Pregenerated sensors for CTSJ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055298Ensembl transcript IDs: ENSMUST00000071526.6, ENSMUST00000224224.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTaGAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCCTTT | + |
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Preference number: 1 (lower is better) Translates to: LATQLLKTLRRDWLL*RWKALNTVSTMSSF Trigger: AAAGGAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| 3UTR TCA 72 bp | CAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTaGAGGTGGAAGGCACTAAACACTGTCTCCACCATG | + |
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Preference number: 3 (lower is better) Translates to: QLLKTLRRDWLL*RWKALNTVSTM Trigger: CATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| 3UTR CCA 72 bp | GTAGAACAAGCAGGTTCCAGATTCCACACCACAAGGTaGCTTTTTAGCCACTCAACTGTTGAAAACACTCAG | + |
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Preference number: 3 (lower is better) Translates to: VEQAGSRFHTTR*LFSHSTVENTQ Trigger: CTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTCTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | AGTTGCCATGCTGTTGTAGAACAAGCAGGTTCCAGATTCCACACCACAAGGTGGATGTGCTTGGGCACCTaGGGCCACTCCAAAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: SCHAVVEQAGSRFHTTRWMCLGT*GHSKAQ Trigger: CTGTGCTTTGGAGTGGCCTCAGGTGCCCAAGCACAT...CCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTCTACAACAGCATGGCAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | CAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTATGTGCTTGGGCACCTaGGGCCACTCCAAAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: QAGSRFHTTRWLFSHSTVMCLGT*GHSKAQ Trigger: CTGTGCTTTGGAGTGGCCTCAGGTGCCCAAGCACAT...AACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | GTTGTAGAACAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACCTCGAATGCTTGGTGTaGAGTACCCGATTGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: VVEQAGSRFHTTRWLFSHLECLV*STRLAA Trigger: GGCTGCCAATCGGGTACTGCACACCAAGCATTCGAG...GTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTCTACAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | AAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGCACCCCAGCTGTTCTTaGTCAGCCAGTAGTTATTAC | + |
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Preference number: 4 (lower is better) Translates to: KQVPDSTPQGGFLATQLLHPSCS*SASSYY Trigger: GTAATAACTACTGGCTGATCAAGAACAGCTGGGGTG...CAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | GAACAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTCACCCCAGCTGTTCTTaGTCAGCCAGTAGTTATTAC | + |
|
Preference number: 4 (lower is better) Translates to: EQAGSRFHTTRWLFSHSTHPSCS*SASSYY Trigger: GTAATAACTACTGGCTGATCAAGAACAGCTGGGGTG...AGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | CTGGTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCCTTCCACAGTGGTTGTTGTaGTCTTTGGCAATCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: LVTVKVEGTKHCLHHVFLPQWLL*SLAICM Trigger: CATGCAGATTGCCAAAGATCACAACAACCACTGTGG...AAGGAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | AGACTGGTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCTTCTATGGCACCAGCTaGAGCAAAAGCCCAACAAGA | + |
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Preference number: 4 (lower is better) Translates to: RLVTVKVEGTKHCLHHVFFYGTS*SKSPTR Trigger: TCTTGTTGGGCTTTTGCTGCAGCTGGTGCCATAGAA...GAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | AGACTGGTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCACTCAGCATCCAATTTaGGATCATGTGCTTGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: RLVTVKVEGTKHCLHHVFTQHPI*DHVLGH Trigger: GTGCCCAAGCACATGATCCCAAATTGGATGCTGAGT...GAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | CCATGCTGTTGTAGAACAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTGTGCAGTACCCGATTaGCAGCCTTTGTTTCCTACA | + |
