Pregenerated sensors for CTSK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028111Ensembl transcript IDs: ENSMUST00000015664.5
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATACAGAAGACAGGGGCTCGGGAAGGTCACCTTAGTCCTCCAGCCTaGTGGAGGACTCCAATGTCTACCAGCACAGAGTCCACAACTCTC | + |
|
Preference number: 1 (lower is better) Translates to: IQKTGAREGHLSPPA*WRTPMSTSTESTTL Trigger: GAGAGTTGTGGACTCTGTGCTGGTAGACATTGGAGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCCGAGCCCCTGTCTTCTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR GCA 90 bp | GAAACAATCTTAGTTAGCATCGCTGCGTCCCTCTCAGGAGCGCCATaGCCACTCCCTTCCAAAGCCACCAATATCTTGCACCATGAAGGA | + |
|
Preference number: 1 (lower is better) Translates to: ETILVSIAASLSGAP*PLPSKATNILHHEG Trigger: TCCTTCATGGTGCAAGATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGATGCTAACTAAGATTGTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR CCA 90 bp | AACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAAAAGGGCCCTaGGCAGAGAGAAGGGAAGTAGAGTTGTCACTGGAAGCACCAACG | + |
|
Preference number: 1 (lower is better) Translates to: NSQKNALLCPQRKGP*AERREVELSLEAPT Trigger: CGTTGGTGCTTCCAGTGACAACTCTACTTCCCTTCTCTCTGCCCAGGGCCCTTTTCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR CAA 90 bp | CTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATATCTaGCACCATGAAGGAAGGAATCTGAGAAGAGATGGGCTGGCTGGC | + |
|
Preference number: 2 (lower is better) Translates to: LSGAPCPLPSKATNI*HHEGRNLRRDGLAG Trigger: GCCAGCCAGCCCATCTCTTCTCAGATTCCTTCCTTCATGGTGCAAGATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR CAA 90 bp | AATGTCTACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTaGTGTCCACAAAGAAAAGGGCCCTGGGCAGAGAGAAGGGAAGTA | + |
|
Preference number: 2 (lower is better) Translates to: NVYQHRVHNSQKNAL*CPQRKGPWAERREV Trigger: TACTTCCCTTCTCTCTGCCCAGGGCCCTTTTCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTAGACATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR-3UTR TCA 90 bp | CAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAAAAATGAAGGAAGGAATCTaGGAAGAGATGGGCTGGCTG | + |
|
Preference number: 2 (lower is better) Translates to: QHRVHNSQKNALLCPQRKMKEGI*EEMGWL Trigger: CAGCCAGCCCATCTCTTCTCAGATTCCTTCCTTCAT...TTTTCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR GCA 72 bp | ACAGGGGCTCGGGAAGGTCACCTTAGTCCTCCAGCCTaGTGGAGGACTCCAATGTCTACCAGCACAGAGTCC | + |
|
Preference number: 3 (lower is better) Translates to: TGAREGHLSPPA*WRTPMSTSTES Trigger: GGACTCTGTGCTGGTAGACATTGGAGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCCGAGCCCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR GCA 72 bp | TTAGTTAGCATCGCTGCGTCCCTCTCAGGAGCGCCATaGCCACTCCCTTCCAAAGCCACCAATATCTTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: LVSIAASLSGAP*PLPSKATNILH Trigger: GTGCAAGATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGATGCTAACTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR GCA 72 bp | TGTCTACCAGCACAGAGTCCACAACTCTCAGAAAAATaGCCTGTTGTGTCCACAAAGAAAAGGGCCCTGGGC | + |
|
Preference number: 3 (lower is better) Translates to: CLPAQSPQLSEK*PVVSTKKRALG Trigger: GCCCAGGGCCCTTTTCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTAGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR-3UTR CAA 90 bp | CTACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAAAGCCACCAATATCTaGCACCATGAAGGAAGGAAT | + |
|
