Pregenerated sensors for CTSQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021439Ensembl transcript IDs: ENSMUST00000021888.9
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGCAGCCTCTATTGCCTTaGGGCCTAGAACAGTCCACT | + |
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Preference number: 4 (lower is better) Translates to: GTPLEIESHATCFLVNIRQPLLP*GLEQST Trigger: AGTGGACTGTTCTAGGCCTCAAGGCAATAGAGGCTG...CCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR TCA 90 bp | ACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGGTGTTCCCAAGCACAGGATaGCCAGGAAGAAAGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: TPLEIESHATCFLVNIRVFPSTG*PGRKQE Trigger: CTCCTGCTTTCTTCCTGGTCATCCTGTGCTTGGGAA...CACCCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR GCA 90 bp | GTTCATTGGAGTGGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTAATGGGGCCTTTAGTTaGTACAGCATCCATGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: VHWSGWHSSGNRVSCHMLNGAFS*YSIHED Trigger: GTCCTCATGGATGCTGTAGCAACTAAAGGCCCCATT...AAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCCACTCCAATGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CCA 90 bp | GGAGTGGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGATTCGACATCCAAACTaGGATCAAATGCTGAAACAC | + |
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Preference number: 4 (lower is better) Translates to: GVDGTPLEIESHATCFLVIRHPN*DQMLKH Trigger: GTGTTTCAGCATTTGATCCCAGTTTGGATGTCGAAT...CACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCCACTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CCA 90 bp | GGAGTGGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGACCCATTTAATCCCATaGTGTAGGTATTCTTCCCTA | + |
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Preference number: 4 (lower is better) Translates to: GVDGTPLEIESHATCFLVTHLIP*CRYSSL Trigger: TAGGGAAGAATACCTACACCATGGGATTAAATGGGT...CACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCCACTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR TCA 90 bp | GGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGGTTTGCCTGTTTTCTTaGACATTTGTCCTTCTATGG | + |
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Preference number: 4 (lower is better) Translates to: GTPLEIESHATCFLVNIRVCLFS*TFVLLW Trigger: CCATAGAAGGACAAATGTTCAAGAAAACAGGCAAAC...CCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CCA 90 bp | GGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGTCTTGTGTTGTCAACTaGCAATGTAGCACCAATTAC | + |
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Preference number: 4 (lower is better) Translates to: GTPLEIESHATCFLVNIRSCVVN*QCSTNY Trigger: GTAATTGGTGCTACATTGCCAGTTGACAACACAAGA...CCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CCA 90 bp | TGGAGTGGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTAGAACTTGTGCAATTTaGTTCATAATAAACACCTCC | + |
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Preference number: 4 (lower is better) Translates to: WSGWHSSGNRVSCHMLSCRTCAI*FIINTS Trigger: GGAGGTGTTTATTATGAACCAAATTGCACAAGTTCT...ACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCCACTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR GCA 90 bp | ACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGGTGATTTTCTTCCCATATTaGTCTTCTCAGTACTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: TPLEIESHATCFLVNIRVIFFPY*SSQYFF Trigger: GAAGAAGTACTGAGAAGAGCAATATGGGAAGAAAAT...CACCCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CCA 90 bp | GGGACTCAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCAACATTTGTCCTTCTATaGCACCAGTCACAGGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: GTQEFNIVNKVCSLEWMATFVLL*HQSQEK Trigger: CTTTTCCTGTGACTGGTGCCATAGAAGGACAAATGT...TGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTGAGTCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR GCA 90 bp | CAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCACTCCTCAAAAGGACTACCAAGTaGACGTTTCCAGAGACTTTT | + |
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Preference number: 4 (lower is better) Translates to: QEFNIVNKVCSLEWMALLKRTTK*TFPETF Trigger: AAAAGTCTCTGGAAACGTGCACTTGGTAGTCCTTTT...GAGGAGTGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CCA 90 bp | GGGACTCAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCAGCCAATCAACAAATTTaGGCAAAGCATCTTTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: GTQEFNIVNKVCSLEWMAANQQI*AKHLSN Trigger: ATTGGAAAGATGCTTTGCCCAAATTTGTTGATTGGC...TGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTGAGTCCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR GCA 90 bp | CAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCACTCCTCGCCAATTATCAAAACTaGATGATTCACAGAACTTGT | + |