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Preference number: 4 (lower is better) Translates to: PCCCRTSRFQIPHHKVAFCAVPD*QPLFPT Trigger: TGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACA...AAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTCTACAACAGCATGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGACATACTCGAATGCTTaGTGTGCAGTACCCGATTGG | + |
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Preference number: 4 (lower is better) Translates to: KQVPDSTPQGGFLATQLLTYSNA*CAVPDW Trigger: CCAATCGGGTACTGCACACCAAGCATTCGAGTATGT...CAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | GGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACCATGAGAAGCATCAATaGCAGCAGAGACAGGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: GSRFHTTRWLFSHSTVENHEKHQ*QQRQAQ Trigger: TTGGGCCTGTCTCTGCTGCCATTGATGCTTCTCATG...GTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | AGACTGGTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCAACCTGAAAGAGTCATaGGAAGCATCAATGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RLVTVKVEGTKHCLHHVFNLKES*EASMAA Trigger: TGCTGCCATTGATGCTTCTCATGACTCTTTCAGGTT...GAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | GTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCCTTTGTTTCTATGGCACCAGCTaGAGCAAAAGCCCAACAAGA | + |
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Preference number: 4 (lower is better) Translates to: VTVKVEGTKHCLHHVFLCFYGTS*SKSPTR Trigger: TCTTGTTGGGCTTTTGCTGCAGCTGGTGCCATAGAA...ACAAAGGAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | CAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTCATGTGGGTCTGTCATaGCAGCAGGAATTGGAATAT | + |
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Preference number: 4 (lower is better) Translates to: QAGSRFHTTRWLFSHSTVHVGLS*QQELEY Trigger: ATATTCCAATTCCTGCTGCCATGACAGACCCACATG...AACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | TTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGACATACTCGAATGCTTaGTGTGCAGTACCCGATTGG | + |
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Preference number: 4 (lower is better) Translates to: FHTTRWLFSHSTVENTQETYSNA*CAVPDW Trigger: CCAATCGGGTACTGCACACCAAGCATTCGAGTATGT...CTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | TTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAACCTGAAAGAGTCATaGGAAGCATCAATGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FHTTRWLFSHSTVENTQENLKES*EASMAA Trigger: TGCTGCCATTGATGCTTCTCATGACTCTTTCAGGTT...CTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | TGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTGCCACAGTGGTTGTTGTaGTCTTTGGCAATCTGCATG | + |
|
Preference number: 4 (lower is better) Translates to: WLFSHSTVENTQERLVTVPQWLL*SLAICM Trigger: CATGCAGATTGCCAAAGATCACAACAACCACTGTGG...CACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | TTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTGAAGGTGACTCAGCATCCAATTTaGGATCATGTGCTTGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: FSHSTVENTQERLVTVKVTQHPI*DHVLGH Trigger: GTGCCCAAGCACATGATCCCAAATTGGATGCTGAGT...CACCTTCACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | TTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGATAGATACATGGTTCTaGGCATGTGGGTCTGTCATG | + |
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Preference number: 4 (lower is better) Translates to: FHTTRWLFSHSTVENTQEIDTWF*ACGSVM Trigger: CATGACAGACCCACATGCCCAGAACCATGTATCTAT...CTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | TTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTGAAGGTGTGTGCAGTACCCGATTaGCAGCCTTTGTTTCCTACA | + |
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Preference number: 4 (lower is better) Translates to: FSHSTVENTQERLVTVKVCAVPD*QPLFPT Trigger: TGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACA...CACCTTCACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | CAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACATGTGGGTCTGTCATaGCAGCAGGAATTGGAATAT | + |