Preference number: 3 (lower is better) Translates to: LPAQSPQLSEKCPVVSTKKATNI*HHEGRN Trigger: ATTCCTTCCTTCATGGTGCAAGATATTGGTGGCTTT...CTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| 3UTR TCA 72 bp | GAATCACGAATAGATTTGTGCATCTCAGTGGAAGACTaGAATGTTCACTGGTGTATACAGAAGACAGGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ESRIDLCISVED*NVHWCIQKTGA Trigger: AGCCCCTGTCTTCTGTATACACCAGTGAACATTTCAGTCTTCCACTGAGATGCACAAATCTATTCGTGATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR TCA 90 bp | TCGCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATAGGGCCCCGGCAGAGCTaGAAGCCCAACAGGAACCAC | + |
|
Preference number: 4 (lower is better) Translates to: SLRPSQERHAHSLPKPPIGPRQS*KPNRNH Trigger: GTGGTTCCTGTTGGGCTTTCAGCTCTGCCGGGGCCC...TATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | TCGCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATATCCTACCCGCGCCACTaGTCTCTTCAGGGCTTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SLRPSQERHAHSLPKPPISYPRH*SLQGFL Trigger: GAGAAAGCCCTGAAGAGAGCAGTGGCGCGGGTAGGA...TATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | CAGAAGACAGGGGCTCGGGAAGGTCACCTTAGTCCTCCAGCCTGCTGGAGGACTTGCTTCCCTTCTGGGTaGCATAGCCCACCACCAACA | + |
|
Preference number: 4 (lower is better) Translates to: QKTGAREGHLSPPACWRTCFPSG*HSPPPT Trigger: TGTTGGTGGTGGGCTATGGCACCCAGAAGGGAAGCA...AGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCCGAGCCCCTGTCTTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | GCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATATCATGCCTCCGTTCTGCTaGACGTATTGGAAGGCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: AASLSGAPCPLPSKATNIMPPFC*TYWKAV Trigger: CACTGCCTTCCAATACGTGCAGCAGAACGGAGGCAT...GATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | ATCGCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATTTCCATAGCTCCCACTaGGTGTCCAGCATTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: IAASLSGAPCPLPSKATNFHSSH*VSSISS Trigger: GGAGGAAATGCTGGACACCCAGTGGGAGCTATGGAA...ATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | CAGAAGACAGGGGCTCGGGAAGGTCACCTTAGTCCTCCAGCCTGCTGGAGGACTTCAATGCCTCCGTTCTaGTGCACGTATTGGAAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: QKTGAREGHLSPPACWRTSMPPF*CTYWKA Trigger: TGCCTTCCAATACGTGCAGCAGAACGGAGGCATTGA...AGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCCGAGCCCCTGTCTTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | CCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATATCTTGCACCCGTATTGGAAGGCAGTaGTCATATAGCCGCCTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: PSQERHAHSLPKPPISCTRIGRQ*SYSRLH Trigger: GTGGAGGCGGCTATATGACCACTGCCTTCCAATACG...GGTGCAAGATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | CATCGCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAAGCCCTGGTTCTTGACTaGAGTAACGTATCCTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HRCVPLRSAMPTPFQSHQALVLD*SNVSFL Trigger: AAGAAAGGATACGTTACTCCAGTCAAGAACCAGGGC...TTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | TCGCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATACAGTCCACAAGATTCTaGGGACTCAGAGCTAAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SLRPSQERHAHSLPKPPIQSTRF*GLRAKS Trigger: ACTCTTAGCTCTGAGTCCCCAGAATCTTGTGGACTG...TATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | GGGGCTCGGGAAGGTCACCTTAGTCCTCCAGCCTGCTGGAGGACTCCAATGTCTCTCCCAAGTGGTTCATaGCCAGTTCATATGTATGGA | + |
|
