Pregenerated sensors for CTSF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000083282Ensembl transcript IDs: ENSMUST00000119694.3, ENSMUST00000237011.2, ENSMUST00000237504.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTTCAGATaGGCACTAGAGGAAAGAGGGACGAAGGGGCCCAGGGCCCAGGGC | + |
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Preference number: 1 (lower is better) Translates to: PSYHNRTQVQLGNFR*ALEERGTKGPRAQG Trigger: GCCCTGGGCCCTGGGCCCCTTCGTCCCTCTTTCCTCTAGTGCTCATCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR CCA 90 bp | CTCTTTATTGCCCTTAGAGAAGGCCGGTCACAACTTTCCTGGATGTaGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGAGCACCA | + |
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Preference number: 1 (lower is better) Translates to: LFIALREGRSQLSWM*KGTRKLTASDRGAP Trigger: TGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGCAATAAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR CCA 90 bp | GGCTACCTCTTTATTGCCCTTAGAGAAGGCCGGTCACAACTTTCCTaGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGA | + |
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Preference number: 1 (lower is better) Translates to: GYLFIALREGRSQLS*MWKGTRKLTASDRG Trigger: TCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGCAATAAAGAGGTAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR-3UTR TCA 90 bp | CACCTCAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTGCCCAGGGCTCACCGTaGGGTCCAAAGTGCCCGGCC | + |
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Preference number: 2 (lower is better) Translates to: HLRILLATTIGHRCSWGTAQGSP*GPKCPA Trigger: GGCCGGGCACTTTGGACCTCACGGTGAGCCCTGGGC...AGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTGAGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR-3UTR TCA 90 bp | CAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTGCTGAGGACAGAGGAAGGGCCTGGGCATaGGTCGGGCTAAGGAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: QHQTEEHQSKKTEPAEDRGRAWA*VGLRKG Trigger: CCCCTTCCTTAGCCCGACTCATGCCCAGGCCCTTCC...TCTGTCCTCAGCAGGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR-3UTR TCA 90 bp | CCGGTCACAACTTTCCTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACTGGGGAACTTCAGATaGGCACTAGAGGAAAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: PVTTFLDVERDQKTDSIRLGNFR*ALEERG Trigger: CCCTCTTTCCTCTAGTGCTCATCTGAAGTTCCCCAG...TCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR-3UTR GCA 90 bp | TACCTCTTTATTGCCCTTAGAGAAGGCCGGTCACAACTTTCCTGGATGTGGAAAACAATCGGACACAGGTaGAGCTGGGGAACTTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: YLFIALREGRSQLSWMWKTIGHR*SWGTSD Trigger: ATCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTGT...TTTCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGCAATAAAGAGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR TCA 72 bp | CACAATCGGACACAGGTGCAGCTGGGGAACTTCAGATaGGCACTAGAGGAAAGAGGGACGAAGGGGCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: HNRTQVQLGNFR*ALEERGTKGPR Trigger: CCTGGGCCCCTTCGTCCCTCTTTCCTCTAGTGCTCATCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR CCA 72 bp | GCCCTTAGAGAAGGCCGGTCACAACTTTCCTGGATGTaGAAAGGGACCAGAAAACTGACAGCATCAGACCGA | + |
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Preference number: 3 (lower is better) Translates to: ALREGRSQLSWM*KGTRKLTASDR Trigger: TCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR TCA 72 bp | CACAACTTTCCTGGATGTGGAAAGGGACCAGAAAACTaGCAGCATCAGACCGAGGAGCACCAAAGCAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: HNFPGCGKGPEN*QHQTEEHQSKK Trigger: CTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| 3UTR CCA 72 bp | TTTATTGCCCTTAGAGAAGGCCGGTCACAACTTTCCTaGATGTGGAAAGGGACCAGAAAACTGACAGCATCA | + |
