Pregenerated sensors for CTSLL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056728Ensembl transcript IDs: ENSMUST00000043754.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTGATTTCCTTGGTCCATaGCATCCTCTGTCTACTCCT | + |
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Preference number: 2 (lower is better) Translates to: VKLLTAIECHLNLTGIKCDFLGP*HPLSTP Trigger: AGGAGTAGACAGAGGATGGCATGGACCAAGGAAATC...ACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| 3UTR CCA 72 bp | GAGCTGAGGCTGGGCCACGAAGGGGAAAGATTTCCTTaGTCCATGCCATCCTCTGTCTACTCCTTGTTGTCC | + |
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Preference number: 3 (lower is better) Translates to: ELRLGHEGERFP*SMPSSVYSLLS Trigger: GGACAACAAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCAGCCTCAGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| 3UTR-3UTR CAA 90 bp | CATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCCAGAGTTCACACCATGTGACTCAGCCGCCATaGTCCACAGAGCTGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: HRVPLEFNWNKMSQSSHHVTQPP*STELRL Trigger: CAGCCTCAGCTCTGTGGACAATGGCGGCTGAGTCAC...ATGGTGTGAACTCTGGGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| 3UTR CCA 72 bp | ACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTaGAATAAAATGTCCCAGAGTTCACACCATAGCACG | + |
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Preference number: 3 (lower is better) Translates to: TAHSHRVPLEFN*NKMSQSSHHST Trigger: CGTGCTATGGTGTGAACTCTGGGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| 3UTR GCA 72 bp | AACGCCATGGATGTAAAACTGCTCACAGCCATAGAGTaGCACTTGAATTTAACTGGAATAAAATGTCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: NAMDVKLLTAIE*HLNLTGIKCPR Trigger: TCTGGGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTACATCCATGGCGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GGCTGGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCACCATCGCAGCCTTaGTTGCCTTGTGACCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GWATKGKDFLGPCHPLSTPPSQP*LPCDQE Trigger: CTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGG...AGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GGCTGGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCTGGAAGGCAAGATCTaGCAAGCCACCATCGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GWATKGKDFLGPCHPLSTLEGKI*QATIAA Trigger: GGCTGCGATGGTGGCTTGCCAGATCTTGCCTTCCAG...AGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTTCCCCTAAGCACAGGGTaGCCAGGAGGAAAACTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GPRRGKISLVHAILCLLLPLSTG*PGGKLE Trigger: CTCCAGTTTTCCTCCTGGCCACCCTGTGCTTAGGGG...AAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| 3UTR CAA 72 bp | AGAGCTGAGGCTGGGCCACGAAGGGGAAAGATTTCCTaGGTCCATGCCATCCTCTGTCTACTCCTTGTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: RAEAGPRRGKIS*VHAILCLLLVV Trigger: GACAACAAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCAGCCTCAGCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GGCTGGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTAGTGCTGCTACAGTCTaGCTCATAGTACATGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: GWATKGKDFLGPCHPLSTSAATV*LIVHAL Trigger: GAGGGCATGTACTATGAGCCAGACTGTAGCAGCACT...AGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR TCA 90 bp | GGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTTGTACTTCCTGCCATCTaGTTCTTCACCATAGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: GPRRGKISLVHAILCLLLVLPAI*FFTIAN Trigger: GTTGGCTATGGTGAAGAATCAGATGGCAGGAAGTAC...AAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR GCA 90 bp | GGCTGGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTGCATGTTCCATTCAGTaGTTCATATGGGTAGGACAC | + |
|
Preference number: 4 (lower is better) Translates to: GWATKGKDFLGPCHPLSTACSIQ*FIWVGH Trigger: GTGTCCTACCCATATGAAGCACTGAATGGAACATGC...AGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR GCA 90 bp | TGGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTGATCCAGAACAGTGCTaGTACAGTCTGGCTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: WATKGKDFLGPCHPLSTPDPEQC*YSLAHS Trigger: ACTATGAGCCAGACTGTAGCAGCACTGTTCTGGATC...AGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR GCA 90 bp | GGGCCACGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTTCCAGCCAGTACTTCCTaGCATCTGATTCTTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: GPRRGKISLVHAILCLLLPASTS*HLILHH Trigger: ATGGTGAAGAATCAGATGGCAGGAAGTACTGGCTGG...AAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCGTGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTTGTTGTCCAGCGAGCCACAAGAACCCTaGTCTTTCACAGGAGTTACA | + |