Preference number: 4 (lower is better) Translates to: GAREGHLSPPACWRTPMSLPSGS*PVHMYG Trigger: TCCATACATATGAACTGGCCATGAACCACTTGGGAG...AGACATTGGAGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCCGAGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | GCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATATCTTATGGGCAGAGATTTaGTTCAGGTTTTTCTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: AASLSGAPCPLPSKATNILWAEI*FRFFSQ Trigger: TTGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAA...GATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR TCA 90 bp | CCCTGGGCAGAGAGAAGGGAAGTAGAGTTGTCACTGGAAGCACCAACGAGAGGATTATACTGCTTCTGGTaGGTCTTCTTCCATAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: PWAERREVELSLEAPTRGLYCFW*VFFHSS Trigger: GGAGCTATGGAAGAAGACTCACCAGAAGCAGTATAA...TCCTCTCGTTGGTGCTTCCAGTGACAACTCTACTTCCCTTCTCTCTGCCCAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | GGGAAGGTCACCTTAGTCCTCCAGCCTGCTGGAGGACTCCAATGTCTACCAGCAGTAAAACTGGAAAGATaGCAAGCTTGCATCGATGGA | + |
|
Preference number: 4 (lower is better) Translates to: GKVTLVLQPAGGLQCLPAVKLER*QACIDG Trigger: TCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTAC...TGCTGGTAGACATTGGAGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | TGGAGGACTCCAATGTCTACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCGAACCACTTCTTCACTaGTCATGTCTCCCAAGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: WRTPMSTSTESTTLRKMPEPLLH*SCLPSG Trigger: ACCACTTGGGAGACATGACCAGTGAAGAAGTGGTTC...GGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTAGACATTGGAGTCCTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR TCA 90 bp | TACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAAGTCCCGTCATCTTCTaGACCACTTCTTCACTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: YQHRVHNSQKNALLCPQRSPVIF*TTSSLV Trigger: GACCAGTGAAGAAGTGGTTCAGAAGATGACGGGACT...TCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR GCA 90 bp | TACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGACATCTTCAGAGTCAATaGCTCCGTTCTGCTGCACGT | + |
|
Preference number: 4 (lower is better) Translates to: YQHRVHNSQKNALLCPQRHLQSQ*LRSAAR Trigger: ACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATG...TCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | TACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAGCCAGTTCATATGTATaGACACCAAGAGAGGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: YQHRVHNSQKNALLCPQRASSYV*TPREAS Trigger: GGAGGCCTCTCTTGGTGTCCATACATATGAACTGGC...TCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | ACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAACCTGCCTTCCCACTCTaGGGTATAGAGAGTGTCATT | + |
|
Preference number: 4 (lower is better) Translates to: TSTESTTLRKMPCCVHKEPAFPL*GIESVI Trigger: AATGACACTCTCTATACCCCAGAGTGGGAAGGCAGG...TTCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | ACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGAATCTTTCGATAGTCGATaGAGTCTGGGACCCTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: TSTESTTLRKMPCCVHKESFDSR*SLGPCL Trigger: AAGGCAGGGTCCCAGACTCCATCGACTATCGAAAGA...TTCTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CCA 90 bp | CTACCAGCACAGAGTCCACAACTCTCAGAAAAATGCCCTGTTGTGTCCACAAAGATCCTGGCCCACATATaGGTAAGCATCTTCAGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LPAQSPQLSEKCPVVSTKILAHI*VSIFRV Trigger: GACTCTGAAGATGCTTACCCATATGTGGGCCAGGAT...CTTTGTGGACACAACAGGGCATTTTTCTGAGAGTTGTGGACTCTGTGCTGGTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | TCGCTGCGTCCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATAGGGAAGCTGGCCATGTaGGTAATGCCGCAGGCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SLRPSQERHAHSLPKPPIGKLAM*VMPQAL