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Preference number: 3 (lower is better) Translates to: FIALREGRSQLS*MWKGTRKLTAS Trigger: TGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGCAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | AGTGCCCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGCATGCCGCGGTCCAGGGCCTaGATCTTCTGTGCTCGTATC | + |
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Preference number: 4 (lower is better) Translates to: SARPSANQLCLVRKGLGMPRSRA*IFCARI Trigger: GATACGAGCACAGAAGATTCAGGCCCTGGACCGCGG...CATGCCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGGGCACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | TGCCCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGCATGAGACACAGCATGGTCGATaGACCAAGGGCTGCAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: CPALSQPALSREEGPGHETQHGR*TKGCRG Trigger: CCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGT...CTCATGCCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGGGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | GGCCCAGGGCCCAGGGCTCACCGTGAGGTCCAAAGTGCCCGGCCCTCAGCCAACTTTTGCCATCTGTGCTaGGAAGTTGCAGGTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: GPGPRAHREVQSARPSANFCHLC*EVAGLN Trigger: GTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAA...GTTGGCTGAGGGCCGGGCACTTTGGACCTCACGGTGAGCCCTGGGCCCTGGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | AGTGCCCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGCATGTCAGTTCACCACGGCTaGGCTGGCCATGGTATTCAC | + |
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Preference number: 4 (lower is better) Translates to: SARPSANQLCLVRKGLGMSVHHG*AGHGIH Trigger: GTGAATACCATGGCCAGCTCAGCCGTGGTGAACTGA...CATGCCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGGGCACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR GCA 90 bp | GGCCCAGGGCCCAGGGCTCACCGTGAGGTCCAAAGTGCCCGGCCCTCAGCCAACCTGGACTCATCTTCCTaGCAGACTCCTTCTGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: GPGPRAHREVQSARPSANLDSSS*QTPSVR Trigger: TCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAG...GTTGGCTGAGGGCCGGGCACTTTGGACCTCACGGTGAGCCCTGGGCCCTGGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | CCAAAGTGCCCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGTGCCCCAGCTGTTCTTaGTGGCCCAGTAAGGAATGT | + |
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Preference number: 4 (lower is better) Translates to: PKCPALSQPALSREEGPGCPSCS*WPSKEC Trigger: ACATTCCTTACTGGGCCATCAAGAACAGCTGGGGCA...CCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGGGCACTTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR GCA 90 bp | GTGAGGAAGGGCCTGGGCATGAGTCGGGCTAAGGAAGGGGCCACTGTGACAACATCCCATACTGAGCTGTaGCGCGGTCCAGGGCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: VRKGLGMSRAKEGATVTTSHTEL*RGPGPE Trigger: TTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGA...TGTTGTCACAGTGGCCCCTTCCTTAGCCCGACTCATGCCCAGGCCCTTCCTCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | CAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTGCTGAGGACAGAGAGAACAGAGAGCCCTaGCCGGCCCGGCGGACGCGT | + |
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Preference number: 4 (lower is better) Translates to: QHQTEEHQSKKTEPAEDRENREP*PARRTR Trigger: ACGCGTCCGCCGGGCCGGCCAGGGCTCTCTGTTCTC...TCTGTCCTCAGCAGGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | CACCTCAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTCAAGAGCTCCTGCTCTaGCAGGGAGAGCAGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: HLRILLATTIGHRCSWGTQELLL*QGEQSP Trigger: GGGACTCTGCTCTCCCTGTCAGAGCAGGAGCTCTTG...AGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTGAGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | TGCCCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGCATGAGCCGGCTCAGCTCCACTaGATCATTGATGTAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: CPALSQPALSREEGPGHEPAQLH*IIDVDF Trigger: AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGG...CTCATGCCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGGGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | CCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGCATGAGTCGATTTATGGACTTGGCTaGACTCATCTTCCTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: PALSQPALSREEGPGHESIYGLG*THLPAR Trigger: TCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAAT...CGACTCATGCCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | AGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTGCTGAGGACAGATCTAGTTCCTCCACGTTGCCTGTaGCAGAAAAGGCCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RPRSTKAKRQSLLRTDLVPPRCL*QKRPSR Trigger: CCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGG...AACTAGATCTGTCCTCAGCAGGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | CAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTTCAGAGGCGTTAATGGCAACTaGGATAGGTCCTTTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: QDPPSYHNRTQVQLGNFRGVNGN*DRSFLG Trigger: GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCC...TCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | CAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTGCTGAGGACAGATTCACAGAGAAGTCCTaGGGCAGGGGATCCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: QHQTEEHQSKKTEPAEDRFTEKS*GRGSLS Trigger: GGACAAGGATCCCCTGCCCCAGGACTTCTCTGTGAA...TCTGTCCTCAGCAGGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | CAATCGGACACAGGTGCAGCTGGGGAACTTCAGATGAGCACTAGAGGAAAGAGGGGTTCTTCACTTCAGTaGCAGCCCCTTTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QSDTGAAGELQMSTRGKRGSSLQ*QPLSSS Trigger: GGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACC...CCTCTTTCCTCTAGTGCTCATCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | TGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAAGGACCTTGGCATTCACTaGGCTACAGTCCCTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: WMWKGTRKLTASDRGAPKDLGIH*ATVPPQ Trigger: CTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTC...CTTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR GCA 90 bp | CACCTCAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTCAAATTCTTTATGGCTaGATAGGCGTTGGAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: HLRILLATTIGHRCSWGTQILYG*IGVGGQ Trigger: TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTG...AGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTGAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | CCGGTCACAACTTTCCTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGAGTGGCTCCTCTAGTGTaGCTTCCAGGGAGAACAGAG | + |
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Preference number: 4 (lower is better) Translates to: PVTTFLDVERDQKTDSIRVAPLV*LPGRTE Trigger: CTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCAC...TCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | CCGGTCACAACTTTCCTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGAGAGATAGGTCCTTTCTaGGCCAGCCAGGCTGCTATC | + |
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Preference number: 4 (lower is better) Translates to: PVTTFLDVERDQKTDSIREIGPF*ASQAAI Trigger: GATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTC...TCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR GCA 90 bp | CCGGTCACAACTTTCCTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGAAGCAGGAGCCACACATaGCCTGGTTCTTCACTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PVTTFLDVERDQKTDSIRSRSHT*PGSSLQ Trigger: CTGAAGTGAAGAACCAGGGCATGTGTGGCTCCTGCT...TCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | CAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTTCAGAGATCATTTATGGACTTaGCTGGACTCATCTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: QDPPSYHNRTQVQLGNFRDHLWT*LDSSSC Trigger: GCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATC...TCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR GCA 90 bp | ACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTCTGTGCTGAGAAGTTaGAGGTCTGAACATGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: TRKLTASDRGAPKQKDRASVLRS*RSEHGP Trigger: AGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGA...GGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | TGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAAGACAGTCAATCGCCACTaGGCTTCTTCCCTTGATTCA | + |
