTGCCGCTCACCATCGTGGCCTACGAAGATCTCTTCGGGGGCTGGACGATGGACG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | GTGGCTCCTGCCCGGTCCCCTCCATTCCCAAGGCTCAGGTCCCTCTaGGATACACAGGTGGCTCCTGCCCGGTCCTCTCCATTCCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: VAPARSPPFPRLRSL*DTQVAPARSSPFPG Trigger: CCCCGGGAATGGAGAGGACCGGGCAGGAGCCACCTGTGTATCGCAGAGGGACCTGAGCCTTGGGAATGGAGGGGACCGGGCAGGAGCCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | CTCCGCCACGGGGCTCAGGTCACACTGCGATACACAGGTGGCTCCTaGCCGGTCCCCTCCATTCCCAAGGCTCAGGTCCCTCTGCGATAC | + |
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Preference number: 5 (lower is better) Translates to: LRHGAQVTLRYTGGS*PVPSIPKAQVPLRY Trigger: GTATCGCAGAGGGACCTGAGCCTTGGGAATGGAGGGGACCGGGCAGGAGCCACCTGTGTATCGCAGTGTGACCTGAGCCCCGTGGCGGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CAA 90 bp | ATCCAGGATCACCTGCCTAGGGACTGGACCGCCCACAGTGGGCTGAGCCCTTCCCTGTGGAGGCTCAACTaGCAGCACACGGCGGCCCTT | + |
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Preference number: 5 (lower is better) Translates to: IQDHLPRDWTAHSGLSPSLWRLN*QHTAAL Trigger: AAGGGCCGCCGTGTGCTGCAAGTTGAGCCTCCACAG...GGAAGGGCTCAGCCCACTGTGGGCGGTCCAGTCCCTAGGCAGGTGATCCTGGAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | GCCCGGTCCCCTCCATTGCCGCATGGGTTGGCTTTATCTTTCGGTTaGTTGCAGGTGCAGGGTCCTGCTGGGGCCACAGGGTCACTGGTG | + |
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Preference number: 5 (lower is better) Translates to: ARSPPLPHGLALSFG*LQVQGPAGATGSLV Trigger: CACCAGTGACCCTGTGGCCCCAGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | TCCATTCCCGGGGCTCAGGTCACACTGCGATACACAGGTGGCTCCTaGCCGGTCCCCTCCATTGCCGCATGGGTTGGCTTTATCTTTCGG | + |
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Preference number: 5 (lower is better) Translates to: SIPGAQVTLRYTGGS*PVPSIAAWVGFIFR Trigger: CCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGGCAGGAGCCACCTGTGTATCGCAGTGTGACCTGAGCCCCGGGAATGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 90 bp | GGTCACACTGCGATACACAGGTGGCTCCTGCCCGGTCCCCTCCATTaGCGCATGGGTTGGCTTTATCTTTCGGTTGCTTGCAGGTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GHTAIHRWLLPGPLH*RMGWLYLSVACRCR Trigger: CCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGGCAGGAGCCACCTGTGTATCGCAGTGTGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CAA 90 bp | AATAATCTGCAGGGCTCAAGCGACTCTGCAGGGTACAGCCACTCCACACGGAAACTGGAGGAGGGGGCTTaGCTGCCGGAGCCAGAGCTA | + |
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Preference number: 5 (lower is better) Translates to: NNLQGSSDSAGYSHSTRKLEEGA*LPEPEL Trigger: TAGCTCTGGCTCCGGCAGCAAAGCCCCCTCCTCCAG...TTTCCGTGTGGAGTGGCTGTACCCTGCAGAGTCGCTTGAGCCCTGCAGATTATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CAA 90 bp | ACACGGGGCTCAGGTTGCAGGGCACTGGACACTTTAAATAATCTGCAGGGCTCAAGCACTGTGGAGTCCTaGCCACCAGAGGCACCCACG | + |
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Preference number: 5 (lower is better) Translates to: TRGSGCRALDTLNNLQGSSTVES*PPEAPT Trigger: CGTGGGTGCCTCTGGTGGCAAGGACTCCACAGTGCT...TGAGCCCTGCAGATTATTTAAAGTGTCCAGTGCCCTGCAACCTGAGCCCCGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS-3UTR CAA 90 bp | CAGCTCAGCAGACCACTGGCTTCCAAAGACCCACAAGCTAAGAAAGTCATCAGATTATCTTTCGGTTGCTaGCAGGTGCAGGGTCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: QLSRPLASKDPQAKKVIRLSFGC*QVQGPA Trigger: AGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAA...TCTGATGACTTTCTTAGCTTGTGGGTCTTTGGAAGCCAGTGGTCTGCTGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | GAGCGGCAGCTCCCAGCGCGCCGCCTGACTGCGCACTaGCTCCAGCGCGGCGTCCCGGTAGCCGCCGATGCC | + |
