Pregenerated sensors for CTSH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032359Ensembl transcript IDs: ENSMUST00000034915.15, ENSMUST00000123320.8, ENSMUST00000132718.8, ENSMUST00000143172.8, ENSMUST00000185459.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTGCCAATCAGTTGCCCGTGCAGCCGTGGCTTATACCTGAGGAATaGGATAGGAGGCACAAGCAGCCAGGCCACACATGTTCTTCCCAC | + |
|
Preference number: 1 (lower is better) Translates to: SANQLPVQPWLIPEE*DRRHKQPGHTCSSH Trigger: GTGGGAAGAACATGTGTGGCCTGGCTGCTTGTGCCTCCTATCCCATTCCTCAGGTATAAGCCACGGCTGCACGGGCAACTGATTGGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CCA 90 bp | AGTGAGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTaGCATTCTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATC | + |
|
Preference number: 1 (lower is better) Translates to: SERASGWISTQFSPG*HSHRRTSSSLGLPI Trigger: GATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR CCA 90 bp | CCATGGAGGAAGGGTAGGGGCCTGTACCTCGGAGGTAGTTACTTTTaGTGGCTGAGCAATTCTGAGGCTCTGACCAAAGGAATTTGTGTT | + |
|
Preference number: 1 (lower is better) Translates to: PWRKGRGLYLGGSYF*WLSNSEALTKGICV Trigger: AACACAAATTCCTTTGGTCAGAGCCTCAGAATTGCTCAGCCACCAAAAGTAACTACCTCCGAGGTACAGGCCCCTACCCTTCCTCCATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CCA 90 bp | CTGTTCTCCATAGCCAACCGCCAGGACTGCATGGTTTACTTTATCTaGAGTTTTATGACAGGATTTACTGGAGTAGACGCCACTTTTATA | + |
|
Preference number: 1 (lower is better) Translates to: LFSIANRQDCMVYFI*SFMTGFTGVDATFI Trigger: TATAAAAGTGGCGTCTACTCCAGTAAATCCTGTCATAAAACTCCAGATAAAGTAAACCATGCAGTCCTGGCGGTTGGCTATGGAGAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR TCA 90 bp | AACATTCTTGACGAATGCAACAGCTTTTTGGGGGTTGAATCTGCATaGACTATCCTTGCCTATGTAAGGGTAGCTGTCTTCTTCCATGAT | + |
|
Preference number: 1 (lower is better) Translates to: NILDECNSFLGVESA*TILAYVRVAVFFHD Trigger: ATCATGGAAGAAGACAGCTACCCTTACATAGGCAAGGATAGTTCATGCAGATTCAACCCCCAAAAAGCTGTTGCATTCGTCAAGAATGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR TCA 90 bp | GAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCGTGGCTACAGCTCCCAGTACATaGAGAGAGCTGGAAAGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: EGPVPPLVCQSVARAAVATAPST*RELERE Trigger: CTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGT...AGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR GCA 90 bp | GAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCGTGGCTCAATCCACCAGCTGCTaGTCAGCCAAAGACAGCATT | + |
|
Preference number: 2 (lower is better) Translates to: EGPVPPLVCQSVARAAVAQSTSC*SAKDSI Trigger: AATGCTGTCTTTGGCTGAGCAGCAGCTGGTGGATTG...AGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CAA 90 bp | GGCCTGGCTGGGGAGACCTCCTTTGCAGCCATGATTGTTGAAGGCTaGGGCACAATCCACCAGCTGCTGCTCAGCCAAAGACAGCATTTT | + |
|
Preference number: 2 (lower is better) Translates to: GLAGETSFAAMIVEG*GTIHQLLLSQRQHF Trigger: AAAATGCTGTCTTTGGCTGAGCAGCAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGGTCTCCCCAGCCAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCCTGTCTTTAGGCGTCTAGACTCAGGAGTGAGAGGGCCTCTGGGTGGATTTACAGCTCCCAGTACATaGAGAGAGCTGGAAAGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: LPVFRRLDSGVRGPLGGFTAPST*RELERE Trigger: CTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGT...AAATCCACCCAGAGGCCCTCTCACTCCTGAGTCTAGACGCCTAAAGACAGGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR-3UTR CCA 90 bp | CATTACAGCTCCCAGTACATGAAGAGAGCTGGAAAGAGAGACGATTCTAGGTCCTCTTCCTCCAGTCCATaGAGGAAGGGTAGGGGCCTG | + |
|