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Preference number: 4 (lower is better) Translates to: WMWKGTRKLTASDRGAPKTVNRH*ASSLDS Trigger: TGAATCAAGGGAAGAAGCCCAGTGGCGATTGACTGT...CTTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | GCTACCTCTTTATTGCCCTTAGAGAAGGCCGGTCACAACTTTCCTGGATGTGGAGGGGATTCAGGTAGATaGTGTGGAATTCCTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: ATSLLPLEKAGHNFPGCGGDSGR*CGIPPL Trigger: CAGAGGAGGAATTCCACACCATCTACCTGAATCCCC...TCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGCAATAAAGAGGTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | ACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCCTCCCAAATTCTTTATaGCTGCATAGGCGTTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TRKLTASDRGAPKQKDRALPNSL*LHRRWR Trigger: CCTCCAACGCCTATGCAGCCATAAAGAATTTGGGAG...GGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | CTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAAGCTCCACTGAATCATTaGTGTAGACTTTTGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: LDVERDQKTDSIRPRSTKAPLNH*CRLLPS Trigger: AGATGGCAAAAGTCTACATCAATGATTCAGTGGAGC...TTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CCA 90 bp | GCTACCTCTTTATTGCCCTTAGAGAAGGCCGGTCACAACTTTCCTGGATGTGGAGGGCAAGATCATTTATaGACTTGGCTGGACTCATCT | + |
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Preference number: 4 (lower is better) Translates to: ATSLLPLEKAGHNFPGCGGQDHL*TWLDSS Trigger: AGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCC...TCCACATCCAGGAAAGTTGTGACCGGCCTTCTCTAAGGGCAATAAAGAGGTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR TCA 90 bp | CCGGTCACAACTTTCCTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACAACAATGGAAGGAATaGGCTGAAAGTCGCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVTTFLDVERDQKTDSIRQQWKE*AESRIS Trigger: AGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTG...TCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGTTGTGACCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR GCA 90 bp | ACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCGGCCTGAATCTTCTGTaGTCGTATCATATTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: TRKLTASDRGAPKQKDRAGLNLL*SYHISC Trigger: GCAAGAAATATGATACGAGCACAGAAGATTCAGGCC...GGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 90 bp | TCCTGCTCTGACAGGGAGAGCAGAGTCCCCCGGTTCAGGAACCACTaGCCCTCCACGTTGCCTGTGACAGAAAAGGCCCAGCAGGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SCSDRESRVPRFRNH*PSTLPVTEKAQQEP Trigger: TGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | CCGGCCCTCAGCCAACCAGCTCTGTCTCGTGAGGAAGGGCCTGGGCATGAGTCGCAGGCCTTGTCCACCTaGTCACAATCCAAGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: PALSQPALSREEGPGHESQALST*SQSKSS Trigger: GGAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTG...CGACTCATGCCCAGGCCCTTCCTCACGAGACAGAGCTGGTTGGCTGAGGGCCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 90 bp | GCAGAGTCCCCCGGTTCAGGAACCACTGGCCCTCCACGTTGCCTGTaGCAGAAAAGGCCCAGCAGGAGCCACACATGCCCTGGTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: AESPGSGTTGPPRCL*QKRPSRSHTCPGSS Trigger: TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | CAGCATCAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTGCTGAGGACAGACTCCTAGCACGGCCCTaGTCCCCGCAGCACGGCCGT | + |
