Pregenerated sensors for CTSR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055679Ensembl transcript IDs: ENSMUST00000021889.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CATGATGTCAAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTaGCTCTTCAGGGACACAAGTCTTGAATATACCAAGCAAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: HDVKIVEGSQNHITR*LFRDTSLEYTKQRL Trigger: CAGCCTTTGCTTGGTATATTCAAGACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTTGACATCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| 3UTR-3UTR CAA 90 bp | ATCACATTACAAGGTTGCTCTTCAGGGACACAAGTCTTGAATATACCAAGCAAACCTAGAAATGCTGTCTaGTGCCAAAACCTTCCTTGT | + |
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Preference number: 3 (lower is better) Translates to: ITLQGCSSGTQVLNIPSKPRNAV*CQNLPC Trigger: ACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGG...TTTGCTTGGTATATTCAAGACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | AGCCCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGGCACACTCAGAGGGGTaGGTTTGCCCGTTTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SPPLEMLSCAKTFLVATRAHSEG*VCPFAR Trigger: TCTGGCAAACGGGCAAACTCACCCCTCTGAGTGTGC...CCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | AGCCCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGCAGCTTCCCGTTTCATaGTACTTTTCCCCTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SPPLEMLSCAKTFLVATRQLPVS*YFSPLC Trigger: ACAGAGAGGGGAAAAGTATCATGAAACGGGAAGCTG...CCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | AGCCCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGTACCCCAGCTATTCTTaGTCAGCCAGTAGTGATTAC | + |
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Preference number: 4 (lower is better) Translates to: SPPLEMLSCAKTFLVATRYPSYS*SASSDY Trigger: GTAATCACTACTGGCTGATCAAGAATAGCTGGGGTA...CCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR GCA 90 bp | CCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGTTGTTCATATGGATATGTTaGCTCAGACTCCAGACCACC | + |
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Preference number: 4 (lower is better) Translates to: PPLEMLSCAKTFLVATRLFIWIC*LRLQTT Trigger: GGTGGTCTGGAGTCTGAGGCAACATATCCATATGAA...CAACCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | CCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGTTGCTTGAAAGACTCATGTaGAGCATCAATTCCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: PPLEMLSCAKTFLVATRLLERLM*SINSSS Trigger: ACTGCTGGAATTGATGCTTCACATGAGTCTTTCAAG...CAACCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR GCA 90 bp | ATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACACAAGTCAGTCCACCAGGTTCTaGACACTCAGAGGGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: IVEGSQNHITRLLFRDTSQSTRF*TLRGVS Trigger: ACTCACCCCTCTGAGTGTGCAGAACCTGGTGGACTG...ACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR GCA 90 bp | CTAGCAGATAGCCCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGTCCAGACCACCATTGTaGAAAACATACTGGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LADSPPLEMLSCAKTFLVSRPPL*KTYWKA Trigger: TGCCTTCCAGTATGTTTTGCACAATGGTGGTCTGGA...CACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGGGCTATCTGCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | CCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGTTGTGGATTATACCTGCATaGTCCATCTTTCCCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: PPLEMLSCAKTFLVATRLWIIPA*SIFPFI Trigger: TATGAAGGGAAAGATGGACCATGCAGGTATAATCCA...CAACCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | GTCAAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACCAACCATTGTTGCCTTaGGGTTTAGAACAGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: VKIVEGSQNHITRLLFRDQPLLP*GLEQST Trigger: GGTGGACTGTTCTAAACCTCAAGGCAACAATGGTTG...GTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR GCA 90 bp | AAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACACATTGCCAGATTGCCTGTaGTTCTATGGCACCAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: KIVEGSQNHITRLLFRDTLPDCL*FYGTSH Trigger: GTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAA...TGTGTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | GTCAAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACTTGCCTGTGCTTCTATaGCACCAGTCACAGCAAATG | + |
