RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CTSM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074871

Ensembl transcript IDs: ENSMUST00000099451.4, ENSMUST00000223778.2, ENSMUST00000225268.2, ENSMUST00000225965.2

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATaGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACCAGGTAGTTCA +
Preference number: 1 (lower is better)
Translates to: QQWPVILKWKCLFST*CLLSIPSLSAPGSS
Trigger: TGAACTACCTGGTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR GCA 90 bp AGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTaGCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCA +
Preference number: 1 (lower is better)
Translates to: SVLYTQQWPVILKWK*LFSTWCLLSIPSLS
Trigger: TGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR CCA 90 bp AACTGTAGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATaGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCC +
Preference number: 1 (lower is better)
Translates to: NCSVLYTQQWPVILK*KCLFSTWCLLSIPS
Trigger: GGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACTACAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR TCA 90 bp TCAATAACTGTAGTGTTTTATATACACAGCAGTGGCCTGTTATTTTaGAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTC +
Preference number: 1 (lower is better)
Translates to: SITVVFYIHSSGLLF*NGSASSLHGVFCPF
Trigger: GAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACTACAGTTATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR TCA 90 bp TTTCCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACGGCTTGCTATTTTCCTaGCACATCCTTAGAACAACA +
Preference number: 2 (lower is better)
Translates to: FPLACYFPDTSLEQHITDGLLFS*HILRTT
Trigger: TGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCC...GTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR CCA 90 bp TACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGCCTGTTATTTTGAAATaGAAGTGCCTCTTCTCTACA +
Preference number: 2 (lower is better)
Translates to: YTAVACYFEMEVPLLYMVPVILK*KCLFST
Trigger: TGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGG...CACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR GCA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAAATTTTGAAATGGAAGTaGCTCTTCTCTACATGGTGT +
Preference number: 2 (lower is better)
Translates to: PLACYFPDTSLEQHITDKILKWK*LFSTWC
Trigger: ACACCATGTAGAGAAGAGGCACTTCCATTTCAAAAT...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR GCA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCATTTTGAAATGGAAGTaGCTCTTCTCTACATGGTGT +
Preference number: 2 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSILKWK*LFSTWC
Trigger: ACACCATGTAGAGAAGAGGCACTTCCATTTCAAAAT...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR CAA 90 bp TTCAATAACTGTAGTGTTTTATATACACAGCAGTGGCCTGTTATTTaGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATT +
Preference number: 2 (lower is better)
Translates to: FNNCSVLYTQQWPVI*KWKCLFSTWCLLSI
Trigger: AATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACTACAGTTATTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR CCA 90 bp GTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTCCTGTTATTTTGAAATaGAAGTGCCTCTTCTCTACA +
Preference number: 2 (lower is better)
Translates to: VLYTQQWPVILKWKCLFSPVILK*KCLFST
Trigger: TGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGG...AGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR GCA 90 bp GCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCAAAATTTTGAAATGGAAGTaGCTCTTCTCTACATGGTGT +
Preference number: 2 (lower is better)
Translates to: ACYFPDTSLEQHITDKSKILKWK*LFSTWC
Trigger: ACACCATGTAGAGAAGAGGCACTTCCATTTCAAAAT...TTTGGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR CAA 90 bp AAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCACAGTGGCCTGTTATTTaGAAATGGAAGTGCCTCTTC +
