Pregenerated sensors for CTS8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057446Ensembl transcript IDs: ENSMUST00000021891.5
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCTTTGTCTCTAAGTCATTCTGCCCTATCTTCCACAATATTCCCTaGGCCTTACATGCAGGAGTTATGAATACTAAAAGGAGAATGAGC | + |
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Preference number: 1 (lower is better) Translates to: SFVSKSFCPIFHNIP*ALHAGVMNTKRRMS Trigger: GCTCATTCTCCTTTTAGTATTCATAACTCCTGCATGTAAGGCTCAGGGAATATTGTGGAAGATAGGGCAGAATGACTTAGAGACAAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGCCACCCTTCTTTCTCTAAGAACATCAACAGAACACAAATGTATGTCTTTATTCAATCCCAGCACTTaGGAGGCAGAGGTAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: RATLLSLRTSTEHKCMSLFNPST*EAEVGG Trigger: TCCACCTACCTCTGCCTCCCAAGTGCTGGGATTGAA...TAAAGACATACATTTGTGTTCTGTTGATGTTCTTAGAGAAAGAAGGGTGGCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR CAA 90 bp | GAACCCCTGATCAACTACCTAAACAATGTGATTAGTCCTAAAGTCTaGAACATAGAAGGAACAAAAATTGATTCAGCCTTCAGCTGGTTT | + |
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Preference number: 2 (lower is better) Translates to: EPLINYLNNVISPKV*NIEGTKIDSAFSWF Trigger: AAACCAGCTGAAGGCTGAATCAATTTTTGTTCCTTCTATGTTCAAGACTTTAGGACTAATCACATTGTTTAGGTAGTTGATCAGGGGTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR-3UTR CCA 90 bp | TCTCCTTGTATATTTCATGATCCTTTGTCTCTAAGTCATTCTGCCCTATCTTCCGATTCAGCCTTCAGCTaGTTTCATTATATATTCACA | + |
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Preference number: 2 (lower is better) Translates to: SPCIFHDPLSLSHSALSSDSAFS*FHYIFT Trigger: TGTGAATATATAATGAAACCAGCTGAAGGCTGAATC...GGAAGATAGGGCAGAATGACTTAGAGACAAAGGATCATGAAATATACAAGGAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR GCA 72 bp | TCCATGCAGCAGAGGCTGGTCATGGTAAACAGAAAGTaGCTCCACTTCACAGGCTGTCTCCATTCCAACCCT | + |
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Preference number: 3 (lower is better) Translates to: SMQQRLVMVNRK*LHFTGCLHSNP Trigger: AGGGTTGGAATGGAGACAGCCTGTGAAGTGGAGGCACTTTCTGTTTACCATGACCAGCCTCTGCTGCATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR-3UTR CAA 90 bp | GTTATTAATGTGACAACAAAATTAATATCCTGTAGCTCATTACCTGGCAGTGGGCTTCAATCCCAGCACTaGGGAGGCAGAGGTAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: VINVTTKLISCSSLPGSGLQSQH*GGRGRW Trigger: CCACCTACCTCTGCCTCCCAAGTGCTGGGATTGAAG...CCCACTGCCAGGTAATGAGCTACAGGATATTAATTTTGTTGTCACATTAATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR TCA 72 bp | CAGAATTCACATTACATCACGTTCTGCAGTAACTCATaGACTCTATCCATGCAGCAGAGGCTGGTCATGGTA | + |
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Preference number: 3 (lower is better) Translates to: QNSHYITFCSNS*TLSMQQRLVMV Trigger: TACCATGACCAGCCTCTGCTGCATGGATAGAGTTCATGAGTTACTGCAGAACGTGATGTAATGTGAATTCTG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR TCA 72 bp | TCTAAGTCATTCTGCCCTATCTTCCACAATATTCCCTaGGCCTTACATGCAGGAGTTATGAATACTAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: SKSFCPIFHNIP*ALHAGVMNTKR Trigger: CCTTTTAGTATTCATAACTCCTGCATGTAAGGCTCAGGGAATATTGTGGAAGATAGGGCAGAATGACTTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR TCA 90 bp | GCAGCAGAGGCTGGTCATGGTAAACAGAAAGTGCCTCCACTTCACAGGCTGTCTATATTTGTTGCCATCTaGCTCCTTTCCTTCATAACC | + |