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Preference number: 4 (lower is better) Translates to: QGGFLATQLLKTLRRDWLHVGLS*QQELEY Trigger: ATATTCCAATTCCTGCTGCCATGACAGACCCACATG...TAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | CAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTATATATTGGGATAGCTaGCAAGTGAAGCAATTCCAC | + |
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Preference number: 4 (lower is better) Translates to: QAGSRFHTTRWLFSHSTVIYWDS*QVKQFH Trigger: GTGGAATTGCTTCACTTGCCAGCTATCCCAATATAT...AACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | CAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTCTATTCTCCTTGTTGTaGAGTTTGATCATTCTCATG | + |
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Preference number: 4 (lower is better) Translates to: QAGSRFHTTRWLFSHSTVLFSLL*SLIILM Trigger: CATGAGAATGATCAAACTGCACAACAAGGAGAATAG...AACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | TCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTAAACCAATAGATACATaGTTCTGGGCATGTGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SRFHTTRWLFSHSTVENTKPIDT*FWACGS Trigger: AGACCCACATGCCCAGAACCATGTATCTATTGGTTT...AGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | CACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGATATTCATTTTCATGGTaGAGTTATTCTTCCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: HTTRWLFSHSTVENTQERYSFSW*SYSSPD Trigger: GTCTGGGGAAGAATAACTTCACCATGAAAATGAATA...TCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | AGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTGAAGGTGGAATGTCTATTGATTTTCTaGATTCTTCACTGGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SHSTVENTQERLVTVKVECLLIF*ILHWSG Trigger: ACCAGACCAGTGAAGAATTCAGAAAATCAATAGACA...TTCCACCTTCACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | AAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGGATTCACAAAGTAACTaGTGCAATTTGGCTCATAAT | + |
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Preference number: 4 (lower is better) Translates to: KQVPDSTPQGGFLATQLLDSQSN*CNLAHN Trigger: ATTATGAGCCAAATTGCAGCAGTTACTTTGTGAATC...CAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | CACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGAGTAACTGCTGCAATTTaGCTCATAATAAATACCTCC | + |
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Preference number: 4 (lower is better) Translates to: HTTRWLFSHSTVENTQERVTAAI*LIINTS Trigger: GGAGGTATTTATTATGAGCCAAATTGCAGCAGTTAC...TCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | TGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGTGATATATTGGGATAGCTaGCAAGTGAAGCAATTCCAC | + |
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Preference number: 4 (lower is better) Translates to: WLFSHSTVENTQERLVTVIYWDS*QVKQFH Trigger: GTGGAATTGCTTCACTTGCCAGCTATCCCAATATAT...CACAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR TCA 90 bp | TCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTTATTCATTTTCATGGTaGAGTTATTCTTCCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SRFHTTRWLFSHSTVENTYSFSW*SYSSPD Trigger: GTCTGGGGAAGAATAACTTCACCATGAAAATGAATA...AGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | GGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGGATTCACAAAGTAACTaGTGCAATTTGGCTCATAAT | + |
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Preference number: 4 (lower is better) Translates to: GGFLATQLLKTLRRDWLLDSQSN*CNLAHN Trigger: ATTATGAGCCAAATTGCAGCAGTTACTTTGTGAATC...CAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR GCA 90 bp | AGAGAATTTAATTATAGTAGTTGCCATGCTGTTGTAGAACAAGCAGGTTCCAGACTATTCTCCTTGTTGTaGAGTTTGATCATTCTCATG | + |