Preference number: 3 (lower is better)
Translates to: KWKCLFSTWCLLSIPSLSQWPVI*KWKCLF
Trigger: GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTG...TGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR CAA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCCAGTGGCCTGTTATTTaGAAATGGAAGTGCCTCTTC +
Preference number: 3 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSQWPVI*KWKCLF
Trigger: GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTG...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR CAA 90 bp GTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTCAGTGGCCTGTTATTTaGAAATGGAAGTGCCTCTTC +
Preference number: 3 (lower is better)
Translates to: VLYTQQWPVILKWKCLFSQWPVI*KWKCLF
Trigger: GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTG...AGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR TCA 72 bp GTAGTGTTTTATATACACAGCAGTGGCCTGTTATTTTaGAATGGAAGTGCCTCTTCTCTACATGGTGTCTTC +
Preference number: 3 (lower is better)
Translates to: VVFYIHSSGLLF*NGSASSLHGVF
Trigger: GAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR-3UTR CAA 90 bp GCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCAAACAGTGGCCTGTTATTTaGAAATGGAAGTGCCTCTTC +
Preference number: 3 (lower is better)
Translates to: ACYFPDTSLEQHITDKSKQWPVI*KWKCLF
Trigger: GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTG...TTTGGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
3UTR CCA 72 bp ACACATTTTCATCTCCAAGGTTTATTTTCCTGCACATaGACTTTGAACTGCAAGATTCTGGCAATGTGTAAT +
Preference number: 3 (lower is better)
Translates to: THFHLQGLFSCT*TLNCKILAMCN
Trigger: ATTACACATTGCCAGAATCTTGCAGTTCAAAGTCCATGTGCAGGAAAATAAACCTTGGAGATGAAAATGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp AAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCACCAGCCAGTATTTCCTaGCATCTGATTCTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: KWKCLFSTWCLLSIPSLSPASIS*HLILFL
Trigger: CAGGAAGAGAATCAGATGGCAGGAAATACTGGCTGG...TGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CCA 90 bp TGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCCGATTGCAACAGAAATaGGCCCTATACTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: WPVILKWKCLFSTWCLLSRLQQK*ALYLPQ
Trigger: CTGTGGCAAGTATAGGGCCCATTTCTGTTGCAATCG...GGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR TCA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTACCCATGCTGTTCTTaGCCAGCCAGTATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSYPCCS*PASISC
Trigger: GCAGGAAATACTGGCTGGTCAAGAACAGCATGGGTA...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR TCA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATACCCATGCTGTTCTTaGCCAGCCAGTATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: PLACYFPDTSLEQHITDKYPCCS*PASISC
Trigger: GCAGGAAATACTGGCTGGTCAAGAACAGCATGGGTA...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp AATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGATAGAACAGGAAAGATaGATGCCTTGCATCGATTGC +
Preference number: 4 (lower is better)
Translates to: NGSASSLHGVFCPFLPCQIEQER*MPCIDC
Trigger: GCAATCGATGCAAGGCATGCATCTTTCCTGTTCTAT...CTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR CCA 90 bp AATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGATTCAACATCCAAAATaGGATCAGGTGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: NGSASSLHGVFCPFLPCQIQHPK*DQVLVM
Trigger: CATCACCAGCACCTGATCCCATTTTGGATGTTGAAT...CTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR TCA 90 bp TGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCTGGACTGTACCTGCATaGTCCATCCTTTTCTTCATA +
Preference number: 4 (lower is better)
Translates to: WPVILKWKCLFSTWCLLSWTVPA*SILFFI
Trigger: TATGAAGAAAAGGATGGATCATGCAGGTACAGTCCA...GGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225965.2