|
Preference number: 4 (lower is better) Translates to: GERFPWSMPSSVYSLLSSEPQEP*SFTGVT Trigger: TGTAACTCCTGTGAAAGACCAGGGTTCTTGTGGCTC...GCTGGACAACAAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTTGTTGTCCAGCAGTTATCCTTTACGTACTaGAAGGCAAGATCTGGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GKISLVHAILCLLLVVQQLSFTY*KARSGK Trigger: CTTGCCAGATCTTGCCTTCCAGTACGTAAAGGATAA...CTGCTGGACAACAAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR TCA 90 bp | TGTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGGACCCCAGCTGTTCTTaGCCAGCCAGTACTTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CKTAHSHRVPLEFNWNKMDPSCS*PASTSC Trigger: GCAGGAAGTACTGGCTGGTCAAGAACAGCTGGGGTC...CATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR TCA 90 bp | GTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTAGTGTCAATTCCAACTaGGATGGGCCCCACAGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VKLLTAIECHLNLTGIKCSVNSN*DGPHSG Trigger: GCCACTGTGGGGCCCATCTCAGTTGGAATTGACACT...ACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR GCA 90 bp | GTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCATCGCAGCCTTGGTTaGCTTGTGACCAGGAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: VKLLTAIECHLNLTGIKCHRSLG*LVTRSS Trigger: ACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATG...ACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | GTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCCAGCAAGGGCTCCTaGAAGACCTTCATCATCATC | + |
|
Preference number: 4 (lower is better) Translates to: VKLLTAIECHLNLTGIKCPSKGS*KTFIII Trigger: GATGATGATGAAGGTCTTCCAGGAGCCCTTGCTGGG...ACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR TCA 90 bp | AAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCCTTGGTCTTTTGGCCTTaGAAGCCAGTCATCAATTCC | + |
|
Preference number: 4 (lower is better) Translates to: KLLTAIECHLNLTGIKCPLVFWP*KPVINS Trigger: GGAATTGATGACTGGCTTTCAAGGCCAAAAGACCAA...GGGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | AAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCATACAGCATCCAAACTaGGATTGTGTGCTGGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KTAHSHRVPLEFNWNKMSIQHPN*DCVLEQ Trigger: CTGCTCCAGCACACAATCCCAGTTTGGATGCTGTAT...GGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | AAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCATGGGTAGGACACACTaGTGTCCAAGCCTCCATTAT | + |
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Preference number: 4 (lower is better) Translates to: KTAHSHRVPLEFNWNKMSMGRTH*CPSLHY Trigger: ATAATGGAGGCTTGGACACCAGTGTGTCCTACCCAT...GGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR GCA 90 bp | TGTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGGTTGTTCTCCCACACTaGTCTCTTCTGTCCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: CKTAHSHRVPLEFNWNKMVVLPH*SLLSFI Trigger: GATGAAGGACAGAAGAGAGCAGTGTGGGAGAACAAC...CATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | AAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCATTCAGTGCTTCATATaGGTAGGACACACTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: KTAHSHRVPLEFNWNKMSIQCFI*VGHTGV Trigger: GACACCAGTGTGTCCTACCCATATGAAGCACTGAAT...GGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CCA 90 bp | TGTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGCCTTCATCATCATCTTaGTCTTTTGGCCTTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: CKTAHSHRVPLEFNWNKMPSSSS*SFGLES Trigger: GCTTTCAAGGCCAAAAGACCAAGATGATGATGAAGG...CATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 90 bp | TTTACGTACTGGAAGGCAAGATCTGGCAAGCCACCATCGCAGCCTTaGTTGCCTTGTGACCAGGAGCAGTCCACTAGGTTCTGTACACTC | + |