Preference number: 2 (lower is better) Translates to: HYSSQYMKRAGKRDDSRSSSSSP*RKGRGL Trigger: CAGGCCCCTACCCTTCCTCCATGGACTGGAGGAAGA...GGACCTAGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CCA 90 bp | GAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCGTGGCTCCCCTGATTTTTCACTaGCGAAACAACATTTCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: EGPVPPLVCQSVARAAVAPLIFH*RNNISF Trigger: AAAGGAAATGTTGTTTCGCCAGTGAAAAATCAGGGG...AGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CCA 90 bp | CATTACAGCTCCCAGTACATGAAGAGAGCTGGAAAGAGAGACGATTCTAGGTCCGACCAGTTCCTCCCTTaGTCTGCCAATCAGTTGCCC | + |
|
Preference number: 2 (lower is better) Translates to: HYSSQYMKRAGKRDDSRSDQFLP*SANQLP Trigger: GGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTC...GGACCTAGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGACGAATGCAACAGCTTTTTGGGGGTTGAATCTGCATGAACTATCCTTGCCTCTGCCACAGGCCCCCTaGTTTTTCACTGGCGAAACA | + |
|
Preference number: 2 (lower is better) Translates to: LTNATAFWGLNLHELSLPLPQAP*FFTGET Trigger: TGTTTCGCCAGTGAAAAATCAGGGGGCCTGTGGCAG...AGGCAAGGATAGTTCATGCAGATTCAACCCCCAAAAAGCTGTTGCATTCGTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CCA 90 bp | TTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGACCAGTTCCTCCCATGATGTCACGTGGGTaGGCTTGTCGCTATTCAAGT | + |
|
Preference number: 2 (lower is better) Translates to: FPHNFLQGGILIEGPVPPMMSRG*ACRYSS Trigger: ACTTGAATAGCGACAAGCCCACCCACGTGACATCAT...GGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR-3UTR CCA 90 bp | AGCAGCCAGGCCACACATGTTCTTCCCACGTTCAATGAGGAAGTACCCATTCTCGGTAGTTACTTTTGGTaGCTGAGCAATTCTGAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: SSQATHVLPTFNEEVPILGSYFW*LSNSEA Trigger: AGCCTCAGAATTGCTCAGCCACCAAAAGTAACTACC...GAGAATGGGTACTTCCTCATTGAACGTGGGAAGAACATGTGTGGCCTGGCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGACGAATGCAACAGCTTTTTGGGGGTTGAATCTGCATGAACTATCCTTGCCTCCTCCTTTGCAGCCATaGTTGTTGAAGGCTTGGGCA | + |
|
Preference number: 2 (lower is better) Translates to: LTNATAFWGLNLHELSLPPPLQP*LLKAWA Trigger: TGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGG...AGGCAAGGATAGTTCATGCAGATTCAACCCCCAAAAAGCTGTTGCATTCGTCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR TCA 90 bp | TCCAGTAGAGTAATCCATTCTGTTCTCCATAGCCAACCGCCAGGACTGCATGGTGCAATTCTGAGGCTCTaGCCAAAGGAATTTGTGTTT | + |
|
Preference number: 2 (lower is better) Translates to: SSRVIHSVLHSQPPGLHGAILRL*PKEFVF Trigger: AAACACAAATTCCTTTGGTCAGAGCCTCAGAATTGC...ACCATGCAGTCCTGGCGGTTGGCTATGGAGAACAGAATGGATTACTCTACTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CCA 90 bp | CATTACAGCTCCCAGTACATGAAGAGAGCTGGAAAGAGAGACGATTCTAGGTCCGGAGGTAGTTACTTTTaGTGGCTGAGCAATTCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: HYSSQYMKRAGKRDDSRSGGSYF*WLSNSE Trigger: CTCAGAATTGCTCAGCCACCAAAAGTAACTACCTCC...GGACCTAGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CAA 90 bp | ACAGGGTTGTATAGAGCCACAGCCTCAACCATTGCAGCCTCGTCATaGAGTGTGATGTTGACAACATTCTTGACGAATGCAACAGCTTTT | + |
|
Preference number: 2 (lower is better) Translates to: TGLYRATASTIAASS*SVMLTTFLTNATAF Trigger: AAAAGCTGTTGCATTCGTCAAGAATGTTGTCAACATCACACTCAATGACGAGGCTGCAATGGTTGAGGCTGTGGCTCTATACAACCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR TCA 72 bp | TCGAAGGCCTGGCTGGGGAGACCTCCTTTGCAGCCATaGTTGTTGAAGGCTTGGGCACAATCCACCAGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: SKAWLGRPPLQP*LLKAWAQSTSC Trigger: GCAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGGTCTCCCCAGCCAGGCCTTCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CCA 72 bp | CAGTTGCCCGTGCAGCCGTGGCTTATACCTGAGGAATaGGATAGGAGGCACAAGCAGCCAGGCCACACATGT | + |
|