CDS-3UTR GCA 90 bp TACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGATGCAAGGTATGTATTaGCCAAATAACAGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: YTAVACYFEMEVPLLYMVMQGMY*PNNSPS
Trigger: ACTGGGGCTGTTATTTGGGCAATACATACCTTGCAT...CACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp TGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCAACAGGAAAGATGCATaGCTTGCATCGATTGCAACA +
Preference number: 4 (lower is better)
Translates to: WPVILKWKCLFSTWCLLSNRKDA*LASIAT
Trigger: TGTTGCAATCGATGCAAGGCATGCATCTTTCCTGTT...GGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR GCA 90 bp CAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGATAGAACAGGAAAGATaGATGCCTTGCATCGATTGC +
Preference number: 4 (lower is better)
Translates to: QWPVILKWKCLFSTWCLLIEQER*MPCIDC
Trigger: GCAATCGATGCAAGGCATGCATCTTTCCTGTTCTAT...CAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR CCA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAACGATTGCAACAGAAATaGGCCCTATACTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: PLACYFPDTSLEQHITDKRLQQK*ALYLPQ
Trigger: CTGTGGCAAGTATAGGGCCCATTTCTGTTGCAATCG...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR GCA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAAAACAAGAATTACATCTaGCCTGTGTCTGCACAGGAG +
Preference number: 4 (lower is better)
Translates to: PLACYFPDTSLEQHITDKNKNYI*PVSAQE
Trigger: CTCCTGTGCAGACACAGGGCAGATGTAATTCTTGTT...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp AAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCACATCACATAGTGCAATaGAAGGTATGTATTGCCCAA +
Preference number: 4 (lower is better)
Translates to: KWKCLFSTWCLLSIPSLSHHIVQ*KVCIAQ
Trigger: TTGGGCAATACATACCTTGCATTGCACTATGTGATG...TGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp AGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCCCAGCCAGTATTTCCTaGCATCTGATTCTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: SVLYTQQWPVILKWKCLFPASIS*HLILFL
Trigger: CAGGAAGAGAATCAGATGGCAGGAAATACTGGCTGG...GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CCA 90 bp CTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCCGATTGCAACAGAAATaGGCCCTATACTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: LACYFPDTSLEQHITDKSRLQQK*ALYLPQ
Trigger: CTGTGGCAAGTATAGGGCCCATTTCTGTTGCAATCG...GGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR TCA 90 bp CTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCGTATTTCCTGCCATCTaGTTCTCTTCCTGTAAAGCC +
Preference number: 4 (lower is better)
Translates to: LACYFPDTSLEQHITDKSVFPAI*FSSCKA
Trigger: GGCTTTACAGGAAGAGAATCAGATGGCAGGAAATAC...GGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAAATTGTCTTCCCATACTaGTCTCTTCTGTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PLACYFPDTSLEQHITDKIVFPY*SLLSFF
Trigger: GAAGAAGGACAGAAGAGAGCAGTATGGGAAGACAAT...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp GTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTATTGTCTTCCCATACTaGTCTCTTCTGTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: VILKWKCLFSTWCLLSIPIVFPY*SLLSFF
Trigger: GAAGAAGGACAGAAGAGAGCAGTATGGGAAGACAAT...AGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp GTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTAACAAGAATTACATCTaGCCTGTGTCTGCACAGGAG +
Preference number: 4 (lower is better)
Translates to: VLYTQQWPVILKWKCLFSNKNYI*PVSAQE
Trigger: CTCCTGTGCAGACACAGGGCAGATGTAATTCTTGTT...AGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCATAGAACAGGAAAGATaGATGCCTTGCATCGATTGC +
Preference number: 4 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSIEQER*MPCIDC
Trigger: GCAATCGATGCAAGGCATGCATCTTTCCTGTTCTAT...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR GCA 90 bp TTTCCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACATAGAACAGGAAAGATaGATGCCTTGCATCGATTGC +
