Pregenerated sensors for CTSO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028015Ensembl transcript IDs: ENSMUST00000029649.3
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGATGGAGACAGATGTAGGAATGGGTTCTAAGGAGGAGACAACTTaGTTGTCTAGAATTCCTTTTGACTCTATGGCCTGCTTATACAAT | + |
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Preference number: 1 (lower is better) Translates to: RMETDVGMGSKEETT*LSRIPFDSMACLYN Trigger: ATTGTATAAGCAGGCCATAGAGTCAAAAGGAATTCTAGACAATCAAGTTGTCTCCTCCTTAGAACCCATTCCTACATCTGTCTCCATCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 90 bp | ATTCAAAACCTTAAGAAATGTCTTCTGCCGTTTCTTTACCCTCCATaGTCTGCACATTCAAGATTGCTTCTCACTGGTACAGACAAAAGA | + |
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Preference number: 1 (lower is better) Translates to: IQNLKKCLLPFLYPP*SAHSRLLLTGTDKR Trigger: TCTTTTGTCTGTACCAGTGAGAAGCAATCTTGAATGTGCAGATCATGGAGGGTAAAGAAACGGCAGAAGACATTTCTTAAGGTTTTGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 90 bp | TCTTGGTGCACATTTGTTCTACTGTCTAGAGTAAGTTCCATTTGCTaGAATAAAACAACTGATATTCCAAATCTGTTCACATGGAACAGA | + |
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Preference number: 1 (lower is better) Translates to: SWCTFVLLSRVSSIC*NKTTDIPNLFTWNR Trigger: TCTGTTCCATGTGAACAGATTTGGAATATCAGTTGTTTTATTTCAGCAAATGGAACTTACTCTAGACAGTAGAACAAATGTGCACCAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CAA 90 bp | GCCTCTGCCTCCCAAGTGATGGGATATTTCAAAGGCACTGCAAAGTaGACCCATTTAACAGTTGCAATGGGGACCTTGTCAAATCACTTT | + |
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Preference number: 2 (lower is better) Translates to: ASASQVMGYFKGTAK*THLTVAMGTLSNHF Trigger: AAAGTGATTTGACAAGGTCCCCATTGCAACTGTTAAATGGGTCAACTTTGCAGTGCCTTTGAAATATCCCATCACTTGGGAGGCAGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR TCA 90 bp | GTTGGTGATCTTCAGTATGAATGCTGTGTAGTAAGGAACACATTCGGCTGCTCTGGAGAAGAGGACCACTaGGCATTGACAACAGATATG | + |
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Preference number: 2 (lower is better) Translates to: VGDLQYECCVVRNTFGCSGEEDH*ALTTDM Trigger: CATATCTGTTGTCAATGCTCAGTGGTCCTCTTCTCC...AGAGCAGCCGAATGTGTTCCTTACTACACAGCATTCATACTGAAGATCACCAAC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CCA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATCCATCTGTTCTGCTCTaGAGATTACTGTTCAGGACC | + |
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Preference number: 2 (lower is better) Translates to: YASSLIYRGYKGRERPLHPSVLL*RLLFRT Trigger: GGTCCTGAACAGTAATCTCCAGAGCAGAACAGATGG...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR TCA 90 bp | CATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTGGACAATACTTCCCTGGGGATTTCCTATaGAGTTTGGCTGTCCATGTC | + |
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Preference number: 2 (lower is better) Translates to: HRTCTIKDKRGNKCGQYFPGDFL*SLAVHV Trigger: GACATGGACAGCCAAACTTCATAGGAAATCCCCAGG...GAAGTATTGTCCACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR TCA 90 bp | CTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAAAAGGTAAGGAGGAGGAGAATACTATGTaGCTTCTGATCCCACCAAAC | + |
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Preference number: 2 (lower is better) Translates to: LWPAYTIAMLLTERKGKEEENTM*LLIPPN Trigger: GTTTGGTGGGATCAGAAGTCACATAGTATTCTCCTC...CTCCTTACCTTTTCTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR TCA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATATACTATGTGACTTCTaGTCCCACCAAACTCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: YASSLIYRGYKGRERPLHILCDF*SHQTLR Trigger: TCTGAGAGTTTGGTGGGATCAGAAGTCACATAGTAT...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR TCA 90 bp | CTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAAAAGGTAAGGAGGAGAGTTCTTGTAGATaGGGTAATCTAAGACTGGTG | + |