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Preference number: 5 (lower is better) Translates to: FTYWKARSGKPPSQP*LPCDQEQSTRFCTL Trigger: GAGTGTACAGAACCTAGTGGACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGGCTTGCCAGATCTTGCCTTCCAGTACGTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | CATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCCAGAGTTCACACCATCCATCGCAGCCTTGGTaGCCTTGTGACCAGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: HRVPLEFNWNKMSQSSHHPSQPW*PCDQEQ Trigger: CTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGG...ATGGTGTGAACTCTGGGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | CGAAGGGGAAAGATTTCCTTGGTCCATGCCATCCTCTGTCTACTCCTTGTTGTCGCAGAGTTTTTAGGATaGTACCTGCATGTTCCATTC | + |
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Preference number: 5 (lower is better) Translates to: RRGKISLVHAILCLLLVVAEFLG*YLHVPF Trigger: GAATGGAACATGCAGGTACAATCCTAAAAACTCTGC...GACAACAAGGAGTAGACAGAGGATGGCATGGACCAAGGAAATCTTTCCCCTTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | CATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCCAGAGTTCACACCATCGACCCCAGCTGTTCTaGACCAGCCAGTACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: HRVPLEFNWNKMSQSSHHRPQLF*TSQYFL Trigger: CAGGAAGTACTGGCTGGTCAAGAACAGCTGGGGTCG...ATGGTGTGAACTCTGGGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | TGTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGCTCCAATCCACAGACTaGGGGACATCACCCAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: CKTAHSHRVPLEFNWNKMLQSTD*GTSPSK Trigger: CTTGCTGGGTGATGTCCCCAAGTCTGTGGATTGGAG...CATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS TCA 90 bp | TCATCATCTTGGTCTTTTGGCCTTGAAAGCCAGTCATCAATTCCCTaGATTCTGTATTGGTCAAATCACCAAAGGCGTTCATCTCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: SSSWSFGLESQSSIP*ILYWSNHQRRSSPS Trigger: GCTTGGAGATGAACGCCTTTGGTGATTTGACCAATACAGAATTCAGGGAATTGATGACTGGCTTTCAAGGCCAAAAGACCAAGATGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | AAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCCCTTGGTCTTTTGGCCTaGAAAGCCAGTCATCAATTC | + |
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Preference number: 5 (lower is better) Translates to: KTAHSHRVPLEFNWNKMSLGLLA*KASHQF Trigger: GAATTGATGACTGGCTTTCAAGGCCAAAAGACCAAG...GGACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | GTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGTCATCATCTTGGTCTTTaGGCCTTGAAAGCCAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: VKLLTAIECHLNLTGIKCHHLGL*ALKASH Trigger: ATGACTGGCTTTCAAGGCCAAAAGACCAAGATGATG...ACATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS-3UTR CAA 90 bp | TGTAAAACTGCTCACAGCCATAGAGTGCCACTTGAATTTAACTGGAATAAAATGATGTTTTCTTGTGTTTaGTCTTCCATTCCTCCCATA | + |
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Preference number: 5 (lower is better) Translates to: CKTAHSHRVPLEFNWNKMMFSCV*SSIPPI Trigger: TATGGGAGGAATGGAAGACAAAACACAAGAAAACAT...CATTTTATTCCAGTTAAATTCAAGTGGCACTCTATGGCTGTGAGCAGTTTTACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 72 bp | TGGAAGGCAAGATCTGGCAAGCCACCATCGCAGCCTTaGTTGCCTTGTGACCAGGAGCAGTCCACTAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: WKARSGKPPSQP*LPCDQEQSTRF Trigger: GAACCTAGTGGACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGGCTTGCCAGATCTTGCCTTCCA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS GCA 72 bp | AGGCAAGATCTGGCAAGCCACCATCGCAGCCTTGGTTaGCTTGTGACCAGGAGCAGTCCACTAGGTTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: RQDLASHHRSLG*LVTRSSPLGSV Trigger: TACAGAACCTAGTGGACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGGCTTGCCAGATCTTGCCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 72 bp | GTGGCCACAGCCTTCATCAGGGCATCTTCACTGGATTaGACGTTCACAAAGCCCGTGACTGTAGCAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: VATAFIRASSLD*TFTKPVTVAAE Trigger: CTCTGCTGCTACAGTCACGGGCTTTGTGAACGTCCAATCCAGTGAAGATGCCCTGATGAAGGCTGTGGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 72 bp | AAGGCAAGATCTGGCAAGCCACCATCGCAGCCTTGGTaGCCTTGTGACCAGGAGCAGTCCACTAGGTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: KARSGKPPSQPW*PCDQEQSTRFC Trigger: ACAGAACCTAGTGGACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGGCTTGCCAGATCTTGCCTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 90 bp | ACGTACTGGAAGGCAAGATCTGGCAAGCCACCATCGCAGCCTTGGTaGCCTTGTGACCAGGAGCAGTCCACTAGGTTCTGTACACTCAGA | + |