Trigger: CAACGCCTGCGGCATTACCAACATGGCCAGCTTCCC...TATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | CAGAAGACAGGGGCTCGGGAAGGTCACCTTAGTCCTCCAGCCTGCTGGAGGACTTTACCAGTTTTCTTCTaGAGTTGGCCCTCCAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: QKTGAREGHLSPPACWRTLPVFF*SWPSRA Trigger: GGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAA...AGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCCGAGCCCCTGTCTTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | CAAGCTTGCATCGATGGACACAGAGATGGGTCCTACCCGCGCCACTaGTCTCTTCAGGGCTTTCTCGTTCCCCACAGGAATCTCTCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: QACIDGHRDGSYPRH*SLQGFLVPHRNLSV Trigger: TACAGAGAGATTCCTGTGGGGAACGAGAAAGCCCTGAAGAGAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | CCCTCTCAGGAGCGCCATGCCCACTCCCTTCCAAAGCCACCAATATCTTGCACCTTAATTATCCAGTGCTaGCTTCCCTTCTGGGTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PSQERHAHSLPKPPISCTLIIQC*LPFWVP Trigger: TGGCACCCAGAAGGGAAGCAAGCACTGGATAATTAA...GGTGCAAGATATTGGTGGCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CCA 90 bp | TGTAAAACTGGAAAGATGCCAAGCTTGCATCGATGGACACAGAGATaGGTCCTACCCGCGCCACTGCTCTCTTCAGGGCTTTCTCGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: CKTGKMPSLHRWTQR*VLPAPLLSSGLSRS Trigger: GGAACGAGAAAGCCCTGAAGAGAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | CCCTGGGCAGAGAGAAGGGAAGTAGAGTTGTCACTGGAAGCACCAACGAGAGGAAAGAGAGCATATCCTTaGTTTCCCCAGCTCTCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: PWAERREVELSLEAPTRGKRAYP*FPQLSP Trigger: GGGAGAGAGCTGGGGAAACAAAGGATATGCTCTCTT...TCCTCTCGTTGGTGCTTCCAGTGACAACTCTACTTCCCTTCTCTCTGCCCAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | GGGAAGGTCACCTTAGTCCTCCAGCCTGCTGGAGGACTCCAATGTCTACCAGCAGTTATGGGCAGAGATTaGCTTCAGGTTTTTCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: GKVTLVLQPAGGLQCLPAVMGRD*LQVFLP Trigger: TGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAAC...TGCTGGTAGACATTGGAGTCCTCCAGCAGGCTGGAGGACTAAGGTGACCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | CTCCCTTCCAAAGCCACCAATATCTTGCACCATGAAGGAAGGAATCTGAGAAGAAGTTTTCTTCTTGAGTaGGCCCTCCAGGGCCCCGGC | + |
|
Preference number: 5 (lower is better) Translates to: LPSKATNILHHEGRNLRRSFLLE*ALQGPG Trigger: GCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACT...TCTTCTCAGATTCCTTCCTTCATGGTGCAAGATATTGGTGGCTTTGGAAGGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | ATCATAGTACACACCTCTGCTGTAAAACTGGAAAGATGCCAAGCTTaGATCGATGGACACAGAGATGGGTCCTACCCGCGCCACTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: IIVHTSAVKLERCQA*IDGHRDGSYPRHCS Trigger: AGAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTGTACTATGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | GTTCCCCACAGGAATCTCTCTGTACCCTCTGCATTTAGCTGCCTTTaGCGTGGCGTTATACATACAACTTTCATCCTGGCCCACATATGG | + |
|
Preference number: 5 (lower is better) Translates to: VPHRNLSVPSAFSCL*RGVIHTTFILAHIW Trigger: CCATATGTGGGCCAGGATGAAAGTTGTATGTATAACGCCACGGCAAAGGCAGCTAAATGCAGAGGGTACAGAGAGATTCCTGTGGGGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | TTTCTCGTTCCCCACAGGAATCTCTCTGTACCCTCTGCATTTAGCTaGCTTTGCCGTGGCGTTATACATACAACTTTCATCCTGGCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: FLVPHRNLSVPSAFS*LCRGVIHTTFILAH Trigger: GTGGGCCAGGATGAAAGTTGTATGTATAACGCCACGGCAAAGGCAGCTAAATGCAGAGGGTACAGAGAGATTCCTGTGGGGAACGAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | AACTTTCATCCTGGCCCACATATGGGTAAGCATCTTCAGAGTCAATaGCTCCGTTCTGCTGCACGTATTGGAAGGCAGTGGTCATATAGC | + |