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Preference number: 4 (lower is better) Translates to: AAEAGHGKQKVPPLHRLSIFVAI*LLSFIT Trigger: GGTTATGAAGGAAAGGAGTCAGATGGCAACAAATAT...AGACAGCCTGTGAAGTGGAGGCACTTTCTGTTTACCATGACCAGCCTCTGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR TCA 90 bp | AAACAGAAAGTGCCTCCACTTCACAGGCTGTCTCCATTCCAACCCTTCCTTCTTCAAACTGGGATCAGATaGTTGAGTAACTTCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: KQKVPPLHRLSPFQPFLLQTGIR*LSNFSH Trigger: GTGGCTGAAGTTACTCAATCATCTGATCCCAGTTTG...AAGAAGGAAGGGTTGGAATGGAGACAGCCTGTGAAGTGGAGGCACTTTCTGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR TCA 90 bp | GGAGGCAGAGGTAGGTGGATTTCTGAATTTGAGGCCAGCCTGGTCTACAGAGTGGTCTTTCTCACTGTTTaGAACAAACGAAAAGCTAGT | + |
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Preference number: 4 (lower is better) Translates to: GGRGRWISEFEASLVYRVVFLTV*NKRKAS Trigger: ACTAGCTTTTCGTTTGTTTCAAACAGTGAGAAAGAC...CACTCTGTAGACCAGGCTGGCCTCAAATTCAGAAATCCACCTACCTCTGCCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | GCAGCAGAGGCTGGTCATGGTAAACAGAAAGTGCCTCCACTTCACAGGCTGTCTCCTAAAATTTGGGACTaGAATATCAGTCAGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: AAEAGHGKQKVPPLHRLSPKIWD*NISQHF Trigger: AAAATGCTGACTGATATTCCAGTCCCAAATTTTAGG...AGACAGCCTGTGAAGTGGAGGCACTTTCTGTTTACCATGACCAGCCTCTGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | GGAGGCAGAGGTAGGTGGATTTCTGAATTTGAGGCCAGCCTGGTCTACAGAGTGATTACTGCTGCACTTTaGCTCATAATAAATACCTTC | + |
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Preference number: 4 (lower is better) Translates to: GGRGRWISEFEASLVYRVITAAL*LIINTF Trigger: GAAGGTATTTATTATGAGCCAAAGTGCAGCAGTAAT...CACTCTGTAGACCAGGCTGGCCTCAAATTCAGAAATCCACCTACCTCTGCCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | AGAGCCACCCTTCTTTCTCTAAGAACATCAACAGAACACAAATGTATGTCTTTACTCCCAAGCATAGGATaGCCAGCAAGACAGCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: RATLLSLRTSTEHKCMSLLPSIG*PARQQD Trigger: GTCCTGCTGTCTTGCTGGCCATCCTATGCTTGGGAG...TAAAGACATACATTTGTGTTCTGTTGATGTTCTTAGAGAAAGAAGGGTGGCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | AAACAGAAAGTGCCTCCACTTCACAGGCTGTCTCCATTCCAACCCTTCCTTCTTCCAGCAATAGGTTGGTaGATACTTTTCTTCTTCCTA | + |
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Preference number: 4 (lower is better) Translates to: KQKVPPLHRLSPFQPFLLPAIGW*ILFFFL Trigger: TAGGAAGAAGAAAAGTATCCACCAACCTATTGCTGG...AAGAAGGAAGGGTTGGAATGGAGACAGCCTGTGAAGTGGAGGCACTTTCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | TCTCCTTGTATATTTCATGATCCTTTGTCTCTAAGTCATTCTGCCCTATCTTCCGAAGCAATTCCACAGTaGTTGTTCCTGCCTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: SPCIFHDPLSLSHSALSSEAIPQ*LFLPLA Trigger: TGCCAGAGGCAGGAACAACCACTGTGGAATTGCTTC...GGAAGATAGGGCAGAATGACTTAGAGACAAAGGATCATGAAATATACAAGGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR TCA 90 bp | TCTCCTTGTATATTTCATGATCCTTTGTCTCTAAGTCATTCTGCCCTATCTTCCCCCCATTGCTCACCATaGCTGTTCTTTATCAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: SPCIFHDPLSLSHSALSSPHCSP*LFFISQ Trigger: TTGGCTGATAAAGAACAGTCATGGTGAGCAATGGGG...GGAAGATAGGGCAGAATGACTTAGAGACAAAGGATCATGAAATATACAAGGAGA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR GCA 90 bp | GTTATTAATGTGACAACAAAATTAATATCCTGTAGCTCATTACCTGGCAGTGGGTCAGCCAATATTTGTTaGCATCTGACTCCTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VINVTTKLISCSSLPGSGSANIC*HLTPFL Trigger: AAGGAAAGGAGTCAGATGGCAACAAATATTGGCTGA...CCCACTGCCAGGTAATGAGCTACAGGATATTAATTTTGTTGTCACATTAATAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| 3UTR CAA 72 bp | TTGGACATACAGTCTCCTTGTATATTTCATGATCCTTaGTCTCTAAGTCATTCTGCCCTATCTTCCACAATA | + |
