Pregenerated sensors for CTSZ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016256Ensembl transcript IDs: ENSMUST00000016400.9
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGTTTCATCCTTTACCGTCTCCTCTCGGGATGCAGTCCACACTCTaGTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGT | + |
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Preference number: 1 (lower is better) Translates to: VFHPLPSPLGMQSTL*SSCPQALFIAVWTC Trigger: ACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGACCAGAGTGTGGACTGCATCCCGAGAGGAGACGGTAAAGGATGAAACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| 3UTR CCA 90 bp | TCCACACTCTGGTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTaGACATGTCCAGTGTCAGTAATTAATCACCCCTCCCTGTCATGG | + |
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Preference number: 1 (lower is better) Translates to: STLWSSCPQALFIAV*TCPVSVINHPSLSW Trigger: CCATGACAGGGAGGGGTGATTAATTACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGACCAGAGTGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| 3UTR CAA 90 bp | TGGAGGAGGCAGGCCTGGAGGGTACGGCGGAGGGTCCCAGTGCAGTaGTGTTTCATCCTTTACCGTCTCCTCTCGGGATGCAGTCCACAC | + |
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Preference number: 2 (lower is better) Translates to: WRRQAWRVRRRVPVQ*CFILYRLLSGCSPH Trigger: GTGTGGACTGCATCCCGAGAGGAGACGGTAAAGGATGAAACACAACTGCACTGGGACCCTCCGCCGTACCCTCCAGGCCTGCCTCCTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| 3UTR TCA 72 bp | CCCATGGATTCCAGGGCTCCAGATCTGGTGATAAGTTaGGCTGTCCTAAACCATAGCTCTCTTCTCCGGGTG | + |
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Preference number: 3 (lower is better) Translates to: PMDSRAPDLVIS*AVLNHSSLLRV Trigger: CACCCGGAGAAGAGAGCTATGGTTTAGGACAGCTCAACTTATCACCAGATCTGGAGCCCTGGAATCCATGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| 3UTR CCA 72 bp | CCTTTACCGTCTCCTCTCGGGATGCAGTCCACACTCTaGTCCTCATGTCCACAAGCACTGTTTATAGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: PLPSPLGMQSTL*SSCPQALFIAV Trigger: GACAGCTATAAACAGTGCTTGTGGACATGAGGACCAGAGTGTGGACTGCATCCCGAGAGGAGACGGTAAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| 3UTR CCA 72 bp | TGGTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTaGACATGTCCAGTGTCAGTAATTAATCACCCCTCC | + |
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Preference number: 3 (lower is better) Translates to: WSSCPQALFIAV*TCPVSVINHPS Trigger: GGAGGGGTGATTAATTACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | CTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTGGAGGGCTCACCAGGGGCAGCTGCTaGACCGACCCCGACGACGCC | + |
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Preference number: 4 (lower is better) Translates to: LRVAEGKHCRRGGRPGGLTRGSC*TDPDDA Trigger: GGCGTCGTCGGGGTCGGTGCAGCAGCTGCCCCTGGT...GAGCCCTCCAGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | AGCTCTCTTCTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTAGCACCAGGGGCAGCTaGTGCACCGACCCCGACGAC | + |
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Preference number: 4 (lower is better) Translates to: SSLLRVAEGKHCRRGGRPSTRGS*CTDPDD Trigger: GTCGTCGGGGTCGGTGCAGCAGCTGCCCCTGGTGCT...AGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAGAAGAGAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | AGCTCTCTTCTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTCTGCCATGGCACTGGTaGTGCCGTGGGCCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SSLLRVAEGKHCRRGGRPLPWHW*CRGPSR Trigger: CCTGCTGGGCCCACGGCAGCACCAGTGCCATGGCAG...AGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAGAAGAGAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | CTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTGGAGGGCTCCTTGGGGAGATCCGCTaGGGACAGGTACTCATGCGG | + |