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Preference number: 2 (lower is better) Translates to: LWPAYTIAMLLTERKGKEESSCR*GNLRLV Trigger: CACCAGTCTTAGATTACCTCATCTACAAGAACTCTC...CTCCTTACCTTTTCTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | GCTGAAATAAAACAACTGATATTCCAAATCTGTTCACATGGAACAGAAGGCCATCCAAACTCTCAGAGGTaGACACTATCCCACAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: AEIKQLIFQICSHGTEGHPNSQR*TLSHRV Trigger: GACTCTGTGGGATAGTGTGCACCTCTGAGAGTTTGG...ATGGCCTTCTGTTCCATGTGAACAGATTTGGAATATCAGTTGTTTTATTTCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | GGATTCTCTTTGTGCATCGTTGTTTCATCTTGGTGCACATTTGTTCTACTGTCTAGCAAAAGTCCCAACTaGTTCCAGGAGGAGAATACT | + |
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Preference number: 2 (lower is better) Translates to: GFSLCIVVSSWCTFVLLSSKSPN*FQEENT Trigger: AGTATTCTCCTCCTGGAAGCAGTTGGGACTTTTGCT...AGACAGTAGAACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CCA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATGATCAGTCAACGTCCTaGGGATTTCCTATGAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: YASSLIYRGYKGRERPLHDQSTS*GFPMKF Trigger: AAACTTCATAGGAAATCCCCAGGACGTTGACTGATC...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CAA 90 bp | GAATGGGTTCTAAGGAGGAGACAACTTGATTGTCTAGAATTCCTTTaGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAA | + |
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Preference number: 2 (lower is better) Translates to: EWVLRRRQLDCLEFL*TLWPAYTIAMLLTE Trigger: TTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAATTCTAGACAATCAAGTTGTCTCCTCCTTAGAACCCATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATGGTTGCTTTACAAAATaGCAGTTTGCTCTTAGAACC | + |
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Preference number: 2 (lower is better) Translates to: YASSLIYRGYKGRERPLHGCFTK*QFALRT Trigger: GGTTCTAAGAGCAAACTGGCATTTTGTAAAGCAACC...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CCA 90 bp | GTTGGTGATCTTCAGTATGAATGCTGTGTAGTAAGGAACACATTCGGCTGCTCTAAGATTGCTTCTCACTaGTACAGACAAAAGAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: VGDLQYECCVVRNTFGCSKIASH*YRQKSK Trigger: CTTACTCTTTTGTCTGTACCAGTGAGAAGCAATCTT...AGAGCAGCCGAATGTGTTCCTTACTACACAGCATTCATACTGAAGATCACCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR TCA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATAAGGAGGAGACAACTTaGTTGTCTAGAATTCCTTTT | + |
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Preference number: 2 (lower is better) Translates to: YASSLIYRGYKGRERPLHKEETT*LSRIPF Trigger: AAAAGGAATTCTAGACAATCAAGTTGTCTCCTCCTT...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | CTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAAAAGGTAAGGAGGTTGTTTCATCTTGGTaGACATTTGTTCTACTGTCT | + |
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Preference number: 2 (lower is better) Translates to: LWPAYTIAMLLTERKGKEVVSSW*TFVLLS Trigger: AGACAGTAGAACAAATGTGCACCAAGATGAAACAAC...CTCCTTACCTTTTCTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | TTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAAAAGGATGGGATTCTCTTTGTaGATCGTTGTTTCATCTTGG | + |
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Preference number: 2 (lower is better) Translates to: FDSMACLYNSNAADRKKRMGFSL*IVVSSW Trigger: CCAAGATGAAACAACGATGCACAAAGAGAATCCCAT...CCTTTTCTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | ATTCCTTTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGTTACCCTCCATGATCTaGACATTCAAGATTGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: IPFDSMACLYNSNAADRKLPSMI*TFKIAS Trigger: AGAAGCAATCTTGAATGTGCAGATCATGGAGGGTAA...CTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATTTAAGAAATGTCTTCTaGCGTTTCTTTACCCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: YASSLIYRGYKGRERPLHLRNVF*RFFTLH Trigger: ATGGAGGGTAAAGAAACGGCAGAAGACATTTCTTAA...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CCA 90 bp | ATGGAACAGAAGGCCATTCTAATTATGAGGCACACATTGCATCAGGTTGAGAGTATTTCCTATGAAGTTTaGCTGTCCATGTCTTTGCAA | + |
