Pregenerated sensors for CTS3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074870Ensembl transcript IDs: ENSMUST00000054702.9, ENSMUST00000223815.2, ENSMUST00000224855.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTTTTCCATCAAATACTTAAAAGAATCTAACACACTGCCTGCATaGCAGCCACTTCCGTCAACACAGTCCACTAGGTTCTGTACACTC | + |
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Preference number: 1 (lower is better) Translates to: PFSIKYLKESNTLPA*QPLPSTQSTRFCTL Trigger: GAGTGTACAGAACCTAGTGGACTGTGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTTAGATTCTTTTAAGTATTTGATGGAAAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| 3UTR CCA 90 bp | TATAGAACAGGAAAGATTCATGCCATGCATCGATTACAACAGAAATaGGCCCAAGACTTGCCACAGCACTCATTAGGTCAACCTCATTGT | + |
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Preference number: 1 (lower is better) Translates to: YRTGKIHAMHRLQQK*AQDLPQHSLGQPHC Trigger: ACAATGAGGTTGACCTAATGAGTGCTGTGGCAAGTCTTGGGCCCATTTCTGTTGTAATCGATGCATGGCATGAATCTTTCCTGTTCTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| 3UTR CAA 90 bp | GAAATGGGCCCAAGACTTGCCACAGCACTCATTAGGTCAACCTCATaGTTTGGGATAAACTCAAAGCCTGTGATACTAGCAGTAGAATTC | + |
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Preference number: 2 (lower is better) Translates to: EMGPRLATALIRSTS*FGINSKPVILAVEF Trigger: GAATTCTACTGCTAGTATCACAGGCTTTGAGTTTATCCCAAACAATGAGGTTGACCTAATGAGTGCTGTGGCAAGTCTTGGGCCCATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGACATCACAACTGGATTTTCAGTGACTGCAGTGTCTCATATTCACTGCAGTGTTTTGAAATGGAAGTaGCTCTTCTCTACATGGTGT | + |
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Preference number: 2 (lower is better) Translates to: LDITTGFSVTAVSHIHCSVLKWK*LFSTWC Trigger: ACACCATGTAGAGAAGAGGCACTTCCATTTCAAAAC...ACTGCAGTGAATATGAGACACTGCAGTCACTGAAAATCCAGTTGTGATGTCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| 3UTR TCA 72 bp | TGTGTCACAAACTTGACATCACAACTGGATTTTCAGTaGCTGCAGTGTCTCATATTCACTGCAGTGACCCGC | + |
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Preference number: 3 (lower is better) Translates to: CVTNLTSQLDFQ*LQCLIFTAVTR Trigger: GCGGGTCACTGCAGTGAATATGAGACACTGCAGTCACTGAAAATCCAGTTGTGATGTCAAGTTTGTGACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| 3UTR TCA 72 bp | ATTTTCAGTGACTGCAGTGTCTCATATTCACTGCAGTaGCCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: IFSDCSVSYSLQ*PAVLKWKCLFS Trigger: AGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAGTCACTGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| 3UTR TCA 72 bp | ATCAAATACTTAAAAGAATCTAACACACTGCCTGCATaGCAGCCACTTCCGTCAACACAGTCCACTAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: IKYLKESNTLPA*QPLPSTQSTRF Trigger: GAACCTAGTGGACTGTGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTTAGATTCTTTTAAGTATTTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| 3UTR TCA 72 bp | TGGTCATGTCTTTTGAGAATAAATGTGTCACAAACTTaGCATCACAACTGGATTTTCAGTGACTGCAGTGTC | + |
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Preference number: 3 (lower is better) Translates to: WSCLLRINVSQT*HHNWIFSDCSV Trigger: GACACTGCAGTCACTGAAAATCCAGTTGTGATGTCAAGTTTGTGACACATTTATTCTCAAAAGACATGACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | GGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACGGGGAAAACGGGAAGTaGAGCAATTCCACAGTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: GSASSLHGVFCPFLPCQHGENGK*SNSTVV Trigger: AACCACTGTGGAATTGCTTCACTTCCCGTTTTCCCC...GTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | CTGCAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTTCCATGGTGAAACCATaGTTCCCCAGGCCATTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LQCLIFTAVTRCFEMEVPSMVKP*FPRPFS Trigger: GGAGAATGGCCTGGGGAAGCATGGTTTCACCATGGA...AGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | ACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTCATTCATTTCCATGGTaGAACCATGCTTCCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: TAVTRCFEMEVPLLYMVSHSFPW*NHASPG Trigger: GCCTGGGGAAGCATGGTTTCACCATGGAAATGAATG...AGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | CTGCAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCATTCATTTCCATGGTaGAACCATGCTTCCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LQCLIFTAVTRCFEMEVPHSFPW*NHASPG Trigger: GCCTGGGGAAGCATGGTTTCACCATGGAAATGAATG...AGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | AAGAATCTAACACACTGCCTGCATGACAGCCACTTCCGTCAACACAGTCCACTACATTCATTTCCATGGTaGAACCATGCTTCCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: KNLTHCLHDSHFRQHSPLHSFPW*NHASPG Trigger: GCCTGGGGAAGCATGGTTTCACCATGGAAATGAATG...TAGTGGACTGTGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTTAGATTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR TCA 90 bp | GAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAACACACTGCCTGCATaGCAGCCACTTCCGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: EMEVPLLYMVSSVHSFLVNTLPA*QPLPST Trigger: TGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTT...GACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | CAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTAACACACTGCCTGCATaGCAGCCACTTCCGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: QCLIFTAVTRCFEMEVPLNTLPA*QPLPST Trigger: TGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTT...AAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | GAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCTCCATGGTGAAACCATaGTTCCCCAGGCCATTCTCC | + |