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Preference number: 4 (lower is better) Translates to: LRVAEGKHCRRGGRPGGLLGEIR*GQVLMR Trigger: CCGCATGAGTACCTGTCCCCAGCGGATCTCCCCAAG...GAGCCCTCCAGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | TGGTGGAGGAGGCAGGCCTGGAGGGTACGGCGGAGGGTCCCAGTGCAGTTGTGTTGGCCTGGTAGTTGTTaGAGGTCTCATCGGGGATGC | + |
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Preference number: 4 (lower is better) Translates to: WWRRQAWRVRRRVPVQLCWPGSC*RSHRGC Trigger: GCATCCCCGATGAGACCTGCAACAACTACCAGGCCA...ACACAACTGCACTGGGACCCTCCGCCGTACCCTCCAGGCCTGCCTCCTCCACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | CTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTGGAGGGCTCGTACGGACAGCAGGATaGAGGGCCATGCACCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LRVAEGKHCRRGGRPGGLVRTAG*RAMHLS Trigger: GGAAAGGTGCATGGCCCTCCATCCTGCTGTCCGTAC...GAGCCCTCCAGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | CTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTGGAGGGCTCCTCCCTTGTAGGTGCTaGTCACGATCCTCATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LRVAEGKHCRRGGRPGGLLPCRC*SRSSSS Trigger: GCTGGATGAGGATCGTGACCAGCACCTACAAGGGAG...GAGCCCTCCAGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | GTGGAGGAGGCAGGCCTGGAGGGTACGGCGGAGGGTCCCAGTGCAGTTGTGTTTCACAGTCTTGGTCCTTaGCCTGGTAGTTGTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VEEAGLEGTAEGPSAVVFHSLGP*PGSCCR Trigger: CCTGCAACAACTACCAGGCCAAGGACCAAGACTGTG...AAACACAACTGCACTGGGACCCTCCGCCGTACCCTCCAGGCCTGCCTCCTCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR TCA 90 bp | AGCTCTCTTCTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTCCAGGGTTCGCCCCATaGATTTCGGACAATCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: SSLLRVAEGKHCRRGGRPPGFAP*ISDNPV Trigger: TACTGGATTGTCCGAAATTCATGGGGCGAACCCTGG...AGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAGAAGAGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | GTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTGCCGAGGATAAGTCCTaGGCCCCAGCAGAGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VLMSTSTVYSCLDMSSVSAEDKS*APAEPA Trigger: AGCTGGCTCTGCTGGGGCGCAGGACTTATCCTCGGC...ACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | TCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTACCCAGCAGAGCCAGCTaGTCCCCGCGAATGGGATGG | + |
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Preference number: 4 (lower is better) Translates to: SSCPQALFIAVWTCPVSVPSRAS*SPRMGW Trigger: CCATCCCATTCGCGGGGACCAGCTGGCTCTGCTGGG...TACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | CCTCTCGGGATGCAGTCCACACTCTGGTCCTCATGTCCACAAGCACTGTTTATATGGGGTCCCCAAATGTaGAGGCACTCTCGATGGCAA | + |
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Preference number: 4 (lower is better) Translates to: PLGMQSTLWSSCPQALFIWGPQM*RHSRWQ Trigger: TTGCCATCGAGAGTGCCTGCACATTTGGGGACCCCA...TATAAACAGTGCTTGTGGACATGAGGACCAGAGTGTGGACTGCATCCCGAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | TCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTAGCTGGTCCCCGCGAATaGGATGGTAGCAAGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: SSCPQALFIAVWTCPVSVAGPRE*DGSKSG Trigger: GCCAGACTTGCTACCATCCCATTCGCGGGGACCAGC...TACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | ATGCAGTCCACACTCTGGTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGCAGGATGGAGGGCCATaGACCTTTCCTCTTGATGTT | + |