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Preference number: 2 (lower is better) Translates to: MEQKAILIMRHTLHQVESISYEV*LSMSLQ Trigger: TTGCAAAGACATGGACAGCCAAACTTCATAGGAAAT...ACTCTCAACCTGATGCAATGTGTGCCTCATAATTAGAATGGCCTTCTGTTCCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR GCA 90 bp | TTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAAAAGGGATCACACTATGAAGTaGATCATTTTCGTAGTTGTC | + |
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Preference number: 2 (lower is better) Translates to: FDSMACLYNSNAADRKKRDHTMK*IIFVVV Trigger: GACAACTACGAAAATGATGCACTTCATAGTGTGATC...CCTTTTCTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CCA 90 bp | ATTCCTTTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGTTATTTAACTCCAGTTaGATTGTCTCTCTGAAGATG | + |
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Preference number: 2 (lower is better) Translates to: IPFDSMACLYNSNAADRKLFNSS*IVSLKM Trigger: CATCTTCAGAGAGACAATCCAACTGGAGTTAAATAA...CTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CAA 90 bp | ATGAAGGACATAAACAAGGAGCAATGTGAGCCTGTGTCAGAGATTTaGTTTTTAAGTAAGAGATTGGGTAACAGAAATGGAATACAACCA | + |
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Preference number: 2 (lower is better) Translates to: MKDINKEQCEPVSEI*FLSKRLGNRNGIQP Trigger: TGGTTGTATTCCATTTCTGTTACCCAATCTCTTACTTAAAAACAAAATCTCTGACACAGGCTCACATTGCTCCTTGTTTATGTCCTTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CCA 72 bp | CTGTGTAGTAAGGAACACATTCGGCTGCTCTGTCTCTaGTTTTCTGGGGCAGGAGCACCCATGAGCTGGTGT | + |
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Preference number: 3 (lower is better) Translates to: LCSKEHIRLLCL*FSGAGAPMSWC Trigger: ACACCAGCTCATGGGTGCTCCTGCCCCAGAAAACCAGAGACAGAGCAGCCGAATGTGTTCCTTACTACACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | TGCTCTGTCTCTGGTTTTCTGGGGCAGGAGCACCCATaGGCTGGTGTATATGCGTCATCACTTATTTACAGG | + |
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Preference number: 3 (lower is better) Translates to: CSVSGFLGQEHP*AGVYASSLIYR Trigger: CCTGTAAATAAGTGATGACGCATATACACCAGCTCATGGGTGCTCCTGCCCCAGAAAACCAGAGACAGAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR GCA 72 bp | CTCTGCCTCCCAAGTGATGGGATATTTCAAAGGCACTaGAAAGTTGACCCATTTAACAGTTGCAATGGGGAC | + |
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Preference number: 3 (lower is better) Translates to: LCLPSDGIFQRH*KVDPFNSCNGD Trigger: GTCCCCATTGCAACTGTTAAATGGGTCAACTTTGCAGTGCCTTTGAAATATCCCATCACTTGGGAGGCAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR GCA 72 bp | TCACTTTCAGGACCTGTTGGTGATCTTCAGTATGAATaGTGTGTAGTAAGGAACACATTCGGCTGCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: SLSGPVGDLQYE*CVVRNTFGCSV Trigger: GACAGAGCAGCCGAATGTGTTCCTTACTACACAGCATTCATACTGAAGATCACCAACAGGTCCTGAAAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | ACAGATGTAGGAATGGGTTCTAAGGAGGAGACAACTTaGTTGTCTAGAATTCCTTTTGACTCTATGGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: TDVGMGSKEETT*LSRIPFDSMAC Trigger: GCAGGCCATAGAGTCAAAAGGAATTCTAGACAATCAAGTTGTCTCCTCCTTAGAACCCATTCCTACATCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR GCA 72 bp | GAAATGTCTTCTGCCGTTTCTTTACCCTCCATGATCTaGACATTCAAGATTGCTTCTCACTGGTACAGACAA | + |
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Preference number: 3 (lower is better) Translates to: EMSSAVSLPSMI*TFKIASHWYRQ Trigger: TTGTCTGTACCAGTGAGAAGCAATCTTGAATGTGCAGATCATGGAGGGTAAAGAAACGGCAGAAGACATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR GCA 72 bp | TTTCAAAGGCACTGCAAAGTTGACCCATTTAACAGTTaGAATGGGGACCTTGTCAAATCACTTTCAGGACCT | + |