Preference number: 3 (lower is better) Translates to: QLPVQPWLIPEE*DRRHKQPGHTC Trigger: ACATGTGTGGCCTGGCTGCTTGTGCCTCCTATCCCATTCCTCAGGTATAAGCCACGGCTGCACGGGCAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CCA 72 bp | CTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCGTaGCTTATACCTGAGGAATGGGATAGGAGGCACAAG | + |
|
Preference number: 3 (lower is better) Translates to: LPWSANQLPVQP*LIPEEWDRRHK Trigger: CTTGTGCCTCCTATCCCATTCCTCAGGTATAAGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CAA 90 bp | CTTCCTGTCTTTAGGCGTCTAGACTCAGGAGTGAGAGGGCCTCTGGGTGGATTTGGACCAGTTCCTCCCTaGGTCTGCCAATCAGTTGCC | + |
|
Preference number: 3 (lower is better) Translates to: LPVFRRLDSGVRGPLGGFGPVPP*VCQSVA Trigger: GGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCC...AAATCCACCCAGAGGCCCTCTCACTCCTGAGTCTAGACGCCTAAAGACAGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR GCA 72 bp | ACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTaGAGCCGTGGCTTATACCTGAGGAATGGGATAGGA | + |
|
Preference number: 3 (lower is better) Translates to: TSSSLGLPISCP*SRGLYLRNGIG Trigger: TCCTATCCCATTCCTCAGGTATAAGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CAA 90 bp | CGTCTAGACTCAGGAGTGAGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCGGACCAGTTCCTCCCTaGGTCTGCCAATCAGTTGCC | + |
|
Preference number: 3 (lower is better) Translates to: RLDSGVRGPLGGFPHNFLGPVPP*VCQSVA Trigger: GGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCC...GAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCTCACTCCTGAGTCTAGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR CCA 72 bp | CTGGCGAAACAACATTTCCTTTCTTCCTCCAGTCCATaGAGGAAGGGTAGGGGCCTGTACCTCGGAGGTAGT | + |
|
Preference number: 3 (lower is better) Translates to: LAKQHFLSSSSP*RKGRGLYLGGS Trigger: ACTACCTCCGAGGTACAGGCCCCTACCCTTCCTCCATGGACTGGAGGAAGAAAGGAAATGTTGTTTCGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CCA 72 bp | GCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTaGCATTCTCATCGAAGGACCAGTTCCTCCCTTGGT | + |
|
Preference number: 3 (lower is better) Translates to: ASGWISTQFSPG*HSHRRTSSSLG Trigger: ACCAAGGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR CCA 72 bp | AAGGGTAGGGGCCTGTACCTCGGAGGTAGTTACTTTTaGTGGCTGAGCAATTCTGAGGCTCTGACCAAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: KGRGLYLGGSYF*WLSNSEALTKG Trigger: TCCTTTGGTCAGAGCCTCAGAATTGCTCAGCCACCAAAAGTAACTACCTCCGAGGTACAGGCCCCTACCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR-3UTR CAA 90 bp | TCCAGTAGAGTAATCCATTCTGTTCTCCATAGCCAACCGCCAGGACTGCATGGTATGATTGTTGAAGGCTaGGGCACAATCCACCAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: SSRVIHSVLHSQPPGLHGMIVEG*GTIHQL Trigger: CAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCAT...ACCATGCAGTCCTGGCGGTTGGCTATGGAGAACAGAATGGATTACTCTACTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR TCA 72 bp | GACGAATGCAACAGCTTTTTGGGGGTTGAATCTGCATaGACTATCCTTGCCTATGTAAGGGTAGCTGTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: DECNSFLGVESA*TILAYVRVAVF Trigger: GAAGACAGCTACCCTTACATAGGCAAGGATAGTTCATGCAGATTCAACCCCCAAAAAGCTGTTGCATTCGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CCA 72 bp | ATAGCCAACCGCCAGGACTGCATGGTTTACTTTATCTaGAGTTTTATGACAGGATTTACTGGAGTAGACGCC | + |
|
Preference number: 3 (lower is better) Translates to: IANRQDCMVYFI*SFMTGFTGVDA Trigger: GGCGTCTACTCCAGTAAATCCTGTCATAAAACTCCAGATAAAGTAAACCATGCAGTCCTGGCGGTTGGCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR TCA 72 bp | AACATAGAAAAGGTAACCATTACAGCTCCCAGTACATaGAGAGAGCTGGAAAGAGAGACGATTCTAGGTCCA | + |
|