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Preference number: 4 (lower is better) Translates to: QEFNIVNKVCSLEWMALLANYQN*MIHRTC Trigger: ACAAGTTCTGTGAATCATGCAGTTTTGATAATTGGC...GAGGAGTGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | TGGAGTGGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTCTTCATAAGGATAGGTaGCCTGAGCCTCCAGACCTC | + |
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Preference number: 5 (lower is better) Translates to: WSGWHSSGNRVSCHMLSCLHKDR*PEPPDL Trigger: GAGGTCTGGAGGCTCAGGCAACCTATCCTTATGAAG...ACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCCACTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS TCA 90 bp | TGGAATCCATTGTATGTATTACCCCAACGACAGCCTCTATTGCCTTaGGGCCTAGAACAGTCCACTAGGTTCTGTACACTCAGTGGGATC | + |
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Preference number: 5 (lower is better) Translates to: WNPLYVLPQRQPLLP*GLEQSTRFCTLSGI Trigger: GATCCCACTGAGTGTACAGAACCTAGTGGACTGTTCTAGGCCTCAAGGCAATAGAGGCTGTCGTTGGGGTAATACATACAATGGATTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | GGAGTGGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAGACTTTTTCTTGTGTaGTCAACTGGCAATGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: GVDGTPLEIESHATCFLVRLFLV*STGNVA Trigger: TGCTACATTGCCAGTTGACAACACAAGAAAAAGTCT...CACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCCACTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | GGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGCGCCAATCAACAAATTaGGGCAAAGCATCTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GTPLEIESHATCFLVNIRRQSTN*GKASFQ Trigger: TTGGAAAGATGCTTTGCCCAAATTTGTTGATTGGCG...CCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | GGGACTCAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCAACAGCCTCTATTGCCTaGAGGCCTAGAACAGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: GTQEFNIVNKVCSLEWMATASIA*RPRTVH Trigger: GTGGACTGTTCTAGGCCTCAAGGCAATAGAGGCTGT...TGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTGAGTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CCA 90 bp | ATTTTTCAAAGCTTCCCATCCACTCTTTCCATTCGACATCCAAACTaGGATCAAATGCTGAAACACCTGACAGGATTCCCAAGCACAGGA | + |
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Preference number: 5 (lower is better) Translates to: IFQSFPSTLSIRHPN*DQMLKHLTGFPSTG Trigger: TCCTGTGCTTGGGAATCCTGTCAGGTGTTTCAGCATTTGATCCCAGTTTGGATGTCGAATGGAAAGAGTGGATGGGAAGCTTTGAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | ACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGGTGTCCAGAGACTTTTTCTaGTGTTGTCAACTGGCAATG | + |
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Preference number: 5 (lower is better) Translates to: TPLEIESHATCFLVNIRVSRDFF*CCQLAM Trigger: CATTGCCAGTTGACAACACAAGAAAAAGTCTCTGGA...CACCCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS TCA 90 bp | TCATCATATATCCACTCAATCCCCATCGTCTACCCCAGCTGTTCTTaGTCAGCCAGTAATTATTGCCATCCGTTTCATTTCCCACATAAC | + |
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Preference number: 5 (lower is better) Translates to: SSYIHSIPIVYPSCS*SASNYCHPFHFPHN Trigger: GTTATGTGGGAAATGAAACGGATGGCAATAATTACTGGCTGATCAAGAACAGCTGGGGTAGACGATGGGGATTGAGTGGATATATGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | ACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGGGTGTGTTTTCTTGAACATTaGTCCTTCTATGGCACCAGT | + |
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Preference number: 5 (lower is better) Translates to: TPLEIESHATCFLVNIRVCFLEH*SFYGTS Trigger: ACTGGTGCCATAGAAGGACAAATGTTCAAGAAAACA...CACCCTGATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | GGATGGCACTCCTCTGGAAATAGAGTCTCATGCCACATGCTTTCTTGTGAACATCAGAACTTGTGCAATTaGGTTCATAATAAACACCTC | + |
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Preference number: 5 (lower is better) Translates to: GWHSSGNRVSCHMLSCEHQNLCN*VHNKHL Trigger: GAGGTGTTTATTATGAACCAAATTGCACAAGTTCTG...ATGTTCACAAGAAAGCATGTGGCATGAGACTCTATTTCCAGAGGAGTGCCATCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | GGGACTCAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCACTCAGTGGGATCAGTTaGCCTGTTTTCTTGAACATT | + |