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Preference number: 6 (lower is better) Translates to: ERQLPARRLTAH*LQRGVPVAADA Trigger: GGCATCGGCGGCTACCGGGACGCCGCGCTGGAGGCAGTGCGCAGTCAGGCGGCGCGCTGGGAGCTGCCGCTC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | CCTCCAGCGCGCGCCTCCGCAGCACCCCGCAGAAGGTaGAGCAGGAGCGACTGCGGCCGGAGCCTGCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: PPARASAAPRRR*SRSDCGRSLRC Trigger: GCACCGCAGGCTCCGGCCGCAGTCGCTCCTGCTGCACCTTCTGCGGGGTGCTGCGGAGGCGCGCGCTGGAGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CCA 72 bp | AGGCCTCGGTTGAGGCCATCCAGGAGGGCACAGGCCTaGCAGAGCTTGTGGCTGGCCAGGGCTCCGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: RPRLRPSRRAQA*QSLWLARAPQR Trigger: CCGCTGCGGAGCCCTGGCCAGCCACAAGCTCTGCCAGGCCTGTGCCCTCCTGGATGGCCTCAACCGAGGCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CCA 72 bp | CCTCCTTCTGCGAGGCAAACTGCAGAGGCCGGCACCTaGGAAGTGCGCACCCCTCGCCCGTGGAGCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PPSARQTAEAGT*EVRTPRPWSPA Trigger: TGCTGGGCTCCACGGGCGAGGGGTGCGCACTTCCCAGGTGCCGGCCTCTGCAGTTTGCCTCGCAGAAGGAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS TCA 72 bp | TCCAGCCCCCGAAGAGATCTTCGTAGGCCACGATGGTaGGCGGCAGCTCCCAGCGCGCCGCCTGACTGCGCA | + |
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Preference number: 6 (lower is better) Translates to: SSPRRDLRRPRW*AAAPSAPPDCA Trigger: TGCGCAGTCAGGCGGCGCGCTGGGAGCTGCCGCTCACCATCGTGGCCTACGAAGATCTCTTCGGGGGCTGGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | GCCCGGTCCCCTCCATTCCCAAGGCTCAGGTCCCTCTaGGATACACAGGTGGCTCCTGCCCGGTCCTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: ARSPPFPRLRSL*DTQVAPARSSP Trigger: TGGAGAGGACCGGGCAGGAGCCACCTGTGTATCGCAGAGGGACCTGAGCCTTGGGAATGGAGGGGACCGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | GGGGCTCAGGTCACACTGCGATACACAGGTGGCTCCTaGCCGGTCCCCTCCATTCCCAAGGCTCAGGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: GAQVTLRYTGGS*PVPSIPKAQVP Trigger: AGGGACCTGAGCCTTGGGAATGGAGGGGACCGGGCAGGAGCCACCTGTGTATCGCAGTGTGACCTGAGCCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | GGGGCTCAGGTCACACTGCGATACACAGGTGGCTCCTaGCCGGTCCCCTCCATTGCCGCATGGGTTGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: GAQVTLRYTGGS*PVPSIAAWVGF Trigger: AAAGCCAACCCATGCGGCAATGGAGGGGACCGGGCAGGAGCCACCTGTGTATCGCAGTGTGACCTGAGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CAA 90 bp | TGCCCGGTCCCCTCCATTGCCGCATGGGTTGGCTTTATCTTTCGGTaGCTTGCAGGTGCAGGGTCCTGCTGGGGCCACAGGGTCACTGGT | + |
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Preference number: 6 (lower is better) Translates to: CPVPSIAAWVGFIFR*LAGAGSCWGHRVTG Trigger: ACCAGTGACCCTGTGGCCCCAGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CAA 90 bp | CGGTCCCCTCCATTGCCGCATGGGTTGGCTTTATCTTTCGGTTGCTaGCAGGTGCAGGGTCCTGCTGGGGCCACAGGGTCACTGGTGACT | + |
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Preference number: 6 (lower is better) Translates to: RSPPLPHGLALSFGC*QVQGPAGATGSLVT Trigger: AGTCACCAGTGACCCTGTGGCCCCAGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | CCTCCATTGCCGCATGGGTTGGCTTTATCTTTCGGTTaGTTGCAGGTGCAGGGTCCTGCTGGGGCCACAGGG | + |
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Preference number: 6 (lower is better) Translates to: PPLPHGLALSFG*LQVQGPAGATG Trigger: CCCTGTGGCCCCAGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CAA 72 bp | CCCTCCATTGCCGCATGGGTTGGCTTTATCTTTCGGTaGCTTGCAGGTGCAGGGTCCTGCTGGGGCCACAGG | + |
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Preference number: 6 (lower is better) Translates to: PSIAAWVGFIFR*LAGAGSCWGHR Trigger: CCTGTGGCCCCAGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS GCA 72 bp | GCGATACACAGGTGGCTCCTGCCCGGTCCCCTCCATTaGCGCATGGGTTGGCTTTATCTTTCGGTTGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: AIHRWLLPGPLH*RMGWLYLSVAC Trigger: GCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGGCAGGAGCCACCTGTGTATCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CCA 72 bp | ACAGGTGGCTCCTGCCCGGTCCCCTCCATTGCCGCATaGGTTGGCTTTATCTTTCGGTTGCTTGCAGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: TGGSCPVPSIAA*VGFIFRLLAGA Trigger: TGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGGAGGGGACCGGGCAGGAGCCACCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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| CDS CAA 72 bp | CCATTGCCGCATGGGTTGGCTTTATCTTTCGGTTGCTaGCAGGTGCAGGGTCCTGCTGGGGCCACAGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: PLPHGLALSFGC*QVQGPAGATGS Trigger: TGACCCTGTGGCCCCAGCAGGACCCTGCACCTGCAAGCAACCGAAAGATAAAGCCAACCCATGCGGCAATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038332.9 |
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