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Preference number: 4 (lower is better) Translates to: LDIQSPCIFHDP*SLSHSALSSTI Trigger: TATTGTGGAAGATAGGGCAGAATGACTTAGAGACAAAGGATCATGAAATATACAAGGAGACTGTATGTCCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | GTTATTAATGTGACAACAAAATTAATATCCTGTAGCTCATTACCTGGCAGTGGGCTTCTTCCTAAAATTTaGGACTGGAATATCAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: VINVTTKLISCSSLPGSGLLPKI*DWNISQ Trigger: CTGACTGATATTCCAGTCCCAAATTTTAGGAAGAAG...CCCACTGCCAGGTAATGAGCTACAGGATATTAATTTTGTTGTCACATTAATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CCA 90 bp | TCTCCTTGTATATTTCATGATCCTTTGTCTCTAAGTCATTCTGCCCTATCTTCCACTACCAGAACAGAATaGTTGATAATATTACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SPCIFHDPLSLSHSALSSTTRTE*LIILLL Trigger: CAGCAGTAATATTATCAACCATTCTGTTCTGGTAGT...GGAAGATAGGGCAGAATGACTTAGAGACAAAGGATCATGAAATATACAAGGAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CAA 90 bp | GGAGGCAGAGGTAGGTGGATTTCTGAATTTGAGGCCAGCCTGGTCTACAGAGTGTTTATCAGCCAATATTaGTTGCCATCTGACTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: GGRGRWISEFEASLVYRVFISQY*LPSDSF Trigger: AAAGGAGTCAGATGGCAACAAATATTGGCTGATAAA...CACTCTGTAGACCAGGCTGGCCTCAAATTCAGAAATCCACCTACCTCTGCCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CAA 90 bp | GTCATGGTAAACAGAAAGTGCCTCCACTTCACAGGCTGTCTCCATTCCAACCCTACCAGAACAGAATGGTaGATAATATTACTGCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: VMVNRKCLHFTGCLHSNPTRTEW*IILLLH Trigger: GTGCAGCAGTAATATTATCAACCATTCTGTTCTGGT...AGGGTTGGAATGGAGACAGCCTGTGAAGTGGAGGCACTTTCTGTTTACCATGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CAA 90 bp | AAACAGAAAGTGCCTCCACTTCACAGGCTGTCTCCATTCCAACCCTTCCTTCTTATCAGCCAATATTTGTaGCCATCTGACTCCTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: KQKVPPLHRLSPFQPFLLISQYL*PSDSFP Trigger: AGGAAAGGAGTCAGATGGCAACAAATATTGGCTGAT...AAGAAGGAAGGGTTGGAATGGAGACAGCCTGTGAAGTGGAGGCACTTTCTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS-3UTR CAA 90 bp | TCTCCTTGTATATTTCATGATCCTTTGTCTCTAAGTCATTCTGCCCTATCTTCCATGTCACCAAAGGCATaGACATCCATGGTGAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: SPCIFHDPLSLSHSALSSMSPKA*TSMVKF Trigger: AAACTTCACCATGGATGTCAATGCCTTTGGTGACAT...GGAAGATAGGGCAGAATGACTTAGAGACAAAGGATCATGAAATATACAAGGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS GCA 90 bp | TTCAATATTATGCTGTTTGACCAGTTTCATGTTTTCTTCCCACACTaGTCTCTTCTGTCCTTCTTCCTCCATGCTGTAGTTTTTGTTAAA | + |
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Preference number: 5 (lower is better) Translates to: FNIMLFDQFHVFFPH*SLLSFFLHAVVFVK Trigger: TTTAACAAAAACTACAGCATGGAGGAAGAAGGACAGAAGAGAGCAGTGTGGGAAGAAAACATGAAACTGGTCAAACAGCATAATATTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS GCA 72 bp | TGTTCCTGCCTCTGGCAAGCTTCATGTAGCCATTCATaGCCCATTGCTCACCATGACTGTTCTTTATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: CSCLWQASCSHS*PIAHHDCSLSA Trigger: GGCTGATAAAGAACAGTCATGGTGAGCAATGGGGCATGAATGGCTACATGAAGCTTGCCAGAGGCAGGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS CAA 90 bp | GTTGTTCCTGCCTCTGGCAAGCTTCATGTAGCCATTCATGCCCCATaGCTCACCATGACTGTTCTTTATCAGCCAATATTTGTTGCCATC | + |
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Preference number: 6 (lower is better) Translates to: VVPASGKLHVAIHAP*LTMTVLYQPIFVAI Trigger: GATGGCAACAAATATTGGCTGATAAAGAACAGTCATGGTGAGCAATGGGGCATGAATGGCTACATGAAGCTTGCCAGAGGCAGGAACAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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| CDS CCA 72 bp | CAGAACAGAATGGTTGATAATATTACTGCTGCACTTTaGCTCATAATAAATACCTTCCCTATACAACCTGAA | + |
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Preference number: 6 (lower is better) Translates to: QNRMVDNITAAL*LIINTFPIQPE Trigger: TTCAGGTTGTATAGGGAAGGTATTTATTATGAGCCAAAGTGCAGCAGTAATATTATCAACCATTCTGTTCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021891.5 |
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