Preference number: 3 (lower is better) Translates to: NIEKVTITAPST*RELERETILGP Trigger: TGGACCTAGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATGGTTACCTTTTCTATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR CAA 72 bp | CAGGGTGGCATTCTCATCGAAGGACCAGTTCCTCCCTaGGTCTGCCAATCAGTTGCCCGTGCAGCCGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: QGGILIEGPVPP*VCQSVARAAVA Trigger: AGCCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| CDS-3UTR CCA 90 bp | CTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCTCTTCCTCCAGTCCATaGAGGAAGGGTAGGGGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LIEGPVPPLVCQSVARAASSSSP*RKGRGL Trigger: CAGGCCCCTACCCTTCCTCCATGGACTGGAGGAAGA...GGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR TCA 90 bp | CTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCCTCTGGTTGTGGGCTTaGATCTTCCTCCAGTTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: LIEGPVPPLVCQSVARAALWLWA*IFLQLL Trigger: CAACAACTGGAGGAAGATTCAAGCCCACAACCAGAG...GGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| 3UTR CAA 72 bp | GGGGAGACCTCCTTTGCAGCCATGATTGTTGAAGGCTaGGGCACAATCCACCAGCTGCTGCTCAGCCAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: GETSFAAMIVEG*GTIHQLLLSQR Trigger: TCTTTGGCTGAGCAGCAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGGTCTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| CDS-3UTR CCA 90 bp | GAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGATGTACTCGAAGGCCTaGCTGGGGAGACCTCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: EGLWVDFHTIFSRVAFSSMYSKA*LGRPPL Trigger: CAAAGGAGGTCTCCCCAGCCAGGCCTTCGAGTACAT...CGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR GCA 90 bp | TCAGGAGTGAGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCGCCAACCGCCAGGACTaGATGGTTTACTTTATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SGVRGPLGGFPHNFLQGGANRQD*MVYFIW Trigger: CCAGATAAAGTAAACCATGCAGTCCTGGCGGTTGGC...GCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCTCACTCCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR TCA 90 bp | TTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGACCAGTTCCTCCCTCTGCCACAGGCCCCCTaGTTTTTCACTGGCGAAACA | + |
|
Preference number: 4 (lower is better) Translates to: FHTIFSRVAFSSKDQFLPLPQAP*FFTGET Trigger: TGTTTCGCCAGTGAAAAATCAGGGGGCCTGTGGCAG...AGGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR TCA 90 bp | AGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCCCTCCTTTGCAGCCATaGTTGTTGAAGGCTTGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RGPLGGFPHNFLQGGILIPPLQP*LLKAWA Trigger: TGCCCAAGCCTTCAACAATCATGGCTGCAAAGGAGG...GATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CCA 90 bp | TCTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCGGTAGTTACTTTTGGTaGCTGAGCAATTCTGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: SHRRTSSSLGLPISCPCSGSYFW*LSNSEA Trigger: AGCCTCAGAATTGCTCAGCCACCAAAAGTAACTACC...GCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CCA 90 bp | TCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCGTGGAATGCAACAGCTTTTTaGGGGTTGAATCTGCATGAA | + |
|
Preference number: 4 (lower is better) Translates to: SKDQFLPWSANQLPVQPWNATAF*GLNLHE Trigger: TTCATGCAGATTCAACCCCCAAAAAGCTGTTGCATT...CCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR GCA 90 bp | CATTCTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCTTGTTGGCAAACATCTaGAGTCTGTGGTTGTACTCC | + |
|
Preference number: 4 (lower is better) Translates to: HSHRRTSSSLGLPISCPCLLANI*SLWLYS Trigger: GGAGTACAACCACAGACTGCAGATGTTTGCCAACAA...GCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR GCA 90 bp | CGTCTAGACTCAGGAGTGAGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAATCCACCAGCTGCTaGTCAGCCAAAGACAGCATT | + |