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Preference number: 5 (lower is better) Translates to: QHQTEEHQSKKTEPAEDRLLARP*SPQHGR Trigger: ACGGCCGTGCTGCGGGGACAAGGGCCGTGCTAGGAG...TCTGTCCTCAGCAGGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTGATGCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 90 bp | CAACACAGCATGGTCGATGAACCAAGGGCTGCAGAGGGGCCGGAATaGGTGAGCAATCCCGTGGCGATAGAACTGCATGCCGAAGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: QHSMVDEPRAAEGPE*VSNPVAIELHAEGV Trigger: AACGCCTTCGGCATGCAGTTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | GTGAGGAAGGGCCTGGGCATGAGTCGGGCTAAGGAAGGGGCCACTGTGACAACAGTGGTCATGAAGTCCTaGAAGAGTGGAGCCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: VRKGLGMSRAKEGATVTTVVMKS*KSGAIF Trigger: GAAGATGGCTCCACTCTTCAAGGACTTCATGACCAC...TGTTGTCACAGTGGCCCCTTCCTTAGCCCGACTCATGCCCAGGCCCTTCCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | CAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTTCAGACCACCCAAGCAGGCCTaGTCCACCTTGTCACAATCC | + |
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Preference number: 5 (lower is better) Translates to: QDPPSYHNRTQVQLGNFRPPKQA*STLSQS Trigger: GGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGG...TCTGAAGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | CAGACCGAGGAGCACCAAAGCAAAAAGACAGAGCCTGCTGAGGACAGATCTAGTCACTGGCCCTCCACGTaGCCTGTGACAGAAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: QTEEHQSKKTEPAEDRSSHWPST*PVTEKA Trigger: GGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTG...ACTAGATCTGTCCTCAGCAGGCTCTGTCTTTTTGCTTTGGTGCTCCTCGGTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 90 bp | CCTCTGTCTCCAGCCCTCCCAAATTCTTTATGGCTGCATAGGCGTTaGAGGGCAATCCACCCAAGCAGGCCTTGTCCACCTTGTCACAAT | + |
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Preference number: 5 (lower is better) Translates to: PLSPALPNSLWLHRR*RAIHPSRPCPPCHN Trigger: ATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGGGAGGGCTGGAGACAGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | CTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGAGCACCAAACACACCAGGGGATCATaGCAAGGTGGCTCCTCTAGT | + |
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Preference number: 5 (lower is better) Translates to: LDVERDQKTDSIRPRSTKHTRGS*QGGSSS Trigger: ACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTG...TTTGGTGCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 90 bp | TCTTCCTCCAGTCCCATTCAGGCGGGGCAAGATCATTTATGGACTTaGCTGGACTCATCTTCCTGCCAGACTCCTTCTGTAAGAGGGGAT | + |
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Preference number: 5 (lower is better) Translates to: SSSSPIQAGQDHLWT*LDSSSCQTPSVRGD Trigger: ATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 90 bp | AACTGCATGCCGAAGGCGTTAATGGCAACTGAGATAGGTCCTTTCTaGGCCAGCCAGGCTGCTATCTTATTTTCATTCCGGCTCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: NCMPKALMATEIGPF*ASQAAILFSFRLSS Trigger: GGAGCTGAGCCGGAATGAAAATAAGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | CACCTCAGGATCCTCCTAGCTACCACAATCGGACACAGGTGCAGCTGGGGAACTACTGGGCTTCTTCCCTaGATTCATAAGTCCGGTTAT | + |
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Preference number: 5 (lower is better) Translates to: HLRILLATTIGHRCSWGTTGLLP*IHKSGY Trigger: ATAACCGGACTTATGAATCAAGGGAAGAAGCCCAGT...AGTTCCCCAGCTGCACCTGTGTCCGATTGTGGTAGCTAGGAGGATCCTGAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 90 bp | AATCCCGTGGCGATAGAACTGCATGCCGAAGGCGTTAATGGCAACTaGGATAGGTCCTTTCTGGGCCAGCCAGGCTGCTATCTTATTTTC | + |
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Preference number: 5 (lower is better) Translates to: NPVAIELHAEGVNGN*DRSFLGQPGCYLIF Trigger: GAAAATAAGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAGTTCTATCGCCACGGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 90 bp | AGAGAAGTCCTGGGGCAGGGGATCCTTGTCCAACAATGGAAGGAATaGGCTGAAAGTCGCATTTCTAAACTCTGTGACCTTGGCATTCAC | + |