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Preference number: 4 (lower is better) Translates to: REFNYSSCHAVVEQAGSRLFSLL*SLIILM Trigger: CATGAGAATGATCAAACTGCACAACAAGGAGAATAG...TCTGGAACCTGCTTGTTCTACAACAGCATGGCAACTACTATAATTAAATTCTCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CCA 90 bp | AGTAGAGAATTTAATTATAGTAGTTGCCATGCTGTTGTAGAACAAGCAGGTTCCGTAACTGCTGCAATTTaGCTCATAATAAATACCTCC | + |
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Preference number: 4 (lower is better) Translates to: SREFNYSSCHAVVEQAGSVTAAI*LIINTS Trigger: GGAGGTATTTATTATGAGCCAAATTGCAGCAGTTAC...GGAACCTGCTTGTTCTACAACAGCATGGCAACTACTATAATTAAATTCTCTACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | AACAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGCTTAGAGGGGTGAGGTaGCCAGTTTTCCAGAACATC | + |
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Preference number: 5 (lower is better) Translates to: NKQVPDSTPQGGFLATQLLRGVR*PVFQNI Trigger: GATGTTCTGGAAAACTGGCAACCTCACCCCTCTAAG...CAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS TCA 90 bp | TCTGCATGTAGCCATTCATGCCCCATTCTTCACCCCAGCTGTTCTTaGTCAGCCAGTAGTTATTACCATCTTTCACATCTCCCTCAGATC | + |
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Preference number: 5 (lower is better) Translates to: SACSHSCPILHPSCS*SASSYYHLSHLPQI Trigger: GATCTGAGGGAGATGTGAAAGATGGTAATAACTACTGGCTGATCAAGAACAGCTGGGGTGAAGAATGGGGCATGAATGGCTACATGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | GGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTTGAAAACCCCGATTGGCAGCCTTaGTTTCCTACAGTTTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: GSRFHTTRWLFSHSTVENPDWQP*FPTVLE Trigger: TTCTAAAACTGTAGGAAACAAAGGCTGCCAATCGGG...GTTTTCAACAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | GGTGGCTTTTTAGCCACTCAACTGTTGAAAACACTCAGGAGAGACTGGTTACTGCCCGATTGGCAGCCTTaGTTTCCTACAGTTTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: GGFLATQLLKTLRRDWLLPDWQP*FPTVLE Trigger: TTCTAAAACTGTAGGAAACAAAGGCTGCCAATCGGG...CAGTAACCAGTCTCTCCTGAGTGTTTTCAACAGTTGAGTGGCTAAAAAGCCACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | GAGAGACTGGTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTCATGGCAGCAGGAATaGGAATATTGTCTATTGATT | + |
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Preference number: 5 (lower is better) Translates to: ERLVTVKVEGTKHCLHHVSWQQE*EYCLLI Trigger: AATCAATAGACAATATTCCAATTCCTGCTGCCATGA...GACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAGTCTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | AGTTGCCATGCTGTTGTAGAACAAGCAGGTTCCAGATTCCACACCACAAGGTGGAGTAACTGCTGCAATTaGGCTCATAATAAATACCTC | + |
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Preference number: 5 (lower is better) Translates to: SCHAVVEQAGSRFHTTRWSNCCN*AHNKYL Trigger: GAGGTATTTATTATGAGCCAAATTGCAGCAGTTACT...CCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTCTACAACAGCATGGCAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS TCA 90 bp | GTTTTCTTCCCATACTGCTCTCCTCAGTGCTTCTTCCGGACTGTATaGTTTTGCATATTTAGTCTTCCAGTCTTTCCACTCAGCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: VFFPYCSPQCFFRTV*FCIFSLPVFPLSIQ Trigger: TTGGATGCTGAGTGGAAAGACTGGAAGACTAAATATGCAAAATCATACAGTCCGGAAGAAGCACTGAGGAGAGCAGTATGGGAAGAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071526.6 |
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| CDS-3UTR CAA 90 bp | GAACAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTTCCTTGTTGTGCAGTTaGATCATTCTCATGTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: EQAGSRFHTTRWLFSHSTSLLCS*IILMFS Trigger: AGAAAACATGAGAATGATCAAACTGCACAACAAGGA...AGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | AACAAGCAGGTTCCAGATTCCACACCACAAGGTGGCTTTTTAGCCACTCAACTGTCCTTGTTGTGCAGTTaGATCATTCTCATGTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: NKQVPDSTPQGGFLATQLSLLCS*IILMFS Trigger: AGAAAACATGAGAATGATCAAACTGCACAACAAGGA...CAGTTGAGTGGCTAAAAAGCCACCTTGTGGTGTGGAATCTGGAACCTGCTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS-3UTR CAA 90 bp | CTGGTTACTGTGAAGGTGGAAGGCACTAAACACTGTCTCCACCATGTCTTCCTTTCATGGCAGCAGGAATaGGAATATTGTCTATTGATT | + |