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Preference number: 5 (lower is better) Translates to: GTQEFNIVNKVCSLEWMALSGIS*PVFLNI Trigger: AATGTTCAAGAAAACAGGCAAACTGATCCCACTGAG...TGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTGAGTCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS GCA 90 bp | CAAAGCATCTTTCCAATACCAAGATTTAGGAAAAGGACTACCAAGTaGACGTTTCCAGAGACTTTTTCTTGTGTTGTCAACTGGCAATGT | + |
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Preference number: 5 (lower is better) Translates to: QSIFPIPRFRKRTTK*TFPETFSCVVNWQC Trigger: ACATTGCCAGTTGACAACACAAGAAAAAGTCTCTGGAAACGTGCACTTGGTAGTCCTTTTCCTAAATCTTGGTATTGGAAAGATGCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS-3UTR CAA 90 bp | GGGACTCAAGAGTTTAACATAGTCAATAAAGTCTGTTCATTGGAGTGGATGGCACATTTTCTTCCCATATaGCTCTTCTCAGTACTTCTT | + |
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Preference number: 5 (lower is better) Translates to: GTQEFNIVNKVCSLEWMAHFLPI*LFSVLL Trigger: AAGAAGTACTGAGAAGAGCAATATGGGAAGAAAATG...TGCCATCCACTCCAATGAACAGACTTTATTGACTATGTTAAACTCTTGAGTCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CCA 72 bp | AGCTTCCCATCCACTCTTTCCATTCGACATCCAAACTaGGATCAAATGCTGAAACACCTGACAGGATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: SFPSTLSIRHPN*DQMLKHLTGFP Trigger: TGGGAATCCTGTCAGGTGTTTCAGCATTTGATCCCAGTTTGGATGTCGAATGGAAAGAGTGGATGGGAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS TCA 72 bp | ATCCACTCAATCCCCATCGTCTACCCCAGCTGTTCTTaGTCAGCCAGTAATTATTGCCATCCGTTTCATTTC | + |
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Preference number: 6 (lower is better) Translates to: IHSIPIVYPSCS*SASNYCHPFHF Trigger: GAAATGAAACGGATGGCAATAATTACTGGCTGATCAAGAACAGCTGGGGTAGACGATGGGGATTGAGTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS GCA 72 bp | GACAACATGAATTCCAGTAGCAATGGGGCCTTTAGTTaGTACAGCATCCATGAGGACATCTTCACTTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: DNMNSSSNGAFS*YSIHEDIFTFW Trigger: CCAGAAAGTGAAGATGTCCTCATGGATGCTGTAGCAACTAAAGGCCCCATTGCTACTGGAATTCATGTTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CCA 72 bp | CTTCATCAGTCATGTCAGCAAACCCATTTAATCCCATaGTGTAGGTATTCTTCCCTAGGGAATTCTCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LHQSCQQTHLIP*CRYSSLGNSPC Trigger: ACAGGGAGAATTCCCTAGGGAAGAATACCTACACCATGGGATTAAATGGGTTTGCTGACATGACTGATGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CAA 72 bp | GCCAATGAAGCAATTGCACAGTGGTTGTTCCTGTCTTaGGCAATCATCATATATCCACTCAATCCCCATCGT | + |
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Preference number: 6 (lower is better) Translates to: ANEAIAQWLFLS*AIIIYPLNPHR Trigger: ACGATGGGGATTGAGTGGATATATGATGATTGCCAAAGACAGGAACAACCACTGTGCAATTGCTTCATTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CAA 72 bp | CTACCAAGTGCACGTTTCCAGAGACTTTTTCTTGTGTaGTCAACTGGCAATGTAGCACCAATTACAATGTTC | + |
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Preference number: 6 (lower is better) Translates to: LPSARFQRLFLV*STGNVAPITMF Trigger: GAACATTGTAATTGGTGCTACATTGCCAGTTGACAACACAAGAAAAAGTCTCTGGAAACGTGCACTTGGTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CAA 90 bp | GGAAAAGGACTACCAAGTGCACGTTTCCAGAGACTTTTTCTTGTGTaGTCAACTGGCAATGTAGCACCAATTACAATGTTCATGAATTCT | + |
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Preference number: 6 (lower is better) Translates to: GKGLPSARFQRLFLV*STGNVAPITMFMNS Trigger: AGAATTCATGAACATTGTAATTGGTGCTACATTGCCAGTTGACAACACAAGAAAAAGTCTCTGGAAACGTGCACTTGGTAGTCCTTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS GCA 72 bp | TTCATTTCCCACATAACCATAGCCAATTATCAAAACTaGATGATTCACAGAACTTGTGCAATTTGGTTCATA | + |
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Preference number: 6 (lower is better) Translates to: FISHITIANYQN*MIHRTCAIWFI Trigger: TATGAACCAAATTGCACAAGTTCTGTGAATCATGCAGTTTTGATAATTGGCTATGGTTATGTGGGAAATGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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| CDS CAA 72 bp | CATAGCCAATTATCAAAACTGCATGATTCACAGAACTaGTGCAATTTGGTTCATAATAAACACCTCCATCAT | + |
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Preference number: 6 (lower is better) Translates to: HSQLSKLHDSQN*CNLVHNKHLHH Trigger: ATGATGGAGGTGTTTATTATGAACCAAATTGCACAAGTTCTGTGAATCATGCAGTTTTGATAATTGGCTATG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021888.9 |
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