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Preference number: 4 (lower is better) Translates to: MQSTLWSSCPQALFIAVWQDGGP*TFPLDV Trigger: AACATCAAGAGGAAAGGTGCATGGCCCTCCATCCTG...CCAGACAGCTATAAACAGTGCTTGTGGACATGAGGACCAGAGTGTGGACTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | TCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTATGCCTCCCTTGTAGGTaGTGGTCACGATCCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SSCPQALFIAVWTCPVSVCLPCR*WSRSSS Trigger: GGATGAGGATCGTGACCAGCACCTACAAGGGAGGCA...TACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR GCA 90 bp | TCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTATGTAGCTGTCACCTGTaGCTCCCTTGTAGGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SSCPQALFIAVWTCPVSVCSCHL*LPCRCW Trigger: CCAGCACCTACAAGGGAGGCACAGGTGACAGCTACA...TACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | TCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTATCCAGTCCCAATTCTTaGGGAGATCCGCTGGGGACA | + |
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Preference number: 4 (lower is better) Translates to: SSCPQALFIAVWTCPVSVSSPNS*GDPLGT Trigger: TGTCCCCAGCGGATCTCCCCAAGAATTGGGACTGGA...TACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | GTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTGGAACCACAGTACTGTaGGATGTGCTGGTTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: VLMSTSTVYSCLDMSSVSGTTVL*DVLVPG Trigger: ACCAGGAACCAGCACATCCCACAGTACTGTGGTTCC...ACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CCA 90 bp | GTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTGTGCAGGTCCCACACTaGTTAAACTTGTCACAGTCT | + |
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Preference number: 4 (lower is better) Translates to: VLMSTSTVYSCLDMSSVSVQVPH*LNLSQS Trigger: AGACTGTGACAAGTTTAACCAGTGTGGGACCTGCAC...ACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 90 bp | GGGATGGTAGCAAGTCTGGCCCGAGCGGAAGTAGAGTCTGGCCCGTaGCGCACTCGCCAACAGCAACATCAGCAGCACCAGGGGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GMVASLARAEVESGP*RTRQQQHQQHQGQL Trigger: CAGCTGCCCCTGGTGCTGCTGATGTTGCTGTTGGCGAGTGCGGCACGGGCCAGACTCTACTTCCGCTCGGGCCAGACTTGCTACCATCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 90 bp | GAGGATAAGTCCTGCGCCCCAGCAGAGCCAGCTGGTCCCCGCGAATaGGATGGTAGCAAGTCTGGCCCGAGCGGAAGTAGAGTCTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: EDKSCAPAEPAGPRE*DGSKSGPSGSRVWP Trigger: GGGCCAGACTCTACTTCCGCTCGGGCCAGACTTGCTACCATCCCATTCGCGGGGACCAGCTGGCTCTGCTGGGGCGCAGGACTTATCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 90 bp | CGCGAATGGGATGGTAGCAAGTCTGGCCCGAGCGGAAGTAGAGTCTaGCCCGTGCCGCACTCGCCAACAGCAACATCAGCAGCACCAGGG | + |
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Preference number: 5 (lower is better) Translates to: REWDGSKSGPSGSRV*PVPHSPTATSAAPG Trigger: CCCTGGTGCTGCTGATGTTGCTGTTGGCGAGTGCGGCACGGGCCAGACTCTACTTCCGCTCGGGCCAGACTTGCTACCATCCCATTCGCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CAA 90 bp | GTGGAGGAGGCAGGCCTGGAGGGTACGGCGGAGGGTCCCAGTGCAGTTGTGTTTCACACCGGAAGGTCATaGCCCCCTTCACAAGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VEEAGLEGTAEGPSAVVFHTGRS*PPSQEP Trigger: TGGCTCTTGTGAAGGGGGCAATGACCTTCCGGTGTG...AAACACAACTGCACTGGGACCCTCCGCCGTACCCTCCAGGCCTGCCTCCTCCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CAA 90 bp | CTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTGGAGGGCTCTACTCGATGCCATCGTaGCTGACACCCCAGCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LRVAEGKHCRRGGRPGGLYSMPS*LTPQPA Trigger: AGCTGGCTGGGGTGTCAGCAACGATGGCATCGAGTA...GAGCCCTCCAGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 90 bp | CGATGGCAAGGTTGTAGCTGTCACCTGTGCCTCCCTTGTAGGTGCTaGTCACGATCCTCATCCAGCCTTTCTCACCCCAGGGTTCGCCCC | + |
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Preference number: 5 (lower is better) Translates to: RWQGCSCHLCLPCRC*SRSSSSLSHPRVRP Trigger: GGGGCGAACCCTGGGGTGAGAAAGGCTGGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CAA 90 bp | AGCTCTCTTCTCCGGGTGGCTGAAGGCAAGCACTGTAGAAGAGGAGGCAGGCCTTCGGGGATGCCATGCTaGTGGGCATACTCCCACACC | + |