|
Preference number: 4 (lower is better) Translates to: RLDSGVRGPLGGFPHNFLQSTSC*SAKDSI Trigger: AATGCTGTCTTTGGCTGAGCAGCAGCTGGTGGATTG...GAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCTCACTCCTGAGTCTAGACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| 3UTR CAA 72 bp | AAATCTTCAGTCACCTCAAAGGCGAAGCTCACAGGGTaGTATAGAGCCACAGCCTCAACCATTGCAGCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: KSSVTSKAKLTG*YRATASTIAAS Trigger: CGAGGCTGCAATGGTTGAGGCTGTGGCTCTATACAACCCTGTGAGCTTCGCCTTTGAGGTGACTGAAGATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| CDS-3UTR TCA 90 bp | CTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCATCCATGACTTAAAGTaGAACTTTTCTATGGCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LIEGPVPPLVCQSVARAAIHDLK*NFSMAF Trigger: GAACGCCATAGAAAAGTTTCACTTTAAGTCATGGAT...GGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| CDS-3UTR TCA 90 bp | CTTCCTGTCTTTAGGCGTCTAGACTCAGGAGTGAGAGGGCCTCTGGGTGGATTTAGCTGTCTTCTTCCATaGTGCCCTTGTTGTATAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LPVFRRLDSGVRGPLGGFSCLLP*CPCCIG Trigger: TCCTATACAACAAGGGCATCATGGAAGAAGACAGCT...AAATCCACCCAGAGGCCCTCTCACTCCTGAGTCTAGACGCCTAAAGACAGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR GCA 90 bp | GTGGCATTCTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCAACATTCTTGACGAATaGAACAGCTTTTTGGGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VAFSSKDQFLPWSANQLPNILDE*NSFLGV Trigger: AACCCCCAAAAAGCTGTTGCATTCGTCAAGAATGTT...GGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAATGCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CCA 90 bp | GGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGGAGGTAGTTACTTTTaGTGGCTGAGCAATTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: GLWVDFHTIFSRVAFSSKGGSYF*WLSNSE Trigger: CTCAGAATTGCTCAGCCACCAAAAGTAACTACCTCC...CTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CCA 90 bp | AGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCACCGCCAGGACTGCATaGTTTACTTTATCTGGAGTT | + |
|
Preference number: 4 (lower is better) Translates to: RGPLGGFPHNFLQGGILITARTA*FTLSGV Trigger: AACTCCAGATAAAGTAAACCATGCAGTCCTGGCGGT...GATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CCA 90 bp | TGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGACCAGTCTTCCTCCAGTTGTTaGCAAACATCTGCAGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: WVDFHTIFSRVAFSSKDQSSSSC*QTSAVC Trigger: ACAGACTGCAGATGTTTGCCAACAACTGGAGGAAGA...CTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR TCA 90 bp | GTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGACCAGTTCCAGCTTTTTGGGGGTTaGATCTGCATGAACTATCCT | + |
|
Preference number: 4 (lower is better) Translates to: VDFHTIFSRVAFSSKDQFQLFGG*ICMNYP Trigger: AGGATAGTTCATGCAGATTCAACCCCCAAAAAGCTG...GAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CCA 90 bp | AGAGGGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCCCCCTGATTTTTCACTaGCGAAACAACATTTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: RGPLGGFPHNFLQGGILIPLIFH*RNNISF Trigger: AAAGGAAATGTTGTTTCGCCAGTGAAAAATCAGGGG...GATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCCCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR TCA 90 bp | GGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGATCCATGACTTAAAGTaGAACTTTTCTATGGCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: GLWVDFHTIFSRVAFSSKIHDLK*NFSMAF Trigger: GAACGCCATAGAAAAGTTTCACTTTAAGTCATGGAT...CTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034915.15 ENSMUST00000123320.8 |