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Preference number: 6 (lower is better) Translates to: TYWKARSGKPPSQPW*PCDQEQSTRFCTLR Trigger: TCTGAGTGTACAGAACCTAGTGGACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGGCTTGCCAGATCTTGCCTTCCAGTACGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 72 bp | AGTGGCCACAGCCTTCATCAGGGCATCTTCACTGGATaGGACGTTCACAAAGCCCGTGACTGTAGCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SGHSLHQGIFTG*DVHKARDCSSR Trigger: TCTGCTGCTACAGTCACGGGCTTTGTGAACGTCCAATCCAGTGAAGATGCCCTGATGAAGGCTGTGGCCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 90 bp | TTGTGTTTTGTCTTCCATTCCTCCCATACAGCATCCAAACTGGGATaGTGTGCTGGAGCAGCTGAGACCACCCCTAAGCACAGGGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: LCFVFHSSHTASKLG*CAGAAETTPKHRVA Trigger: GGCCACCCTGTGCTTAGGGGTGGTCTCAGCTGCTCCAGCACACAATCCCAGTTTGGATGCTGTATGGGAGGAATGGAAGACAAAACACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 72 bp | TCCACAGACTTGGGGACATCACCCAGCAAGGGCTCCTaGAAGACCTTCATCATCATCTTGGTCTTTTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: STDLGTSPSKGS*KTFIIILVFWP Trigger: AGGCCAAAAGACCAAGATGATGATGAAGGTCTTCCAGGAGCCCTTGCTGGGTGATGTCCCCAAGTCTGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 72 bp | CAGGACGGCGTGATCCAGAACAGTGCTGCTACAGTCTaGCTCATAGTACATGCCCTCCTTGTAGAACTGGAA | + |
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Preference number: 6 (lower is better) Translates to: QDGVIQNSAATV*LIVHALLVELE Trigger: TTCCAGTTCTACAAGGAGGGCATGTACTATGAGCCAGACTGTAGCAGCACTGTTCTGGATCACGCCGTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 72 bp | CCAGCAAGGGCTCCTGGAAGACCTTCATCATCATCTTaGTCTTTTGGCCTTGAAAGCCAGTCATCAATTCCC | + |
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Preference number: 6 (lower is better) Translates to: PARAPGRPSSSS*SFGLESQSSIP Trigger: GGGAATTGATGACTGGCTTTCAAGGCCAAAAGACCAAGATGATGATGAAGGTCTTCCAGGAGCCCTTGCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 90 bp | ACCCAGCAAGGGCTCCTGGAAGACCTTCATCATCATCTTGGTCTTTaGGCCTTGAAAGCCAGTCATCAATTCCCTGAATTCTGTATTGGT | + |
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Preference number: 6 (lower is better) Translates to: TQQGLLEDLHHHLGL*ALKASHQFPEFCIG Trigger: ACCAATACAGAATTCAGGGAATTGATGACTGGCTTTCAAGGCCAAAAGACCAAGATGATGATGAAGGTCTTCCAGGAGCCCTTGCTGGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CCA 72 bp | ATGTTCCATTCAGTGCTTCATATGGGTAGGACACACTaGTGTCCAAGCCTCCATTATCCTTTACGTACTGGA | + |
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Preference number: 6 (lower is better) Translates to: MFHSVLHMGRTH*CPSLHYPLRTG Trigger: TCCAGTACGTAAAGGATAATGGAGGCTTGGACACCAGTGTGTCCTACCCATATGAAGCACTGAATGGAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 72 bp | ACAAAGCCCGTGACTGTAGCAGCAGAGTTTTTAGGATaGTACCTGCATGTTCCATTCAGTGCTTCATATGGG | + |
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Preference number: 6 (lower is better) Translates to: TKPVTVAAEFLG*YLHVPFSASYG Trigger: CCCATATGAAGCACTGAATGGAACATGCAGGTACAATCCTAAAAACTCTGCTGCTACAGTCACGGGCTTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 90 bp | CAAGGGCTCCTGGAAGACCTTCATCATCATCTTGGTCTTTTGGCCTaGAAAGCCAGTCATCAATTCCCTGAATTCTGTATTGGTCAAATC | + |
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Preference number: 6 (lower is better) Translates to: QGLLEDLHHHLGLLA*KASHQFPEFCIGQI Trigger: GATTTGACCAATACAGAATTCAGGGAATTGATGACTGGCTTTCAAGGCCAAAAGACCAAGATGATGATGAAGGTCTTCCAGGAGCCCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 90 bp | CACACTGCTCTCTTCTGTCCTTCATCATTCATGTTGTATGTTTTCTaGTGTTTTGTCTTCCATTCCTCCCATACAGCATCCAAACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: HTALFCPSSFMLYVF*CFVFHSSHTASKLG Trigger: TCCCAGTTTGGATGCTGTATGGGAGGAATGGAAGACAAAACACAAGAAAACATACAACATGAATGATGAAGGACAGAAGAGAGCAGTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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| CDS CAA 90 bp | CTCTCTTCTGTCCTTCATCATTCATGTTGTATGTTTTCTTGTGTTTaGTCTTCCATTCCTCCCATACAGCATCCAAACTGGGATTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: LSSVLHHSCCMFSCV*SSIPPIQHPNWDCV Trigger: CACACAATCCCAGTTTGGATGCTGTATGGGAGGAATGGAAGACAAAACACAAGAAAACATACAACATGAATGATGAAGGACAGAAGAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043754.8 |
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