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Preference number: 5 (lower is better) Translates to: REVLGQGILVQQWKE*AESRISKLCDLGIH Trigger: GTGAATGCCAAGGTCACAGAGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAGGACTTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS-3UTR CAA 90 bp | ACTTTCCTGGATGTGGAAAGGGACCAGAAAACTGACAGCATCAGACCGAGGAGCCTCGTATCATATTTCTaGCAAAGACAGTCAATCGCC | + |
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Preference number: 5 (lower is better) Translates to: TFLDVERDQKTDSIRPRSLVSYF*QRQSIA Trigger: GGCGATTGACTGTCTTTGCAAGAAATATGATACGAG...GCTCCTCGGTCTGATGCTGTCAGTTTTCTGGTCCCTTTCCACATCCAGGAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 90 bp | AGGCTGCTATCTTATTTTCATTCCGGCTCAGCTCCACTGAATCATTaGTGTAGACTTTTGCCATCTGTGCTGAGAAGTTGCAGGTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: RLLSYFHSGSAPLNH*CRLLPSVLRSCRSE Trigger: TTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATAAGATAGCAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CAA 90 bp | GGCCGGCCCGGCGGACGCGTCCGCGCACCGCTCCTAGCACGGCCCTaGTCCCCGCAGCACGGCCGTAATTGTACATGTCCAGCGCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: GRPGGRVRAPLLARP*SPQHGRNCTCPARS Trigger: GCTTCGCGCTGGACATGTACAATTACGGCCGTGCTGCGGGGACAAGGGCCGTGCTAGGAGCGGTGCGCGGACGCGTCCGCCGGGCCGGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119694.3 ENSMUST00000237011.2 ENSMUST00000237504.2 |
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| CDS CCA 72 bp | ATGTCCAGCGCGAAGCGGGCGGGGGCCAGCAGCTCCTaGGACGACAAGTTCCAGGCCTGCTCGTCATCTGCC | + |
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Preference number: 6 (lower is better) Translates to: MSSAKRAGASSS*DDKFQACSSSA Trigger: GGCAGATGACGAGCAGGCCTGGAACTTGTCGTCCCAGGAGCTGCTGGCCCCCGCCCGCTTCGCGCTGGACAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000119694.3 ENSMUST00000237011.2 ENSMUST00000237504.2 |
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| CDS CAA 72 bp | GGCGGACGCGTCCGCGCACCGCTCCTAGCACGGCCCTaGTCCCCGCAGCACGGCCGTAATTGTACATGTCCA | + |
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Preference number: 6 (lower is better) Translates to: GGRVRAPLLARP*SPQHGRNCTCP Trigger: TGGACATGTACAATTACGGCCGTGCTGCGGGGACAAGGGCCGTGCTAGGAGCGGTGCGCGGACGCGTCCGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119694.3 ENSMUST00000237011.2 ENSMUST00000237504.2 |
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| CDS CAA 90 bp | AGGGAGAGCAGAGTCCCCCGGTTCAGGAACCACTGGCCCTCCACGTaGCCTGTGACAGAAAAGGCCCAGCAGGAGCCACACATGCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RESRVPRFRNHWPST*PVTEKAQQEPHMPW Trigger: CCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 72 bp | CCCGGTTCAGGAACCACTGGCCCTCCACGTTGCCTGTaGCAGAAAAGGCCCAGCAGGAGCCACACATGCCCT | + |
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Preference number: 6 (lower is better) Translates to: PGSGTTGPPRCL*QKRPSRSHTCP Trigger: AGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | ACACCAGGGGATCATTGCAAGGTGGCTCCTCTAGTGTaGCTTCCAGGGAGAACAGAGAGCCCTGGCCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: TPGDHCKVAPLV*LPGRTESPGRP Trigger: GGGCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119694.3 ENSMUST00000237011.2 ENSMUST00000237504.2 |
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| CDS CCA 72 bp | GACAGGGAGAGCAGAGTCCCCCGGTTCAGGAACCACTaGCCCTCCACGTTGCCTGTGACAGAAAAGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: DRESRVPRFRNH*PSTLPVTEKAQ Trigger: CTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS GCA 72 bp | CAGGCCTTGTCCACCTTGTCACAATCCAAGAGCTCCTaGTCTGACAGGGAGAGCAGAGTCCCCCGGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: QALSTLSQSKSS*SDRESRVPRFR Trigger: CCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGGAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | CCAGCCCTCCCAAATTCTTTATGGCTGCATAGGCGTTaGAGGGCAATCCACCCAAGCAGGCCTTGTCCACCT | + |