||
| 3UTR CAA 72 bp | GCCTCAACCATTGCAGCCTCGTCATTGAGTGTGATGTaGACAACATTCTTGACGAATGCAACAGCTTTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: ASTIAASSLSVM*TTFLTNATAFW Trigger: CCAAAAAGCTGTTGCATTCGTCAAGAATGTTGTCAACATCACACTCAATGACGAGGCTGCAATGGTTGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| 3UTR CAA 72 bp | TATAGAGCCACAGCCTCAACCATTGCAGCCTCGTCATaGAGTGTGATGTTGACAACATTCTTGACGAATGCA | + |
|
Preference number: 4 (lower is better) Translates to: YRATASTIAASS*SVMLTTFLTNA Trigger: TGCATTCGTCAAGAATGTTGTCAACATCACACTCAATGACGAGGCTGCAATGGTTGAGGCTGTGGCTCTATA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| CDS-3UTR TCA 90 bp | GGTAACCATTACAGCTCCCAGTACATGAAGAGAGCTGGAAAGAGAGACGATTCTAGCAAAGCTCATATCTaGAAACTGGTTCAATGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: GNHYSSQYMKRAGKRDDSSKAHI*KLVQCH Trigger: ATGGCATTGAACCAGTTTTCAGATATGAGCTTTGCT...AGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATGGTTACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR TCA 90 bp | GGTAACCATTACAGCTCCCAGTACATGAAGAGAGCTGGAAAGAGAGACGATTCTCCACTGTTTCATCCATaGCTTAAAGTGAAACTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GNHYSSQYMKRAGKRDDSPLFHP*LKVKLF Trigger: GAAAAGTTTCACTTTAAGTCATGGATGAAACAGTGG...AGAATCGTCTCTCTTTCCAGCTCTCTTCATGTACTGGGAGCTGTAATGGTTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123320.8 |
||
| CDS-3UTR TCA 90 bp | ACTGTGTGTTTATTGAATACACAACATAGAAAAGGTAACCATTACAGCTCCCAGGCAATTCTGAGGCTCTaGCCAAAGGAATTTGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: TVCLLNTQHRKGNHYSSQAILRL*PKEFVF Trigger: AAACACAAATTCCTTTGGTCAGAGCCTCAGAATTGC...CTGGGAGCTGTAATGGTTACCTTTTCTATGTTGTGTATTCAATAAACACACAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CAA 90 bp | TCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAGCCGTGGATGATTGTTGAAGGCTaGGGCACAATCCACCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SKDQFLPWSANQLPVQPWMIVEG*GTIHQL Trigger: CAGCTGGTGGATTGTGCCCAAGCCTTCAACAATCAT...CCACGGCTGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CAA 90 bp | GTGGCATTCTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCCCTCTGGTTGTGGGCTaGAATCTTCCTCCAGTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: VAFSSKDQFLPWSANQLPPLVVG*NLPPVV Trigger: AACAACTGGAGGAAGATTCAAGCCCACAACCAGAGG...GGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAATGCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CAA 90 bp | GCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGGCGAAGCTCACAGGGTaGTATAGAGCCACAGCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: ASGWISTQFSPGWHSHRRAKLTG*YRATAS Trigger: TGAGGCTGTGGCTCTATACAACCCTGTGAGCTTCGC...CCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS CCA 90 bp | ATGTGTGGTTCCTCTGGTTGTGGGCTTGAATCTTCCTCCAGTTGTTaGCAAACATCTGCAGTCTGTGGTTGTACTCCACCGAGCTGTACG | + |
|
Preference number: 5 (lower is better) Translates to: MCGSSGCGLESSSSC*QTSAVCGCTPPSCT Trigger: CGTACAGCTCGGTGGAGTACAACCACAGACTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAACCACACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034915.15 ENSMUST00000132718.8 ENSMUST00000185459.2 |
||
| CDS-3UTR CAA 90 bp | ATTCTCATCGAAGGACCAGTTCCTCCCTTGGTCTGCCAATCAGTTGCCCGTGCAATCTTCCTCCAGTTGTaGGCAAACATCTGCAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: ILIEGPVPPLVCQSVARAIFLQL*ANICSL Trigger: CAGACTGCAGATGTTTGCCAACAACTGGAGGAAGAT...TGCACGGGCAACTGATTGGCAGACCAAGGGAGGAACTGGTCCTTCGATGAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CAA 90 bp | GGCCTCTGGGTGGATTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGACAGCTTTTTGGGGGTaGAATCTGCATGAACTATCC | + |