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Preference number: 3 (lower is better) Translates to: FQRHCKVDPFNS*NGDLVKSLSGP Trigger: AGGTCCTGAAAGTGATTTGACAAGGTCCCCATTGCAACTGTTAAATGGGTCAACTTTGCAGTGCCTTTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | CTTAAGAAATGTCTTCTGCCGTTTCTTTACCCTCCATaGTCTGCACATTCAAGATTGCTTCTCACTGGTACA | + |
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Preference number: 3 (lower is better) Translates to: LKKCLLPFLYPP*SAHSRLLLTGT Trigger: TGTACCAGTGAGAAGCAATCTTGAATGTGCAGATCATGGAGGGTAAAGAAACGGCAGAAGACATTTCTTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CAA 90 bp | GGATTCTCTTTGTGCATCGTTGTTTCATCTTGGTGCACATTTGTTCTACTGTCTGAGTTGAGTATGATGTaGGATCACACTATGAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: GFSLCIVVSSWCTFVLLSELSMM*DHTMKC Trigger: GCACTTCATAGTGTGATCCAACATCATACTCAACTC...AGACAGTAGAACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR-3UTR CAA 90 bp | CATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTGGACAATACTTCTCTCTTTGTGCATCGTaGTTTCATCTTGGTGCACAT | + |
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Preference number: 3 (lower is better) Translates to: HRTCTIKDKRGNKCGQYFSLCAS*FHLGAH Trigger: ATGTGCACCAAGATGAAACAACGATGCACAAAGAGA...GAAGTATTGTCCACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | AGGCACACATTGCATCAGGTTGAGAGTTCTTGTAGATaGGGTAATCTAAGACTGGTGATTATAAGTCACAAG | + |
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Preference number: 3 (lower is better) Translates to: RHTLHQVESSCR*GNLRLVIISHK Trigger: CTTGTGACTTATAATCACCAGTCTTAGATTACCTCATCTACAAGAACTCTCAACCTGATGCAATGTGTGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR GCA 72 bp | AGTTGGATTGTCTCTCTGAAGATGGGATTCTCTTTGTaGATCGTTGTTTCATCTTGGTGCACATTTGTTCTA | + |
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Preference number: 3 (lower is better) Translates to: SWIVSLKMGFSL*IVVSSWCTFVL Trigger: TAGAACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCCCATCTTCAGAGAGACAATCCAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CCA 72 bp | AAGATGGGATTCTCTTTGTGCATCGTTGTTTCATCTTaGTGCACATTTGTTCTACTGTCTAGAGTAAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: KMGFSLCIVVSS*CTFVLLSRVSS Trigger: GGAACTTACTCTAGACAGTAGAACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCCCATCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | TCACGTGTTTATTTAACTCCAGTTGGATTGTCTCTCTaGAGATGGGATTCTCTTTGTGCATCGTTGTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: SRVYLTPVGLSL*RWDSLCASLFH Trigger: ATGAAACAACGATGCACAAAGAGAATCCCATCTTCAGAGAGACAATCCAACTGGAGTTAAATAAACACGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR GCA 72 bp | ATGGGATTCTCTTTGTGCATCGTTGTTTCATCTTGGTaGACATTTGTTCTACTGTCTAGAGTAAGTTCCATT | + |
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Preference number: 3 (lower is better) Translates to: MGFSLCIVVSSW*TFVLLSRVSSI Trigger: AATGGAACTTACTCTAGACAGTAGAACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCCCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CCA 72 bp | AGACAACTTGATTGTCTAGAATTCCTTTTGACTCTATaGCCTGCTTATACAATAGCAATGCTGCTGACAGAA | + |
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Preference number: 3 (lower is better) Translates to: RQLDCLEFLLTL*PAYTIAMLLTE Trigger: TTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAATTCTAGACAATCAAGTTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | GGAAAAACAAAGGCTCATCATATCTTCAATTCACCCTaGCCAAAATACTTCCTTAATGTAGACAGCCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: GKTKAHHIFNSP*PKYFLNVDSQK Trigger: TTTCTGGCTGTCTACATTAAGGAAGTATTTTGGTCAGGGTGAATTGAAGATATGATGAGCCTTTGTTTTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR TCA 72 bp | CACTGGTACAGACAAAAGAGTAAGGAGCTTTGTTATTaGTGCTGGTATTCTAATGAAGGACATAAACAAGGA | + |