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Preference number: 4 (lower is better) Translates to: VKIVEGSQNHITRLLFRDLPVLL*HQSQQM Trigger: CATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAA...GTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | GTCAAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACAGGATATCCTCACTTTaGGGGAGGGACACAAATCCT | + |
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Preference number: 4 (lower is better) Translates to: VKIVEGSQNHITRLLFRDRISSL*GRDTNP Trigger: AGGATTTGTGTCCCTCCCCCAAAGTGAGGATATCCT...GTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| 3UTR CAA 72 bp | ATCACATTACAAGGTTGCTCTTCAGGGACACAAGTCTaGAATATACCAAGCAAAGGCTGGTCGCTGACTAGC | + |
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Preference number: 4 (lower is better) Translates to: ITLQGCSSGTQV*NIPSKGWSLTS Trigger: GCTAGTCAGCGACCAGCCTTTGCTTGGTATATTCAAGACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | CTAGCAGATAGCCCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGCAATCATCATTTTCCTaGATTCTTCATCAGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LADSPPLEMLSCAKTFLVQSSFS*ILHQSG Trigger: ACCAGACTGATGAAGAATTCAGGAAAATGATGATTG...CACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGGGCTATCTGCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR GCA 90 bp | CTAGCAGATAGCCCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGTTTATCTTCCAGTCTTaGCATTCAGCATCCAAACTT | + |
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Preference number: 4 (lower is better) Translates to: LADSPPLEMLSCAKTFLVFIFQS*HSASKL Trigger: AAGTTTGGATGCTGAATGGCAAGACTGGAAGATAAA...CACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGGGCTATCTGCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | GTCAAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACGCCAATCGACAAATTTaGGGAGAATACTGCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: VKIVEGSQNHITRLLFRDANRQI*GEYCQL Trigger: AAGCTGGCAGTATTCTCCCCAAATTTGTCGATTGGC...GTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | ATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACACAAGTAGCCTTAGAATTCTTTaGATTATACCTGCATGGTCC | + |
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Preference number: 4 (lower is better) Translates to: IVEGSQNHITRLLFRDTSSLRIL*IIPAWS Trigger: GGACCATGCAGGTATAATCCAAAGAATTCTAAGGCT...ACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | AAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACACAATCACTGCTACAATTTaGCTCATGGTAAATACCTCC | + |
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Preference number: 4 (lower is better) Translates to: KIVEGSQNHITRLLFRDTITATI*LMVNTS Trigger: GGAGGTATTTACCATGAGCCAAATTGTAGCAGTGAT...TGTGTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR TCA 90 bp | ATCACATTACAAGGTTGCTCTTCAGGGACACAAGTCTTGAATATACCAAGCAAACTTTTCCCCTCTCTGTaGGTCCAAACTGAAATTTCA | + |
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Preference number: 4 (lower is better) Translates to: ITLQGCSSGTQVLNIPSKLFPSL*VQTEIS Trigger: TGAAATTTCAGTTTGGACTCACAGAGAGGGGAAAAG...TTTGCTTGGTATATTCAAGACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR GCA 90 bp | ATCACATTACAAGGTTGCTCTTCAGGGACACAAGTCTTGAATATACCAAGCAAAGAGTCACAGTATCACTaGTACAATTTGGCTCATGGT | + |
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Preference number: 4 (lower is better) Translates to: ITLQGCSSGTQVLNIPSKESQYH*YNLAHG Trigger: ACCATGAGCCAAATTGTAGCAGTGATACTGTGACTC...TTTGCTTGGTATATTCAAGACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CCA 90 bp | ATCACATTACAAGGTTGCTCTTCAGGGACACAAGTCTTGAATATACCAAGCAAATTGTGCAAAACATACTaGAAGGCATTGTATGTATCA | + |
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Preference number: 4 (lower is better) Translates to: ITLQGCSSGTQVLNIPSKLCKTY*KALYVS Trigger: TGATACATACAATGCCTTCCAGTATGTTTTGCACAA...TTTGCTTGGTATATTCAAGACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS GCA 90 bp | CAGTCCACCAGGTTCTGCACACTCAGAGGGGTGAGTTTGCCCGTTTaGCAGATTGCCTGTGCTTCTATGGCACCAGTCACAGCAAATGCC | + |