|
Preference number: 5 (lower is better) Translates to: GLWVDFHTIFSRVAFSSKTAFWG*NLHELS Trigger: GGATAGTTCATGCAGATTCAACCCCCAAAAAGCTGT...CTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAATCCACCCAGAGGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS-3UTR CAA 90 bp | TTTCCACACAATTTTCTCCAGGGTGGCATTCTCATCGAAGGACCAGTTCCTCCCATTGCAGCCTCGTCATaGAGTGTGATGTTGACAACA | + |
|
Preference number: 5 (lower is better) Translates to: FPHNFLQGGILIEGPVPPIAASS*SVMLTT Trigger: TGTTGTCAACATCACACTCAATGACGAGGCTGCAAT...GGGAGGAACTGGTCCTTCGATGAGAATGCCACCCTGGAGAAAATTGTGTGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034915.15 |
||
| CDS TCA 90 bp | TGGTTCAATGCCATTTTAAATGTGTGGTTCCTCTGGTTGTGGGCTTaGATCTTCCTCCAGTTGTTGGCAAACATCTGCAGTCTGTGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: WFNAILNVWFLWLWA*IFLQLLANICSLWL Trigger: CAACCACAGACTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAACCACACATTTAAAATGGCATTGAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034915.15 ENSMUST00000132718.8 ENSMUST00000185459.2 |
||
| CDS TCA 72 bp | CTCGGCGCTCACTGCCCGGTCCCACCGAGTGCCCTCTaGGCCCAGCCCCCAACAGGCATTTGGGTTGCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LGAHCPVPPSAL*AQPPTGIWVAS Trigger: GGAAGCAACCCAAATGCCTGTTGGGGGCTGGGCTCAGAGGGCACTCGGTGGGACCGGGCAGTGAGCGCCGAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132718.8 |
||
| CDS GCA 72 bp | CCCACATCTCGGCGCTCACTGCCCGGTCCCACCGAGTaGCCTCTGAGCCCAGCCCCCAACAGGCATTTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: PTSRRSLPGPTE*PLSPAPNRHLG Trigger: ACCCAAATGCCTGTTGGGGGCTGGGCTCAGAGGGCACTCGGTGGGACCGGGCAGTGAGCGCCGAGATGTGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132718.8 |
||
| CDS CAA 90 bp | CTGGTTCAATGCCATTTTAAATGTGTGGTTCCTCTGGTTGTGGGCTaGAATCTTCCTCCAGTTGTTGGCAAACATCTGCAGTCTGTGGTT | + |
|
Preference number: 6 (lower is better) Translates to: LVQCHFKCVVPLVVG*NLPPVVGKHLQSVV Trigger: AACCACAGACTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAACCACACATTTAAAATGGCATTGAACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034915.15 ENSMUST00000132718.8 ENSMUST00000185459.2 |
||
| CDS TCA 72 bp | GCCATTTTAAATGTGTGGTTCCTCTGGTTGTGGGCTTaGATCTTCCTCCAGTTGTTGGCAAACATCTGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: AILNVWFLWLWA*IFLQLLANICS Trigger: ACTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAACCACACATTTAAAATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034915.15 ENSMUST00000132718.8 ENSMUST00000185459.2 |
||
| CDS TCA 72 bp | GATGTCAAATGTCCCTGTTTCATCCATGACTTAAAGTaGAACTTTTCTATGGCGTTCACGGTCAGCTCGGCG | + |
|
Preference number: 6 (lower is better) Translates to: DVKCPCFIHDLK*NFSMAFTVSSA Trigger: CGCCGAGCTGACCGTGAACGCCATAGAAAAGTTTCACTTTAAGTCATGGATGAAACAGGGACATTTGACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143172.8 |
||
| CDS CAA 72 bp | TGCCATTTTAAATGTGTGGTTCCTCTGGTTGTGGGCTaGAATCTTCCTCCAGTTGTTGGCAAACATCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: CHFKCVVPLVVG*NLPPVVGKHLQ Trigger: CTGCAGATGTTTGCCAACAACTGGAGGAAGATTCAAGCCCACAACCAGAGGAACCACACATTTAAAATGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034915.15 ENSMUST00000132718.8 ENSMUST00000185459.2 |
||
| CDS TCA 72 bp | CACCGAGCTGTACGTCTTTTGATGCTGTTTCATCCATaGCTTAAAGTGAAACTTTTCTATGGCGTTCACGGT | + |
|
Preference number: 6 (lower is better) Translates to: HRAVRLLMLFHP*LKVKLFYGVHG Trigger: ACCGTGAACGCCATAGAAAAGTTTCACTTTAAGTCATGGATGAAACAGCATCAAAAGACGTACAGCTCGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034915.15 ENSMUST00000132718.8 ENSMUST00000185459.2 |
||