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Preference number: 5 (lower is better) Translates to: SSLLRVAEGKHCRRGGRPSGMPC*WAYSHT Trigger: GGTGTGGGAGTATGCCCACAAGCATGGCATCCCCGA...AGGCCTGCCTCCTCTTCTACAGTGCTTGCCTTCAGCCACCCGGAGAAGAGAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 90 bp | GACACCGTTCACATTTCTCCAGTCCCAATTCTTGGGGAGATCCGCTaGGGACAGGTACTCATGCGGCCGAGGATAAGTCCTGCGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: DTVHISPVPILGEIR*GQVLMRPRISPAPQ Trigger: CTGGGGCGCAGGACTTATCCTCGGCCGCATGAGTACCTGTCCCCAGCGGATCTCCCCAAGAATTGGGACTGGAGAAATGTGAACGGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 90 bp | AGTCTTGGTCCTTGGCCTGGTAGTTGTTGCAGGTCTCATCGGGGATaGCATGCTTGTGGGCATACTCCCACACCGGAAGGTCATTGCCCC | + |
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Preference number: 5 (lower is better) Translates to: SLGPWPGSCCRSHRG*HACGHTPTPEGHCP Trigger: GGGGCAATGACCTTCCGGTGTGGGAGTATGCCCACAAGCATGGCATCCCCGATGAGACCTGCAACAACTACCAGGCCAAGGACCAAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 90 bp | TCTCGATGGCAAGGTTGTAGCTGTCACCTGTGCCTCCCTTGTAGGTaGTGGTCACGATCCTCATCCAGCCTTTCTCACCCCAGGGTTCGC | + |
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Preference number: 5 (lower is better) Translates to: SRWQGCSCHLCLPCR*WSRSSSSLSHPRVR Trigger: GCGAACCCTGGGGTGAGAAAGGCTGGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS TCA 90 bp | GAAGGTCATTGCCCCCTTCACAAGAGCCAGCATTGCCACAGTCAATaGCATTCTGTACGGACAGCAGGATGGAGGGCCATGCACCTTTCC | + |
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Preference number: 5 (lower is better) Translates to: EGHCPLHKSQHCHSQ*HSVRTAGWRAMHLS Trigger: GGAAAGGTGCATGGCCCTCCATCCTGCTGTCCGTACAGAATGTCATTGACTGTGGCAATGCTGGCTCTTGTGAAGGGGGCAATGACCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 90 bp | CAAATGTGCAGGCACTCTCGATGGCAAGGTTGTAGCTGTCACCTGTaGCTCCCTTGTAGGTGCTGGTCACGATCCTCATCCAGCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: QMCRHSRWQGCSCHL*LPCRCWSRSSSSLS Trigger: AGAAAGGCTGGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCGAGAGTGCCTGCACATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 90 bp | GCCACAGTCAATGACATTCTGTACGGACAGCAGGATGGAGGGCCATaGACCTTTCCTCTTGATGTTGATTCGGTCTGCCATGGCACTGGT | + |
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Preference number: 5 (lower is better) Translates to: ATVNDILYGQQDGGP*TFPLDVDSVCHGTG Trigger: ACCAGTGCCATGGCAGACCGAATCAACATCAAGAGGAAAGGTGCATGGCCCTCCATCCTGCTGTCCGTACAGAATGTCATTGACTGTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CAA 90 bp | TCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGACATGTCCAGTGTCAGTACTCCAGTCCCAATTCTaGGGGAGATCCGCTGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: SSCPQALFIAVWTCPVSVLQSQF*GRSAGD Trigger: GTCCCCAGCGGATCTCCCCAAGAATTGGGACTGGAG...TACTGACACTGGACATGTCCAGACAGCTATAAACAGTGCTTGTGGACATGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS-3UTR CAA 90 bp | ATGCAGTCCACACTCTGGTCCTCATGTCCACAAGCACTGTTTATAGCTGTCTGGAAACTTGTCACAGTCTaGGTCCTTGGCCTGGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: MQSTLWSSCPQALFIAVWKLVTV*VLGLVV Trigger: AACTACCAGGCCAAGGACCAAGACTGTGACAAGTTT...CCAGACAGCTATAAACAGTGCTTGTGGACATGAGGACCAGAGTGTGGACTGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 72 bp | GATGGTAGCAAGTCTGGCCCGAGCGGAAGTAGAGTCTaGCCCGTGCCGCACTCGCCAACAGCAACATCAGCA | + |
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Preference number: 6 (lower is better) Translates to: DGSKSGPSGSRV*PVPHSPTATSA Trigger: TGCTGATGTTGCTGTTGGCGAGTGCGGCACGGGCCAGACTCTACTTCCGCTCGGGCCAGACTTGCTACCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 72 bp | CCTTGGCCTGGTAGTTGTTGCAGGTCTCATCGGGGATaGCATGCTTGTGGGCATACTCCCACACCGGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: PWPGSCCRSHRG*HACGHTPTPEG Trigger: ACCTTCCGGTGTGGGAGTATGCCCACAAGCATGGCATCCCCGATGAGACCTGCAACAACTACCAGGCCAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 72 bp | GGTTGTAGCTGTCACCTGTGCCTCCCTTGTAGGTGCTaGTCACGATCCTCATCCAGCCTTTCTCACCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: GCSCHLCLPCRC*SRSSSSLSHPR Trigger: CCTGGGGTGAGAAAGGCTGGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 72 bp | CAAGGTTGTAGCTGTCACCTGTGCCTCCCTTGTAGGTaGTGGTCACGATCCTCATCCAGCCTTTCTCACCCC | + |