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Preference number: 3 (lower is better) Translates to: HWYRQKSKELCY*CWYSNEGHKQG Trigger: TCCTTGTTTATGTCCTTCATTAGAATACCAGCATCAATAACAAAGCTCCTTACTCTTTTGTCTGTACCAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | GTTGGTGATCTTCAGTATGAATGCTGTGTAGTAAGGAACACATTCGGCTGCTCTGCGGCGGCCTCCCGCTaGTGGCTCCAAGACCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: VGDLQYECCVVRNTFGCSAAASR*WLQDQV Trigger: GACCTGGTCTTGGAGCCACCAGCGGGAGGCCGCCGC...AGAGCAGCCGAATGTGTTCCTTACTACACAGCATTCATACTGAAGATCACCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR TCA 90 bp | ATTCCTTTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGTGGCACTCACCACGCTaGAGGCCCAGCATCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: IPFDSMACLYNSNAADRKWHSPR*RPSILH Trigger: GTGGAGGATGCTGGGCCTTCAGCGTGGTGAGTGCCA...CTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | AATGTCTTCTGCCGTTTCTTTACCCTCCATGATCTGCACATTCAAGATTGCTTCTCTCTGTCCTTCTGCTaGGTATCTGGGAGCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: NVFCRFFTLHDLHIQDCFSLSFC*VSGSPG Trigger: GCCTGGGCTCCCAGATACCCAGCAGAAGGACAGAGA...GAAGCAATCTTGAATGTGCAGATCATGGAGGGTAAAGAAACGGCAGAAGACATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | GTTGGTGATCTTCAGTATGAATGCTGTGTAGTAAGGAACACATTCGGCTGCTCTAGGACAGAAGTGCTCTaGCCATTTCATCCTCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: VGDLQYECCVVRNTFGCSRTEVL*PFHPLG Trigger: GCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCT...AGAGCAGCCGAATGTGTTCCTTACTACACAGCATTCATACTGAAGATCACCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR TCA 90 bp | GTTGGTGATCTTCAGTATGAATGCTGTGTAGTAAGGAACACATTCGGCTGCTCTATGCAGAAAAATCCTTaGCTGAAACTCCAGCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: VGDLQYECCVVRNTFGCSMQKNP*LKLQLV Trigger: CACAAGCTGGAGTTTCAGTCAAGGATTTTTCTGCAT...AGAGCAGCCGAATGTGTTCCTTACTACACAGCATTCATACTGAAGATCACCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CAA 72 bp | CCCTGGAAGTGGCATAGTGTACTCCTTATCACACTGTaGTCACGTGTTTATTTAACTCCAGTTGGATTGTCT | + |
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Preference number: 4 (lower is better) Translates to: PWKWHSVLLITL*SRVYLTPVGLS Trigger: AGACAATCCAACTGGAGTTAAATAAACACGTGACAACAGTGTGATAAGGAGTACACTATGCCACTTCCAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR GCA 90 bp | CCACCAGGAAACCATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTACAGGATTCACAACATaGTTGTCCCTCCAGTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: PPGNHRTCTIKDKRGNKCTGFTT*LSLQSN Trigger: ATTTGACTGGAGGGACAAGCATGTTGTGAATCCTGT...ACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATGGTTTCCTGGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR GCA 90 bp | ATTCCTTTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAGCAGCTACAGAGTCTaGAATGCCACAAACATTACC | + |
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Preference number: 4 (lower is better) Translates to: IPFDSMACLYNSNAADRKSSYRV*NATNIT Trigger: GGTAATGTTTGTGGCATTGCAGACTCTGTAGCTGCT...CTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | ATGGAACAGAAGGCCATTCTAATTATGAGGCACACATTGCATCAGGTTGAGAGTCTCCATAGAAGGCAGTaGAGTTTTCATGAGGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: MEQKAILIMRHTLHQVESLHRRQ*SFHEEK Trigger: CTTTTCCTCATGAAAACTCCACTGCCTTCTATGGAG...ACTCTCAACCTGATGCAATGTGTGCCTCATAATTAGAATGGCCTTCTGTTCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | AGTATGATGTTGGATCACACTATGAAGTGCATCATTTTCGTAGTTGTCTCATGGCCTCCACACATCTCCTaGTTCCTTACAGGATTCACA | + |
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Preference number: 4 (lower is better) Translates to: SMMLDHTMKCIIFVVVSWPPHIS*FLTGFT Trigger: TGTGAATCCTGTAAGGAACCAGGAGATGTGTGGAGG...CCATGAGACAACTACGAAAATGATGCACTTCATAGTGTGATCCAACATCATACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CAA 72 bp | TCCAGTTGGATTGTCTCTCTGAAGATGGGATTCTCTTaGTGCATCGTTGTTTCATCTTGGTGCACATTTGTT | + |