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Preference number: 5 (lower is better) Translates to: LVTVKVEGTKHCLHHVFLSWQQE*EYCLLI Trigger: AATCAATAGACAATATTCCAATTCCTGCTGCCATGA...AAGGAAGACATGGTGGAGACAGTGTTTAGTGCCTTCCACCTTCACAGTAACCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS CCA 72 bp | TCTTTCCACTCAGCATCCAATTTGGGATCATGTGCTTaGGCACCTGAGGCCACTCCAAAGCACAGGATTAAC | + |
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Preference number: 6 (lower is better) Translates to: SFHSASNLGSCA*APEATPKHRIN Trigger: GTTAATCCTGTGCTTTGGAGTGGCCTCAGGTGCCCAAGCACATGATCCCAAATTGGATGCTGAGTGGAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS CAA 72 bp | TCGAATGCTTGGTGTGCAGTACCCGATTGGCAGCCTTaGTTTCCTACAGTTTTAGAACAGTCCAATAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: SNAWCAVPDWQP*FPTVLEQSNRF Trigger: GAACCTATTGGACTGTTCTAAAACTGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACACCAAGCATTCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS TCA 72 bp | CCATACTGCTCTCCTCAGTGCTTCTTCCGGACTGTATaGTTTTGCATATTTAGTCTTCCAGTCTTTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: PYCSPQCFFRTV*FCIFSLPVFPL Trigger: GAGTGGAAAGACTGGAAGACTAAATATGCAAAATCATACAGTCCGGAAGAAGCACTGAGGAGAGCAGTATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071526.6 |
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| CDS CCA 72 bp | AAAACATACTCGAATGCTTGGTGTGCAGTACCCGATTaGCAGCCTTTGTTTCCTACAGTTTTAGAACAGTCC | + |
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Preference number: 6 (lower is better) Translates to: KTYSNAWCAVPD*QPLFPTVLEQS Trigger: GGACTGTTCTAAAACTGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACACCAAGCATTCGAGTATGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS TCA 72 bp | TACTGCTCTCCTCAGTGCTTCTTCCTTCGGACTGTATaGTTTTGCATATTTAGTCTTCCAGTCTTTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: YCSPQCFFLRTV*FCIFSLPVFPL Trigger: GAGTGGAAAGACTGGAAGACTAAATATGCAAAATCATACAGTCCGAAGGAAGAAGCACTGAGGAGAGCAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224224.2 |
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| CDS TCA 72 bp | TATTCTTCCCCAGACTATTCTCCTTGTTGTGCAGTTTaGTCATTCTCATGTTTTCTTCCCATACTGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: YSSPDYSPCCAV*SFSCFLPILLS Trigger: GGAGAGCAGTATGGGAAGAAAACATGAGAATGATCAAACTGCACAACAAGGAGAATAGTCTGGGGAAGAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS GCA 72 bp | ACCTTTATTTTTCAAAACATACTCGAATGCTTGGTGTaGAGTACCCGATTGGCAGCCTTTGTTTCCTACAGT | + |
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Preference number: 6 (lower is better) Translates to: TFIFQNILECLV*STRLAAFVSYS Trigger: ACTGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACACCAAGCATTCGAGTATGTTTTGAAAAATAAAGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS CAA 72 bp | ATGGTGAAGTTATTCTTCCCCAGACTATTCTCCTTGTaGTGCAGTTTGATCATTCTCATGTTTTCTTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: MVKLFFPRLFSL*CSLIILMFSSH Trigger: ATGGGAAGAAAACATGAGAATGATCAAACTGCACAACAAGGAGAATAGTCTGGGGAAGAATAACTTCACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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| CDS CCA 72 bp | CAGAACTGCATGATTCACAAAGTAACTGCTGCAATTTaGCTCATAATAAATACCTCCATTGTAGAACCTGAA | + |
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Preference number: 6 (lower is better) Translates to: QNCMIHKVTAAI*LIINTSIVEPE Trigger: TTCAGGTTCTACAATGGAGGTATTTATTATGAGCCAAATTGCAGCAGTTACTTTGTGAATCATGCAGTTCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071526.6 ENSMUST00000224224.2 |
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