|
Preference number: 5 (lower is better) Translates to: NFHPGPHMGKHLQSQ*LRSAARIGRQWSYS Trigger: GCTATATGACCACTGCCTTCCAATACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGATGAAAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | CCAGTGCTTGCTTCCCTTCTGGGTGCCATAGCCCACCACCAACACTaGATGGTTCACATTATCACGGTCACAATTTTCATCATAGTACAC | + |
|
Preference number: 5 (lower is better) Translates to: PVLASLLGAIAHHQH*MVHIITVTIFIIVH Trigger: GTGTACTATGATGAAAATTGTGACCGTGATAATGTGAACCATGCAGTGTTGGTGGTGGGCTATGGCACCCAGAAGGGAAGCAAGCACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CCA 90 bp | CTTGACTGGAGTAACGTATCCTTTCTTTCGATAGTCGATGGAGTCTaGGACCCTGCCTTCCCACTCTGGGGTATAGAGAGTGTCATTACT | + |
|
Preference number: 5 (lower is better) Translates to: LDWSNVSFLSIVDGV*DPAFPLWGIESVIT Trigger: AGTAATGACACTCTCTATACCCCAGAGTGGGAAGGCAGGGTCCCAGACTCCATCGACTATCGAAAGAAAGGATACGTTACTCCAGTCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CCA 90 bp | CTTTGCCGTGGCGTTATACATACAACTTTCATCCTGGCCCACATATaGGTAAGCATCTTCAGAGTCAATGCCTCCGTTCTGCTGCACGTA | + |
|
Preference number: 5 (lower is better) Translates to: LCRGVIHTTFILAHI*VSIFRVNASVLLHV Trigger: TACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGATGAAAGTTGTATGTATAACGCCACGGCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | ACAATTTTCATCATAGTACACACCTCTGCTGTAAAACTGGAAAGATaGCAAGCTTGCATCGATGGACACAGAGATGGGTCCTACCCGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TIFIIVHTSAVKLER*QACIDGHRDGSYPR Trigger: GCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTGTACTATGATGAAAATTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CCA 90 bp | ATGGCCAGTTCATATGTATGGACACCAAGAGAGGCCTCCAGGTTATaGGCAGAGATTTGCTTCAGGTTTTTCTCCCAAATTAAACGCCGA | + |
|
Preference number: 5 (lower is better) Translates to: MASSYVWTPREASRL*AEICFRFFSQIKRR Trigger: TCGGCGTTTAATTTGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAACCTGGAGGCCTCTCTTGGTGTCCATACATATGAACTGGCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS-3UTR CAA 90 bp | CTCCCTTCCAAAGCCACCAATATCTTGCACCATGAAGGAAGGAATCTGAGAAGAGTTCTGCTGCACGTATaGGAAGGCAGTGGTCATATA | + |
|
Preference number: 5 (lower is better) Translates to: LPSKATNILHHEGRNLRRVLLHV*EGSGHI Trigger: TATATGACCACTGCCTTCCAATACGTGCAGCAGAAC...TCTTCTCAGATTCCTTCCTTCATGGTGCAAGATATTGGTGGCTTTGGAAGGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | TATGTATGGACACCAAGAGAGGCCTCCAGGTTATGGGCAGAGATTTaGTTCAGGTTTTTCTCCCAAATTAAACGCCGAGAGATTTCATCC | + |
|
Preference number: 5 (lower is better) Translates to: YVWTPREASRLWAEI*FRFFSQIKRREISS Trigger: GGATGAAATCTCTCGGCGTTTAATTTGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAACCTGGAGGCCTCTCTTGGTGTCCATACATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 90 bp | GGTTCACATTATCACGGTCACAATTTTCATCATAGTACACACCTCTaGTGTAAAACTGGAAAGATGCCAAGCTTGCATCGATGGACACAG | + |
|
Preference number: 5 (lower is better) Translates to: GSHYHGHNFHHSTHL*CKTGKMPSLHRWTQ Trigger: CTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTGTACTATGATGAAAATTGTGACCGTGATAATGTGAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 72 bp | ATCGATGGACACAGAGATGGGTCCTACCCGCGCCACTaGTCTCTTCAGGGCTTTCTCGTTCCCCACAGGAAT | + |
|