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Preference number: 4 (lower is better) Translates to: SSWIVSLKMGFS*CIVVSSWCTFV Trigger: AACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCCCATCTTCAGAGAGACAATCCAACTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR TCA 90 bp | GGATTCTCTTTGTGCATCGTTGTTTCATCTTGGTGCACATTTGTTCTACTGTCTCATCCTCTTGGCCCCTaGAGTTATATGCAGAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: GFSLCIVVSSWCTFVLLSHPLGP*SYMQKN Trigger: ATTTTTCTGCATATAACTTCAGGGGCCAAGAGGATG...AGACAGTAGAACAAATGTGCACCAAGATGAAACAACGATGCACAAAGAGAATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | ATATTCCAAATCTGTTCACATGGAACAGAAGGCCATTCTAATTATGAGGCACACGCCATTTCATCCTCTTaGCCCCTGAAGTTATATGCA | + |
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Preference number: 4 (lower is better) Translates to: IFQICSHGTEGHSNYEAHAISSS*PLKLYA Trigger: TGCATATAACTTCAGGGGCCAAGAGGATGAAATGGC...GTGTGCCTCATAATTAGAATGGCCTTCTGTTCCATGTGAACAGATTTGGAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR TCA 90 bp | TTTGACTCTATGGCCTGCTTATACAATAGCAATGCTGCTGACAGAAAGAAAAGGGCAGTGGAGTTTTCATaGGGAAAAGAGTTCAAGTAT | + |
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Preference number: 4 (lower is better) Translates to: FDSMACLYNSNAADRKKRAVEFS*GKEFKY Trigger: ATACTTGAACTCTTTTCCTCATGAAAACTCCACTGC...CCTTTTCTTTCTGTCAGCAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | CATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTGGACAATACTTCCCAGTCAAATCTCAATaGCAAAGACACATTGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: HRTCTIKDKRGNKCGQYFPVKSQ*QRHIGD Trigger: ATCCCCAATGTGTCTTTGCCATTGAGATTTGACTGG...GAAGTATTGTCCACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CCA 90 bp | CATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTGGACAATACTTCTCGCACCATCCAATATaGTGTATTTCCTGTCCTATC | + |
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Preference number: 4 (lower is better) Translates to: HRTCTIKDKRGNKCGQYFSHHPI*CISCPI Trigger: GATAGGACAGGAAATACACCATATTGGATGGTGCGA...GAAGTATTGTCCACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| 3UTR CAA 72 bp | CTAAGGAGGAGACAACTTGATTGTCTAGAATTCCTTTaGACTCTATGGCCTGCTTATACAATAGCAATGCTG | + |
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Preference number: 4 (lower is better) Translates to: LRRRQLDCLEFL*TLWPAYTIAML Trigger: CAGCATTGCTATTGTATAAGCAGGCCATAGAGTCAAAAGGAATTCTAGACAATCAAGTTGTCTCCTCCTTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 90 bp | CTGCACGCTCAGGTAATCCAGAGATTTCCCTTGGATTGCACGAGCTaGCTCTATGGCACTCACCACGCTGAAGGCCCAGCATCCTCCACA | + |
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Preference number: 5 (lower is better) Translates to: LHAQVIQRFPLDCTS*LYGTHHAEGPASST Trigger: TGTGGAGGATGCTGGGCCTTCAGCGTGGTGAGTGCCATAGAGTCAGCTCGTGCAATCCAAGGGAAATCTCTGGATTACCTGAGCGTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 90 bp | ATTTCCCTTGGATTGCACGAGCTGACTCTATGGCACTCACCACGCTaGAGGCCCAGCATCCTCCACACATCTCCTGGTTCCTTACAGGAT | + |
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Preference number: 5 (lower is better) Translates to: ISLGLHELTLWHSPR*RPSILHTSPGSLQD Trigger: ATCCTGTAAGGAACCAGGAGATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGAGTGCCATAGAGTCAGCTCGTGCAATCCAAGGGAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS GCA 90 bp | GAACGGCATGGTTGGCCTCCCCACTGGAGCAGTGATGTTGGATTATaGCCCCCAGATAATCCTGCCAGCTCATCGCATCAACTATCACAA | + |
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Preference number: 5 (lower is better) Translates to: ERHGWPPHWSSDVGL*PPDNPASSSHQLSQ Trigger: TTGTGATAGTTGATGCGATGAGCTGGCAGGATTATCTGGGGGGCATAATCCAACATCACTGCTCCAGTGGGGAGGCCAACCATGCCGTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS GCA 90 bp | GCTCATCGCATCAACTATCACAACCAAAGGGCCGAAGGACAGAAGTaGTCTGGCCATTTCATCCTCTTGGCCCCTGAAGTTATATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: AHRINYHNQRAEGQK*SGHFILLAPEVICR Trigger: TCTGCATATAACTTCAGGGGCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCTTCGGCCCTTTGGTTGTGATAGTTGATGCGATGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CCA 90 bp | TTCTACTCCCCAGGAGGATCCCCAGGAGTTTCGCACCATCCAATATaGTGTATTTCCTGTCCTATCAAAGCCTGTGATGAGAACGGCATG | + |