Preference number: 4 (lower is better)
Translates to: FPLACYFPDTSLEQHITDIEQER*MPCIDC
Trigger: GCAATCGATGCAAGGCATGCATCTTTCCTGTTCTAT...GTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR CCA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAAATTCAACATCCAAAATaGGATCAGGTGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: PLACYFPDTSLEQHITDKIQHPK*DQVLVM
Trigger: CATCACCAGCACCTGATCCCATTTTGGATGTTGAAT...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR TCA 90 bp AACTGTAGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCGTATTTCCTGCCATCTaGTTCTCTTCCTGTAAAGCC +
Preference number: 4 (lower is better)
Translates to: NCSVLYTQQWPVILKWKCVFPAI*FSSCKA
Trigger: GGCTTTACAGGAAGAGAATCAGATGGCAGGAAATAC...GCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACTACAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp AGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCAACAGGAAAGATGCATaGCTTGCATCGATTGCAACA +
Preference number: 4 (lower is better)
Translates to: SVLYTQQWPVILKWKCLFNRKDA*LASIAT
Trigger: TGTTGCAATCGATGCAAGGCATGCATCTTTCCTGTT...GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR CCA 90 bp ATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGGTTTCCCTTGTCTCTaGAAATCTTCATATAGCCTT +
Preference number: 4 (lower is better)
Translates to: IYTAVACYFEMEVPLLYMGFPCL*KSSYSL
Trigger: AAGGCTATATGAAGATTTCCAGAGACAAGGGAAACC...CATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR TCA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCCCCCATTGTGCAGTTTaGTCTTTTTCATATTGTCTT +
Preference number: 4 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSPHCAV*SFSYCL
Trigger: AAGACAATATGAAAAAGATCAAACTGCACAATGGGG...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
39% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR GCA 90 bp AGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCCATCACATAGTGCAATaGAAGGTATGTATTGCCCAA +
Preference number: 4 (lower is better)
Translates to: SVLYTQQWPVILKWKCLFHHIVQ*KVCIAQ
Trigger: TTGGGCAATACATACCTTGCATTGCACTATGTGATG...GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CCA 90 bp CTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCGGTTTCCCTTGTCTCTaGAAATCTTCATATAGCCTT +
Preference number: 4 (lower is better)
Translates to: LACYFPDTSLEQHITDKSGFPCL*KSSYSL
Trigger: AAGGCTATATGAAGATTTCCAGAGACAAGGGAAACC...GGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR TCA 90 bp AGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCCCCCATTGTGCAGTTTaGTCTTTTTCATATTGTCTT +
Preference number: 4 (lower is better)
Translates to: SVLYTQQWPVILKWKCLFPHCAV*SFSYCL
Trigger: AAGACAATATGAAAAAGATCAAACTGCACAATGGGG...GAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR TCA 90 bp ACAACTGACTTTTCAATAACTGTAGTGTTTTATATACACAGCAGTGGCCTGTTATGGACTGTACCTGCATaGTCCATCCTTTTCTTCATA +
Preference number: 4 (lower is better)
Translates to: TTDFSITVVFYIHSSGLLWTVPA*SILFFI
Trigger: TATGAAGAAAAGGATGGATCATGCAGGTACAGTCCA...TAACAGGCCACTGCTGTGTATATAAAACACTACAGTTATTGAAAAGTCAGTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225965.2
CDS-3UTR TCA 90 bp GCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCAAATGGACTGTACCTGCATaGTCCATCCTTTTCTTCATA +
Preference number: 4 (lower is better)
Translates to: ACYFPDTSLEQHITDKSKWTVPA*SILFFI
Trigger: TATGAAGAAAAGGATGGATCATGCAGGTACAGTCCA...TTTGGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225965.2
CDS-3UTR GCA 90 bp GCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCAAAAACAGGAAAGATGCATaGCTTGCATCGATTGCAACA +
Preference number: 4 (lower is better)
Translates to: ACYFPDTSLEQHITDKSKNRKDA*LASIAT
Trigger: TGTTGCAATCGATGCAAGGCATGCATCTTTCCTGTT...TTTGGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR CCA 90 bp TTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACAGAGCTACTGCAGTTTaGCTCATAATATATACCTCT +