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Preference number: 4 (lower is better) Translates to: EMEVPLLYMVSSVHSFLVSMVKP*FPRPFS Trigger: GGAGAATGGCCTGGGGAAGCATGGTTTCACCATGGA...GACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | CTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACGGGGAAAACGGGAAGTaGAGCAATTCCACAGTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: LIFTAVTRCFEMEVPLLYGENGK*SNSTVV Trigger: AACCACTGTGGAATTGCTTCACTTCCCGTTTTCCCC...GTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | GATTGTACCTGCATGATCCTTGCTTGTCTTCATATGGATAGGTTGCCTCAGACTTCCATGGTGAAACCATaGTTCCCCAGGCCATTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: DCTCMILACLHMDRLPQTSMVKP*FPRPFS Trigger: GGAGAATGGCCTGGGGAAGCATGGTTTCACCATGGA...AGTCTGAGGCAACCTATCCATATGAAGACAAGCAAGGATCATGCAGGTACAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR GCA 90 bp | GGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACCCAACAAGAATTACATaGAATCTGTGTCCGCACAGG | + |
|
Preference number: 4 (lower is better) Translates to: GSASSLHGVFCPFLPCQHPTRIT*NLCPHR Trigger: CCTGTGCGGACACAGATTGCATGTAATTCTTGTTGG...GTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | GGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACCCCTTTCTTGACAGTTaGGACTGGGATTTCAATCAT | + |
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Preference number: 4 (lower is better) Translates to: GSASSLHGVFCPFLPCQHPFLDS*DWDFNH Trigger: ATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGG...GTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| 3UTR CAA 72 bp | GCCATGCATCGATTACAACAGAAATGGGCCCAAGACTaGCCACAGCACTCATTAGGTCAACCTCATTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: AMHRLQQKWAQD*PQHSLGQPHCL Trigger: CAAACAATGAGGTTGACCTAATGAGTGCTGTGGCAAGTCTTGGGCCCATTTCTGTTGTAATCGATGCATGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR TCA 90 bp | GAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCCACTTTTCCCTTTCTTaGCAGTTGGGACTGGGATTT | + |
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Preference number: 4 (lower is better) Translates to: EMEVPLLYMVSSVHSFLVHFSLS*QLGLGF Trigger: AAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTG...GACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | CAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCACTTTTCCCTTTCTTaGCAGTTGGGACTGGGATTT | + |
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Preference number: 4 (lower is better) Translates to: QCLIFTAVTRCFEMEVPLHFSLS*QLGLGF Trigger: AAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTG...AAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR TCA 90 bp | GGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACGTAGCACAGCATGTCTaGGAGCAAATAAACTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: GSASSLHGVFCPFLPCQHVAQHV*EQINCY Trigger: ATAACAGTTTATTTGCTCTCAGACATGCTGTGCTAC...GTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | CTGCAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTATTCAGCATCCAAAATaGGATCAGGTGATGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: LQCLIFTAVTRCFEMEVPIQHPK*DQVMVM Trigger: CATCACCATCACCTGATCCCATTTTGGATGCTGAAT...AGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | CTGCAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCCCTTTCTTGACAGTTaGGACTGGGATTTCAATCAT | + |
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Preference number: 4 (lower is better) Translates to: LQCLIFTAVTRCFEMEVPPFLDS*DWDFNH Trigger: ATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGG...AGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | AAGAATCTAACACACTGCCTGCATGACAGCCACTTCCGTCAACACAGTCCACTAACAGACAGACGTTTCTaGACACTTTTCCCTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: KNLTHCLHDSHFRQHSPLTDRRF*TLFPFL Trigger: CAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGT...TAGTGGACTGTGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTTAGATTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR TCA 90 bp | CTGCAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTGTAGCACAGCATGTCTaGGAGCAAATAAACTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: LQCLIFTAVTRCFEMEVPVAQHV*EQINCY Trigger: ATAACAGTTTATTTGCTCTCAGACATGCTGTGCTAC...AGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | CAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTATTCAGCATCCAAAATaGGATCAGGTGATGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: QCLIFTAVTRCFEMEVPLIQHPK*DQVMVM Trigger: CATCACCATCACCTGATCCCATTTTGGATGCTGAAT...AAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | CTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACACAGACAGACGTTTCTaGACACTTTTCCCTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: LIFTAVTRCFEMEVPLLYTDRRF*TLFPFL Trigger: CAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGT...GTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | GAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCACAGACAGACGTTTCTaGACACTTTTCCCTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: EMEVPLLYMVSSVHSFLVTDRRF*TLFPFL Trigger: CAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGT...GACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | CTGCAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTGTCAACCTCATTGTTTaGGATAAACTCAAAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LQCLIFTAVTRCFEMEVPVNLIV*DKLKAC Trigger: ACAGGCTTTGAGTTTATCCCAAACAATGAGGTTGAC...AGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| 3UTR CAA 72 bp | CCAAGACTTGCCACAGCACTCATTAGGTCAACCTCATaGTTTGGGATAAACTCAAAGCCTGTGATACTAGCA | + |