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Preference number: 5 (lower is better) Translates to: FYSPGGSPGVSHHPI*CISCPIKACDENGM Trigger: CATGCCGTTCTCATCACAGGCTTTGATAGGACAGGAAATACACCATATTGGATGGTGCGAAACTCCTGGGGATCCTCCTGGGGAGTAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS GCA 90 bp | CAGCATCCTCCACACATCTCCTGGTTCCTTACAGGATTCACAACATaGTTGTCCCTCCAGTCAAATCTCAATGGCAAAGACACATTGGGG | + |
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Preference number: 5 (lower is better) Translates to: QHPPHISWFLTGFTT*LSLQSNLNGKDTLG Trigger: CCCCAATGTGTCTTTGCCATTGAGATTTGACTGGAGGGACAAGCATGTTGTGAATCCTGTAAGGAACCAGGAGATGTGTGGAGGATGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 90 bp | CAGCTTGTGATTGAGGAAAGTGGCGACACTGGCCATTTACTGCCTTaGATGGGTACTGTGAATCTGCCACCAACTTCAACTGTGTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: QLVIEESGDTGHLLP*MGTVNLPPTSTVSH Trigger: ATGAGACACAGTTGAAGTTGGTGGCAGATTCACAGTACCCATTCAAGGCAGTAAATGGCCAGTGTCGCCACTTTCCTCAATCACAAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CCA 90 bp | CCTTACAGGATTCACAACATGCTTGTCCCTCCAGTCAAATCTCAATaGCAAAGACACATTGGGGATAGGTCTCTGTCCTTCTGCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: PYRIHNMLVPPVKSQ*QRHIGDRSLSFCWV Trigger: TACCCAGCAGAAGGACAGAGACCTATCCCCAATGTGTCTTTGCCATTGAGATTTGACTGGAGGGACAAGCATGTTGTGAATCCTGTAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CCA 90 bp | ACCAAAGGGCCGAAGGACAGAAGTGCTCTGGCCATTTCATCCTCTTaGCCCCTGAAGTTATATGCAGAAAAATCCTTGACTGAAACTCCA | + |
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Preference number: 5 (lower is better) Translates to: TKGPKDRSALAISSS*PLKLYAEKSLTETP Trigger: TGGAGTTTCAGTCAAGGATTTTTCTGCATATAACTTCAGGGGCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCTTCGGCCCTTTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CAA 90 bp | TATGCGTCATCACTTATTTACAGGGGATACAAAGGTAGAGAGAGACCTCTCCATGGCCATTTCATCCTCTaGGCCCCTGAAGTTATATGC | + |
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Preference number: 5 (lower is better) Translates to: YASSLIYRGYKGRERPLHGHFIL*APEVIC Trigger: GCATATAACTTCAGGGGCCAAGAGGATGAAATGGCC...ATGGAGAGGTCTCTCTCTACCTTTGTATCCCCTGTAAATAAGTGATGACGCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CAA 90 bp | CCACCAGGAAACCATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTAATGGCAAAGACACATaGGGGATAGGTCTCTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: PPGNHRTCTIKDKRGNKCNGKDT*GIGLCP Trigger: AGGACAGAGACCTATCCCCAATGTGTCTTTGCCATT...ACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATGGTTTCCTGGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 90 bp | AAGTTATATGCAGAAAAATCCTTGACTGAAACTCCAGCTTGTGATTaGGGAAAGTGGCGACACTGGCCATTTACTGCCTTGAATGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: KLYAEKSLTETPACD*GKWRHWPFTALNGY Trigger: GTACCCATTCAAGGCAGTAAATGGCCAGTGTCGCCACTTTCCTCAATCACAAGCTGGAGTTTCAGTCAAGGATTTTTCTGCATATAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CAA 90 bp | CATAGGACTTGTACCATAAAGGACAAGAGAGGGAATAAATGTGGACAATACTTCGGAGCCCAGGCATATTaGCTGCCTAAATACAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: HRTCTIKDKRGNKCGQYFGAQAY*LPKYKA Trigger: AGCTTTGTATTTAGGCAGCAAATATGCCTGGGCTCC...GAAGTATTGTCCACATTTATTCCCTCTCTTGTCCTTTATGGTACAAGTCCTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CAA 90 bp | GCTGAAATAAAACAACTGATATTCCAAATCTGTTCACATGGAACAGAAGGCCATTGGCCATTTACTGCCTaGAATGGGTACTGTGAATCT | + |