Preference number: 4 (lower is better)
Translates to: FIYTAVACYFEMEVPLLYRATAV*LIIYTS
Trigger: AGAGGTATATATTATGAGCCAAACTGCAGTAGCTCT...GTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CCA 90 bp GCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAATCCAAAAGAGCTACTGCAGTTTaGCTCATAATATATACCTCT +
Preference number: 4 (lower is better)
Translates to: ACYFPDTSLEQHITDKSKRATAV*LIIYTS
Trigger: AGAGGTATATATTATGAGCCAAACTGCAGTAGCTCT...TTTGGATTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCACAGCCCCAGTTGCCTaGAGGCCTAGAACAGTCCAC +
Preference number: 5 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSTAPVA*RPRTVH
Trigger: GTGGACTGTTCTAGGCCTCAAGGCAACTGGGGCTGT...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp TTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACACAGCCCCAGTTGCCTaGAGGCCTAGAACAGTCCAC +
Preference number: 5 (lower is better)
Translates to: FIYTAVACYFEMEVPLLYTAPVA*RPRTVH
Trigger: GTGGACTGTTCTAGGCCTCAAGGCAACTGGGGCTGT...GTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAAGTACCCATGCTGTTCTaGACCAGCCAGTATTTCCTG +
Preference number: 5 (lower is better)
Translates to: PLACYFPDTSLEQHITDKVPMLF*TSQYFL
Trigger: CAGGAAATACTGGCTGGTCAAGAACAGCATGGGTAC...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp ACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTCCACAGTGGTTTCCCTaGTCTCTGGAAATCTTCATA +
Preference number: 5 (lower is better)
Translates to: TAVACYFEMEVPLLYMVSPQWFP*SLEIFI
Trigger: TATGAAGATTTCCAGAGACAAGGGAAACCACTGTGG...AGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACAGGCCACTGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp CCCCTGGCTTGCTATTTTCCTGACACATCCTTAGAACAACATATTACTGACAAAAAATGGGCCCTATACTaGCCACAGCATTCATTAGGG +
Preference number: 5 (lower is better)
Translates to: PLACYFPDTSLEQHITDKKWALY*PQHSLG
Trigger: CCCTAATGAATGCTGTGGCAAGTATAGGGCCCATTT...TTTGTCAGTAATATGTTGTTCTAAGGATGTGTCAGGAAAATAGCAAGCCAGGGG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS-3UTR CAA 90 bp TGTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCCCACAGTGGTTTCCCTaGTCTCTGGAAATCTTCATA +
Preference number: 5 (lower is better)
Translates to: CYFEMEVPLLYMVSSVHSPQWFP*SLEIFI
Trigger: TATGAAGATTTCCAGAGACAAGGGAAACCACTGTGG...GGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS CCA 90 bp TTTTTCCAGTTTATAAACTTGGGCAGGTTAACAGACAGACGTTTCTaGACACTTTTCCCTTTCTTGACAGTTGGGACTGGGATTTCAATC +
Preference number: 5 (lower is better)
Translates to: FFQFINLGRLTDRRF*TLFPFLTVGTGISI
Trigger: GATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAACCTGCCCAAGTTTATAAACTGGAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp AACTGTAGTGTTTTATATACACAGCAGTGGCCTGTTATTTTGAAATGGAAGTGCGCCTTTATTGCCCCATaGTGTACCCATGCTCTTTTA +
Preference number: 5 (lower is better)
Translates to: NCSVLYTQQWPVILKWKCAFIAP*CTHALL
Trigger: TAAAAGAGCATGGGTACACAATGGGGCAATAAAGGC...GCACTTCCATTTCAAAATAACAGGCCACTGCTGTGTATATAAAACACTACAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000225268.2
CDS TCA 90 bp AAAGCCTGTTATATTAGCAGTAGAATTTTCTGGACTGTACCTGCATaGTCCATCCTTTTCTTCATAAGGATAGGTTGCCTCAGACTCTNN +
Preference number: 5 (lower is better)
Translates to: KACYISSRIFWTVPA*SILFFIRIGCLRLX
Trigger: NNAGAGTCTGAGGCAACCTATCCTTATGAAGAAAAGGATGGATCATGCAGGTACAGTCCAGAAAATTCTACTGCTAATATAACAGGCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225965.2
CDS-3UTR CAA 90 bp GTTATTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCCCATTGTGCAGTTaGATCTTTTTCATATTGTCT +
Preference number: 5 (lower is better)
Translates to: VILKWKCLFSTWCLLSIPSPLCS*IFFILS
Trigger: AGACAATATGAAAAAGATCAAACTGCACAATGGGGA...AGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAATAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS-3UTR CAA 90 bp GCATGTTCTGGGGAGTTTCACATTTGTCTATCTCCATTTAACAAGGTACAAATGTCCCCATTGTGCAGTTaGATCTTTTTCATATTGTCT +