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Preference number: 6 (lower is better) Translates to: PALPNSLWLHRR*RAIHPSRPCPP Trigger: AGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGGGAGGGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CAA 72 bp | TTGGAGGGCAATCCACCCAAGCAGGCCTTGTCCACCTaGTCACAATCCAAGAGCTCCTGCTCTGACAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LEGNPPKQALST*SQSKSSCSDRE Trigger: CTCCCTGTCAGAGCAGGAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS GCA 72 bp | ATCCTCTGTCTCCAGCCCTCCCAAATTCTTTATGGCTaGATAGGCGTTGGAGGGCAATCCACCCAAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: ILCLQPSQILYG*IGVGGQSTQAG Trigger: GCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGGGAGGGCTGGAGACAGAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | GTGACAGAAAAGGCCCAGCAGGAGCCACACATGCCCTaGTTCTTCACTTCAGTGACAGCCCCTTTCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: VTEKAQQEPHMP*FFTSVTAPFFL Trigger: GAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | CACAGAGAAGTCCACTGTTTTCTTCGTCTCAGGCAGTaGGCACACCAGGGGATCATTGCAAGGTGGCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: HREVHCFLRLRQ*AHQGIIARWLL Trigger: GAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTGGACTTCTCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237504.2 |
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| CDS TCA 72 bp | GCGATAGAACTGCATGCCGAAGGCGTTAATGGCAACTaGGATAGGTCCTTTCTGGGCCAGCCAGGCTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: AIELHAEGVNGN*DRSFLGQPGCY Trigger: ATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAGTTCTATCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | TCCTCCAGTCCCATTCAGGCGGGGCAAGATCATTTATaGACTTGGCTGGACTCATCTTCCTGCCAGACTCCT | + |
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Preference number: 6 (lower is better) Translates to: SSSPIQAGQDHL*TWLDSSSCQTP Trigger: AGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CAA 72 bp | CAGTCCCATTCAGGCGGGGCAAGATCATTTATGGACTaGGCTGGACTCATCTTCCTGCCAGACTCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: QSHSGGARSFMD*AGLIFLPDSFC Trigger: ACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CAA 90 bp | TTCTTCCTCCAGTCCCATTCAGGCGGGGCAAGATCATTTATGGACTaGGCTGGACTCATCTTCCTGCCAGACTCCTTCTGTAAGAGGGGA | + |
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Preference number: 6 (lower is better) Translates to: FFLQSHSGGARSFMD*AGLIFLPDSFCKRG Trigger: TCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | AGTCCCATTCAGGCGGGGCAAGATCATTTATGGACTTaGCTGGACTCATCTTCCTGCCAGACTCCTTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: SPIQAGQDHLWT*LDSSSCQTPSV Trigger: TACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | CCGAAGGCGTTAATGGCAACTGAGATAGGTCCTTTCTaGGCCAGCCAGGCTGCTATCTTATTTTCATTCCGG | + |
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Preference number: 6 (lower is better) Translates to: PKALMATEIGPF*ASQAAILFSFR Trigger: CCGGAATGAAAATAAGATAGCAGCCTGGCTGGCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS CCA 72 bp | AGTCGCATTTCTAAACTCTGTGACCTTGGCATTCACTaGGCTACAGTCCCTCCTCAGCAGCAAGTGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SRISKLCDLGIH*ATVPPQQQVFF Trigger: AAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAGAGTTTAGAAATGCGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 72 bp | TGCAAAGACAGTCAATCGCCACTGGGCTTCTTCCCTTaGTTCATAAGTCCGGTTATAGGTGGTCATGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: CKDSQSPLGFFP*FISPVIGGHEV Trigger: GACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAGAAGCCCAGTGGCGATTGACTGTCTTTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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| CDS TCA 72 bp | TCTTATTTTCATTCCGGCTCAGCTCCACTGAATCATTaGTGTAGACTTTTGCCATCTGTGCTGAGAAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: SYFHSGSAPLNH*CRLLPSVLRSC Trigger: GCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119694.3 |
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