Preference number: 6 (lower is better) Translates to: IDGHRDGSYPRH*SLQGFLVPHRN Trigger: ATTCCTGTGGGGAACGAGAAAGCCCTGAAGAGAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 72 bp | CCTGGCCCACATATGGGTAAGCATCTTCAGAGTCAATaGCTCCGTTCTGCTGCACGTATTGGAAGGCAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PGPHMGKHLQSQ*LRSAARIGRQW Trigger: CCACTGCCTTCCAATACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 72 bp | CACACCTCTGCTGTAAAACTGGAAAGATGCCAAGCTTaGATCGATGGACACAGAGATGGGTCCTACCCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: HTSAVKLERCQA*IDGHRDGSYPR Trigger: GCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CAA 72 bp | ACACACCTCTGCTGTAAAACTGGAAAGATGCCAAGCTaGCATCGATGGACACAGAGATGGGTCCTACCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: THLCCKTGKMPS*HRWTQRWVLPA Trigger: CGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CAA 90 bp | CATCATAGTACACACCTCTGCTGTAAAACTGGAAAGATGCCAAGCTaGCATCGATGGACACAGAGATGGGTCCTACCCGCGCCACTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: HHSTHLCCKTGKMPS*HRWTQRWVLPAPLL Trigger: GAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTGTACTATGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS TCA 72 bp | GATCGAGAGGGAGGTATTCTGAGTCCCGTCATCTTCTaGACCACTTCTTCACTGGTCATGTCTCCCAAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: DREGGILSPVIF*TTSSLVMSPKW Trigger: CCACTTGGGAGACATGACCAGTGAAGAAGTGGTTCAGAAGATGACGGGACTCAGAATACCTCCCTCTCGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CCA 72 bp | ATGTCTCCCAAGTGGTTCATGGCCAGTTCATATGTATaGACACCAAGAGAGGCCTCCAGGTTATGGGCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: MSPKWFMASSYV*TPREASRLWAE Trigger: CTCTGCCCATAACCTGGAGGCCTCTCTTGGTGTCCATACATATGAACTGGCCATGAACCACTTGGGAGACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CAA 72 bp | TTGGGGAAGCTGGCCATGTTGGTAATGCCGCAGGCGTaGTTCTTATTCCGAGCCAAGAGAGCATATCCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: LGKLAMLVMPQA*FLFRAKRAYPL Trigger: CAAAGGATATGCTCTCTTGGCTCGGAATAAGAACAACGCCTGCGGCATTACCAACATGGCCAGCTTCCCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS TCA 72 bp | GAGATTTCATCCACCTTGCTGTTATACTGCTTCTGGTaGGTCTTCTTCCATAGCTCCCACTGGGTGTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: EISSTLLLYCFW*VFFHSSHWVSS Trigger: GCTGGACACCCAGTGGGAGCTATGGAAGAAGACTCACCAGAAGCAGTATAACAGCAAGGTGGATGAAATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 72 bp | ATCCTTTCTTTCGATAGTCGATGGAGTCTGGGACCCTaGCTTCCCACTCTGGGGTATAGAGAGTGTCATTAC | + |
|
Preference number: 6 (lower is better) Translates to: ILSFDSRWSLGP*LPTLGYRECHY Trigger: GTAATGACACTCTCTATACCCCAGAGTGGGAAGGCAGGGTCCCAGACTCCATCGACTATCGAAAGAAAGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS CCA 72 bp | AGTAACGTATCCTTTCTTTCGATAGTCGATGGAGTCTaGGACCCTGCCTTCCCACTCTGGGGTATAGAGAGT | + |
|
Preference number: 6 (lower is better) Translates to: SNVSFLSIVDGV*DPAFPLWGIES Trigger: ACTCTCTATACCCCAGAGTGGGAAGGCAGGGTCCCAGACTCCATCGACTATCGAAAGAAAGGATACGTTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 72 bp | AGGAATCTCTCTGTACCCTCTGCATTTAGCTGCCTTTaGCGTGGCGTTATACATACAACTTTCATCCTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: RNLSVPSAFSCL*RGVIHTTFILA Trigger: GGCCAGGATGAAAGTTGTATGTATAACGCCACGGCAAAGGCAGCTAAATGCAGAGGGTACAGAGAGATTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||
| CDS GCA 72 bp | TATCACGGTCACAATTTTCATCATAGTACACACCTCTaGTGTAAAACTGGAAAGATGCCAAGCTTGCATCGA | + |
|
Preference number: 6 (lower is better) Translates to: YHGHNFHHSTHL*CKTGKMPSLHR Trigger: TCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGTGTACTATGATGAAAATTGTGACCGTGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015664.5 |
||