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Preference number: 6 (lower is better) Translates to: QGCSCHLCLPCR*WSRSSSSLSHP Trigger: GGGGTGAGAAAGGCTGGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 72 bp | AGGCACTCTCGATGGCAAGGTTGTAGCTGTCACCTGTaGCTCCCTTGTAGGTGCTGGTCACGATCCTCATCC | + |
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Preference number: 6 (lower is better) Translates to: RHSRWQGCSCHL*LPCRCWSRSSS Trigger: GGATGAGGATCGTGACCAGCACCTACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCGAGAGTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CAA 72 bp | ACGGACAGCAGGATGGAGGGCCATGCACCTTTCCTCTaGATGTTGATTCGGTCTGCCATGGCACTGGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: TDSRMEGHAPFL*MLIRSAMALVL Trigger: CAGCACCAGTGCCATGGCAGACCGAATCAACATCAAGAGGAAAGGTGCATGGCCCTCCATCCTGCTGTCCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CAA 90 bp | TCGGGGATGCCATGCTTGTGGGCATACTCCCACACCGGAAGGTCATaGCCCCCTTCACAAGAGCCAGCATTGCCACAGTCAATGACATTC | + |
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Preference number: 6 (lower is better) Translates to: SGMPCLWAYSHTGRS*PPSQEPALPQSMTF Trigger: GAATGTCATTGACTGTGGCAATGCTGGCTCTTGTGAAGGGGGCAATGACCTTCCGGTGTGGGAGTATGCCCACAAGCATGGCATCCCCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 72 bp | CACATTTCTCCAGTCCCAATTCTTGGGGAGATCCGCTaGGGACAGGTACTCATGCGGCCGAGGATAAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: HISPVPILGEIR*GQVLMRPRISP Trigger: AGGACTTATCCTCGGCCGCATGAGTACCTGTCCCCAGCGGATCTCCCCAAGAATTGGGACTGGAGAAATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 72 bp | ACTTGTCACAGTCTTGGTCCTTGGCCTGGTAGTTGTTaGAGGTCTCATCGGGGATGCCATGCTTGTGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: TCHSLGPWPGSC*RSHRGCHACGH Trigger: ATGCCCACAAGCATGGCATCCCCGATGAGACCTGCAACAACTACCAGGCCAAGGACCAAGACTGTGACAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CCA 72 bp | AAACAATGGGGTCCCCAAATGTGCAGGCACTCTCGATaGCAAGGTTGTAGCTGTCACCTGTGCCTCCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: KQWGPQMCRHSR*QGCSCHLCLPC Trigger: ACAAGGGAGGCACAGGTGACAGCTACAACCTTGCCATCGAGAGTGCCTGCACATTTGGGGACCCCATTGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CAA 90 bp | GGTTCGCCCCATGAATTTCGGACAATCCAGTACTCGATGCCATCGTaGCTGACACCCCAGCCAGCTACAGAGATGATGTGGTTGATAACG | + |
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Preference number: 6 (lower is better) Translates to: GSPHEFRTIQYSMPS*LTPQPATEMMWLIT Trigger: CGTTATCAACCACATCATCTCTGTAGCTGGCTGGGGTGTCAGCAACGATGGCATCGAGTACTGGATTGTCCGAAATTCATGGGGCGAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS CAA 72 bp | CATGAATTTCGGACAATCCAGTACTCGATGCCATCGTaGCTGACACCCCAGCCAGCTACAGAGATGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: HEFRTIQYSMPS*LTPQPATEMMW Trigger: CCACATCATCTCTGTAGCTGGCTGGGGTGTCAGCAACGATGGCATCGAGTACTGGATTGTCCGAAATTCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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| CDS GCA 72 bp | AATGACATTCTGTACGGACAGCAGGATGGAGGGCCATaGACCTTTCCTCTTGATGTTGATTCGGTCTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: NDILYGQQDGGP*TFPLDVDSVCH Trigger: ATGGCAGACCGAATCAACATCAAGAGGAAAGGTGCATGGCCCTCCATCCTGCTGTCCGTACAGAATGTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016400.9 |
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