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Preference number: 5 (lower is better) Translates to: QSTRFCTLRGVSLPV*QIACASMAPVTANA Trigger: GGCATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAAACGGGCAAACTCACCCCTCTGAGTGTGCAGAACCTGGTGGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS GCA 90 bp | CTGCACACTCAGAGGGGTGAGTTTGCCCGTTTGCCAGATTGCCTGTaGTTCTATGGCACCAGTCACAGCAAATGCCCAACAAGCATCACA | + |
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Preference number: 5 (lower is better) Translates to: LHTQRGEFARLPDCL*FYGTSHSKCPTSIT Trigger: TGTGATGCTTGTTGGGCATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAAACGGGCAAACTCACCCCTCTGAGTGTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CAA 90 bp | CCTCCCCTAGAAATGCTGTCTTGTGCCAAAACCTTCCTTGTGGCCACCAGGTTGAGGCTGTTCTCCCTGTaGTGTAGTTTGATCATTTTC | + |
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Preference number: 5 (lower is better) Translates to: PPLEMLSCAKTFLVATRLRLFSL*CSLIIF Trigger: GAAAATGATCAAACTACACAACAGGGAGAACAGCCT...CAACCTGGTGGCCACAAGGAAGGTTTTGGCACAAGACAGCATTTCTAGGGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CAA 90 bp | GTCAAAATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACCCACAGTGGTTGTTCTaGTCTTTGGCGAGCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: VKIVEGSQNHITRLLFRDPQWLF*SLASFM Trigger: CATGAAGCTCGCCAAAGACAAGAACAACCACTGTGG...GTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTATTTTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS TCA 90 bp | TGGCTCATGGTAAATACCTCCCTTATAGTTCTTGAAAGACTCATGTaGAGCATCAATTCCAGCAGTGATGGGCCCAATAGTTGCTACAGC | + |
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Preference number: 5 (lower is better) Translates to: WLMVNTSLIVLERLM*SINSSSDGPNSCYS Trigger: GCTGTAGCAACTATTGGGCCCATCACTGCTGGAATTGATGCTTCACATGAGTCTTTCAAGAACTATAAGGGAGGTATTTACCATGAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 90 bp | ACCAACCACGAGGACTCCATGAGTCACAGTATCACTGCTACAATTTaGCTCATGGTAAATACCTCCCTTATAGTTCTTGAAAGACTCATG | + |
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Preference number: 5 (lower is better) Translates to: TNHEDSMSHSITATI*LMVNTSLIVLERLM Trigger: CATGAGTCTTTCAAGAACTATAAGGGAGGTATTTACCATGAGCCAAATTGTAGCAGTGATACTGTGACTCATGGAGTCCTCGTGGTTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS-3UTR CAA 90 bp | ATAGTTGAAGGGTCCCAGAATCACATTACAAGGTTGCTCTTCAGGGACACAAGTACATACTGGAAGGCATaGTATGTATCACCACCAAGA | + |
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Preference number: 5 (lower is better) Translates to: IVEGSQNHITRLLFRDTSTYWKA*YVSPPR Trigger: TCTTGGTGGTGATACATACAATGCCTTCCAGTATGT...ACTTGTGTCCCTGAAGAGCAACCTTGTAATGTGATTCTGGGACCCTTCAACTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 90 bp | TTGGGGGAGGGACACAAATCCTGTGATTTCAGCCTTAGAATTCTTTaGATTATACCTGCATGGTCCATCTTTCCCTTCATATGGATATGT | + |
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Preference number: 5 (lower is better) Translates to: LGEGHKSCDFSLRIL*IIPAWSIFPFIWIC Trigger: ACATATCCATATGAAGGGAAAGATGGACCATGCAGGTATAATCCAAAGAATTCTAAGGCTGAAATCACAGGATTTGTGTCCCTCCCCCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS GCA 90 bp | TCTTCCTTCAGGCTATATGATTTGTTATACTTTATCTTCCAGTCTTaGCATTCAGCATCCAAACTTGAATCAAGTACTGGAACACCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SSFRLYDLLYFIFQS*HSASKLESSTGTPE Trigger: CTCAGGTGTTCCAGTACTTGATTCAAGTTTGGATGCTGAATGGCAAGACTGGAAGATAAAGTATAACAAATCATATAGCCTGAAGGAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 90 bp | CAAACTGAAATTTCAATCATCATTTTCCTGAATTCTTCATCAGTCTaGTCACCAAATTCATTCATTTTCATGGTGAAGCCATTCTTACCC | + |
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Preference number: 5 (lower is better) Translates to: QTEISIIIFLNSSSV*SPNSFIFMVKPFLP Trigger: GGGTAAGAATGGCTTCACCATGAAAATGAATGAATTTGGTGACCAGACTGATGAAGAATTCAGGAAAATGATGATTGAAATTTCAGTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CAA 90 bp | ACAGTCCACCAGGTTCTGCACACTCAGAGGGGTGAGTTTGCCCGTTaGCCAGATTGCCTGTGCTTCTATGGCACCAGTCACAGCAAATGC | + |