Preference number: 5 (lower is better)
Translates to: ACSGEFHICLSPFNKVQMSPLCS*IFFILS
Trigger: AGACAATATGAAAAAGATCAAACTGCACAATGGGGA...CATTTGTACCTTGTTAAATGGAGATAGACAAATGTGAAACTCCCCAGAACATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223778.2
CDS CAA 90 bp GTGCAATGCAAGGTATGTATTGCCCAAATAACAGCCCCAGTTGCCTaGAGGCCTAGAACAGTCCACAAGGTTCTGTACACTCAGAGGGAT +
Preference number: 6 (lower is better)
Translates to: VQCKVCIAQITAPVA*RPRTVHKVLYTQRD
Trigger: ATCCCTCTGAGTGTACAGAACCTTGTGGACTGTTCTAGGCCTCAAGGCAACTGGGGCTGTTATTTGGGCAATACATACCTTGCATTGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS TCA 72 bp AGCCTTTATTGCCCCATTGTGTACCCATGCTGTTCTTaGCCAGCCAGTATTTCCTGCCATCTGATTCTCTTC +
Preference number: 6 (lower is better)
Translates to: SLYCPIVYPCCS*PASISCHLILF
Trigger: GAAGAGAATCAGATGGCAGGAAATACTGGCTGGTCAAGAACAGCATGGGTACACAATGGGGCAATAAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS CAA 72 bp AAGGTATGTATTGCCCAAATAACAGCCCCAGTTGCCTaGAGGCCTAGAACAGTCCACAAGGTTCTGTACACT +
Preference number: 6 (lower is better)
Translates to: KVCIAQITAPVA*RPRTVHKVLYT
Trigger: AGTGTACAGAACCTTGTGGACTGTTCTAGGCCTCAAGGCAACTGGGGCTGTTATTTGGGCAATACATACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS CAA 90 bp CTGGACTGTACCTGCATGATCCATCCTTTTCTTCATAAGGATAGGTaGCCTCAGACTCTAGACCTCCATTTTCCATCACATAGTGCAATG +
Preference number: 6 (lower is better)
Translates to: LDCTCMIHPFLHKDR*PQTLDLHFPSHSAM
Trigger: CATTGCACTATGTGATGGAAAATGGAGGTCTAGAGTCTGAGGCAACCTATCCTTATGAAGAAAAGGATGGATCATGCAGGTACAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS GCA 72 bp TTTATAGAACAGGAAAGATGCATGCCTTGCATCGATTaGAACAGAAATGGGCCCTATACTTGCCACAGCATT +
Preference number: 6 (lower is better)
Translates to: FIEQERCMPCID*NRNGPYTCHSI
Trigger: AATGCTGTGGCAAGTATAGGGCCCATTTCTGTTGCAATCGATGCAAGGCATGCATCTTTCCTGTTCTATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225268.2
ENSMUST00000225965.2
CDS CAA 72 bp ACCTGCATGATCCATCCTTTTCTTCATAAGGATAGGTaGCCTCAGACTCTAGACCTCCATTTTCCATCACAT +
Preference number: 6 (lower is better)
Translates to: TCMIHPFLHKDR*PQTLDLHFPSH
Trigger: ATGTGATGGAAAATGGAGGTCTAGAGTCTGAGGCAACCTATCCTTATGAAGAAAAGGATGGATCATGCAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS CAA 90 bp TTGGGCAGGTTAACAGACAGACGTTTCTGGACACTTTTCCCTTTCTaGACAGTTGGGACTGGGATTTCAATCATCACTTTCCTAAATTCT +
Preference number: 6 (lower is better)
Translates to: LGRLTDRRFWTLFPF*TVGTGISIITFLNS
Trigger: AGAATTTAGGAAAGTGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAACCTGCCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS CCA 72 bp CAGACGTTTCTGGACACTTTTCCCTTTCTTGACAGTTaGGACTGGGATTTCAATCATCACTTTCCTAAATTC +
Preference number: 6 (lower is better)
Translates to: QTFLDTFPFLDS*DWDFNHHFPKF
Trigger: GAATTTAGGAAAGTGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS CAA 72 bp TTAACAGACAGACGTTTCTGGACACTTTTCCCTTTCTaGACAGTTGGGACTGGGATTTCAATCATCACTTTC +
Preference number: 6 (lower is better)
Translates to: LTDRRFWTLFPF*TVGTGISIITF
Trigger: GAAAGTGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
CDS TCA 72 bp TATATTAGCAGTAGAATTTTCTGGACTGTACCTGCATaGTCCATCCTTTTCTTCATAAGGATAGGTTGCCTC +
Preference number: 6 (lower is better)
Translates to: YISSRIFWTVPA*SILFFIRIGCL
Trigger: GAGGCAACCTATCCTTATGAAGAAAAGGATGGATCATGCAGGTACAGTCCAGAAAATTCTACTGCTAATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2
ENSMUST00000225965.2
CDS CCA 72 bp TTTCTGGACACTTTTCCCTTTCTTGACAGTTGGGACTaGGATTTCAATCATCACTTTCCTAAATTCTTCAAG +
Preference number: 6 (lower is better)
Translates to: FLDTFPFLDSWD*DFNHHFPKFFK
Trigger: CTTGAAGAATTTAGGAAAGTGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099451.4
ENSMUST00000223778.2