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Preference number: 5 (lower is better) Translates to: AEIKQLIFQICSHGTEGHWPFTA*NGYCES Trigger: AGATTCACAGTACCCATTCAAGGCAGTAAATGGCCA...ATGGCCTTCTGTTCCATGTGAACAGATTTGGAATATCAGTTGTTTTATTTCAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS-3UTR CAA 90 bp | ATATTCCAAATCTGTTCACATGGAACAGAAGGCCATTCTAATTATGAGGCACACTATGCAGAAAAATCCTaGACTGAAACTCCAGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: IFQICSHGTEGHSNYEAHYAEKS*TETPAC Trigger: ACAAGCTGGAGTTTCAGTCAAGGATTTTTCTGCATA...GTGTGCCTCATAATTAGAATGGCCTTCTGTTCCATGTGAACAGATTTGGAATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 72 bp | GGATTGCACGAGCTGACTCTATGGCACTCACCACGCTaGAGGCCCAGCATCCTCCACACATCTCCTGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GLHELTLWHSPR*RPSILHTSPGS Trigger: GGAACCAGGAGATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGAGTGCCATAGAGTCAGCTCGTGCAATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS GCA 72 bp | GGTTGGCCTCCCCACTGGAGCAGTGATGTTGGATTATaGCCCCCAGATAATCCTGCCAGCTCATCGCATCAA | + |
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Preference number: 6 (lower is better) Translates to: GWPPHWSSDVGL*PPDNPASSSHQ Trigger: TTGATGCGATGAGCTGGCAGGATTATCTGGGGGGCATAATCCAACATCACTGCTCCAGTGGGGAGGCCAACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 72 bp | CAGGTAATCCAGAGATTTCCCTTGGATTGCACGAGCTaGCTCTATGGCACTCACCACGCTGAAGGCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: QVIQRFPLDCTS*LYGTHHAEGPA Trigger: TGCTGGGCCTTCAGCGTGGTGAGTGCCATAGAGTCAGCTCGTGCAATCCAAGGGAAATCTCTGGATTACCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CAA 90 bp | ACAACATGCTTGTCCCTCCAGTCAAATCTCAATGGCAAAGACACATaGGGGATAGGTCTCTGTCCTTCTGCTGGGTATCTGGGAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: TTCLSLQSNLNGKDT*GIGLCPSAGYLGAQ Trigger: CTGGGCTCCCAGATACCCAGCAGAAGGACAGAGACCTATCCCCAATGTGTCTTTGCCATTGAGATTTGACTGGAGGGACAAGCATGTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS GCA 72 bp | ATCAACTATCACAACCAAAGGGCCGAAGGACAGAAGTaGTCTGGCCATTTCATCCTCTTGGCCCCTGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: INYHNQRAEGQK*SGHFILLAPEV Trigger: AACTTCAGGGGCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCTTCGGCCCTTTGGTTGTGATAGTTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CAA 72 bp | GCCGAAGGACAGAAGTGCTCTGGCCATTTCATCCTCTaGGCCCCTGAAGTTATATGCAGAAAAATCCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: AEGQKCSGHFIL*APEVICRKILD Trigger: GTCAAGGATTTTTCTGCATATAACTTCAGGGGCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCTTCGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CAA 90 bp | CATCCTCCACACATCTCCTGGTTCCTTACAGGATTCACAACATGCTaGTCCCTCCAGTCAAATCTCAATGGCAAAGACACATTGGGGATA | + |
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Preference number: 6 (lower is better) Translates to: HPPHISWFLTGFTTC*SLQSNLNGKDTLGI Trigger: TATCCCCAATGTGTCTTTGCCATTGAGATTTGACTGGAGGGACAAGCATGTTGTGAATCCTGTAAGGAACCAGGAGATGTGTGGAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS TCA 72 bp | ATTGAGGAAAGTGGCGACACTGGCCATTTACTGCCTTaGATGGGTACTGTGAATCTGCCACCAACTTCAACT | + |
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Preference number: 6 (lower is better) Translates to: IEESGDTGHLLP*MGTVNLPPTST Trigger: AGTTGAAGTTGGTGGCAGATTCACAGTACCCATTCAAGGCAGTAAATGGCCAGTGTCGCCACTTTCCTCAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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| CDS CCA 72 bp | CCGAAGGACAGAAGTGCTCTGGCCATTTCATCCTCTTaGCCCCTGAAGTTATATGCAGAAAAATCCTTGACT | + |
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Preference number: 6 (lower is better) Translates to: PKDRSALAISSS*PLKLYAEKSLT Trigger: AGTCAAGGATTTTTCTGCATATAACTTCAGGGGCCAAGAGGATGAAATGGCCAGAGCACTTCTGTCCTTCGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029649.3 |
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