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Preference number: 6 (lower is better) Translates to: TVHQVLHTQRGEFAR*PDCLCFYGTSHSKC Trigger: GCATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAAACGGGCAAACTCACCCCTCTGAGTGTGCAGAACCTGGTGGACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS GCA 72 bp | CAGAGGGGTGAGTTTGCCCGTTTGCCAGATTGCCTGTaGTTCTATGGCACCAGTCACAGCAAATGCCCAACA | + |
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Preference number: 6 (lower is better) Translates to: QRGEFARLPDCL*FYGTSHSKCPT Trigger: TGTTGGGCATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAAACGGGCAAACTCACCCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS GCA 72 bp | CACACTCAGAGGGGTGAGTTTGCCCGTTTGCCAGATTaGCTGTGCTTCTATGGCACCAGTCACAGCAAATGC | + |
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Preference number: 6 (lower is better) Translates to: HTQRGEFARLPD*LCFYGTSHSKC Trigger: GCATTTGCTGTGACTGGTGCCATAGAAGCACAGGCAATCTGGCAAACGGGCAAACTCACCCCTCTGAGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 72 bp | TGGATTATACCTGCATGGTCCATCTTTCCCTTCATATaGATATGTTGCCTCAGACTCCAGACCACCATTGTG | + |
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Preference number: 6 (lower is better) Translates to: WIIPAWSIFPFI*ICCLRLQTTIV Trigger: CACAATGGTGGTCTGGAGTCTGAGGCAACATATCCATATGAAGGGAAAGATGGACCATGCAGGTATAATCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 72 bp | ATAGTTGCTACAGCAGCCATTAGGATATCCTCACTTTaGGGGAGGGACACAAATCCTGTGATTTCAGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: IVATAAIRISSL*GRDTNPVISAL Trigger: TAAGGCTGAAATCACAGGATTTGTGTCCCTCCCCCAAAGTGAGGATATCCTAATGGCTGCTGTAGCAACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS GCA 72 bp | AACCAACCACGAGGACTCCATGAGTCACAGTATCACTaGTACAATTTGGCTCATGGTAAATACCTCCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: NQPRGLHESQYH*YNLAHGKYLPY Trigger: ATAAGGGAGGTATTTACCATGAGCCAAATTGTAGCAGTGATACTGTGACTCATGGAGTCCTCGTGGTTGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CAA 72 bp | GGAGTCACATATCCTTTCTTTCGCCAATCGACAAATTaGGGGAGAATACTGCCAGCTTCCCGTTTCATGATA | + |
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Preference number: 6 (lower is better) Translates to: GVTYPFFRQSTN*GRILPASRFMI Trigger: TATCATGAAACGGGAAGCTGGCAGTATTCTCCCCAAATTTGTCGATTGGCGAAAGAAAGGATATGTGACTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 72 bp | GAGGACTCCATGAGTCACAGTATCACTGCTACAATTTaGCTCATGGTAAATACCTCCCTTATAGTTCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: EDSMSHSITATI*LMVNTSLIVLE Trigger: TTCAAGAACTATAAGGGAGGTATTTACCATGAGCCAAATTGTAGCAGTGATACTGTGACTCATGGAGTCCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CAA 90 bp | ATTTGTTATACTTTATCTTCCAGTCTTGCCATTCAGCATCCAAACTaGAATCAAGTACTGGAACACCTGAGGCCACTCCCAAATACAGGA | + |
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Preference number: 6 (lower is better) Translates to: ICYTLSSSLAIQHPN*NQVLEHLRPLPNTG Trigger: TCCTGTATTTGGGAGTGGCCTCAGGTGTTCCAGTACTTGATTCAAGTTTGGATGCTGAATGGCAAGACTGGAAGATAAAGTATAACAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 72 bp | GATTTCAGCCTTAGAATTCTTTGGATTATACCTGCATaGTCCATCTTTCCCTTCATATGGATATGTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: DFSLRILWIIPA*SIFPFIWICCL Trigger: GAGGCAACATATCCATATGAAGGGAAAGATGGACCATGCAGGTATAATCCAAAGAATTCTAAGGCTGAAATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS CCA 72 bp | GGACACAAATCCTGTGATTTCAGCCTTAGAATTCTTTaGATTATACCTGCATGGTCCATCTTTCCCTTCATA | + |
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Preference number: 6 (lower is better) Translates to: GHKSCDFSLRIL*IIPAWSIFPFI Trigger: TATGAAGGGAAAGATGGACCATGCAGGTATAATCCAAAGAATTCTAAGGCTGAAATCACAGGATTTGTGTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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| CDS TCA 72 bp | TGTGAGTCCAAACTGAAATTTCAATCATCATTTTCCTaGATTCTTCATCAGTCTGGTCACCAAATTCATTCA | + |
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Preference number: 6 (lower is better) Translates to: CESKLKFQSSFS*ILHQSGHQIHS Trigger: TGAATGAATTTGGTGACCAGACTGATGAAGAATTCAGGAAAATGATGATTGAAATTTCAGTTTGGACTCACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021889.6 |
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