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Preference number: 4 (lower is better) Translates to: PRLATALIRSTS*FGINSKPVILA Trigger: TGCTAGTATCACAGGCTTTGAGTTTATCCCAAACAATGAGGTTGACCTAATGAGTGCTGTGGCAAGTCTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR GCA 90 bp | ACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTAACAGGAAAGATTCATaGCATGCATCGATTACAACA | + |
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Preference number: 4 (lower is better) Translates to: TAVTRCFEMEVPLLYMVSNRKDS*HASITT Trigger: TGTTGTAATCGATGCATGGCATGAATCTTTCCTGTT...AGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | CTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACGTCAACCTCATTGTTTaGGATAAACTCAAAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LIFTAVTRCFEMEVPLLYVNLIV*DKLKAC Trigger: ACAGGCTTTGAGTTTATCCCAAACAATGAGGTTGAC...GTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | CAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCCATTCTCCCCATTGTaGAGTTTGATCTTTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: QCLIFTAVTRCFEMEVPLPFSPL*SLIFFI Trigger: TATGAAAAAGATCAAACTGCACAATGGGGAGAATGG...AAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | CTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACCCATTCTCCCCATTGTaGAGTTTGATCTTTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: LIFTAVTRCFEMEVPLLYPFSPL*SLIFFI Trigger: TATGAAAAAGATCAAACTGCACAATGGGGAGAATGG...GTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | CAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTAACAGGAAAGATTCATaGCATGCATCGATTACAACA | + |
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Preference number: 4 (lower is better) Translates to: QCLIFTAVTRCFEMEVPLNRKDS*HASITT Trigger: TGTTGTAATCGATGCATGGCATGAATCTTTCCTGTT...AAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | CAGTGTCTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTTTTATTTTCCACTTCTaGCATTCAGCATCCAAAATG | + |
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Preference number: 4 (lower is better) Translates to: QCLIFTAVTRCFEMEVPLFIFHF*HSASKM Trigger: CATTTTGGATGCTGAATGGCAGAAGTGGAAAATAAA...AAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAGACACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CCA 90 bp | TTTGGGATAAACTCAAAGCCTGTGATACTAGCAGTAGAATTCTCTGGATTGTACATTCAGCATCCAAAATaGGATCAGGTGATGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: FGINSKPVILAVEFSGLYIQHPK*DQVMVM Trigger: CATCACCATCACCTGATCCCATTTTGGATGCTGAAT...GTACAATCCAGAGAATTCTACTGCTAGTATCACAGGCTTTGAGTTTATCCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR GCA 90 bp | CTTGACATCACAACTGGATTTTCAGTGACTGCAGTGTCTCATATTCACTGCAGTTTTATTTTCCACTTCTaGCATTCAGCATCCAAAATG | + |
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Preference number: 4 (lower is better) Translates to: LDITTGFSVTAVSHIHCSFIFHF*HSASKM Trigger: CATTTTGGATGCTGAATGGCAGAAGTGGAAAATAAA...ACTGCAGTGAATATGAGACACTGCAGTCACTGAAAATCCAGTTGTGATGTCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR GCA 90 bp | AACAGGAAAGATTCATGCCATGCATCGATTACAACAGAAATGGGCCCAAGACTTTTTATTTTCCACTTCTaGCATTCAGCATCCAAAATG | + |
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Preference number: 4 (lower is better) Translates to: NRKDSCHASITTEMGPRLFIFHF*HSASKM Trigger: CATTTTGGATGCTGAATGGCAGAAGTGGAAAATAAA...AAGTCTTGGGCCCATTTCTGTTGTAATCGATGCATGGCATGAATCTTTCCTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS-3UTR CAA 90 bp | GGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACGTACCCAGGCTGTTCTaGATGATCCAGTATTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: GSASSLHGVFCPFLPCQHVPRLF*MIQYFL Trigger: CAGGAAATACTGGATCATCAAGAACAGCCTGGGTAC...GTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CAA 90 bp | GGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCAGCACGTAGAATTCTCTGGATaGTACCTGCATGATCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: GSASSLHGVFCPFLPCQHVEFSG*YLHDPC Trigger: GCAAGGATCATGCAGGTACAATCCAGAGAATTCTAC...GTGCTGACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CAA 90 bp | ACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACATGGTGTCTAGGCCATTCTCCCCATaGTGCAGTTTGATCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TAVTRCFEMEVPLLYMVSRPFSP*CSLIFF Trigger: GAAAAAGATCAAACTGCACAATGGGGAGAATGGCCT...AGACACCATGTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CAA 90 bp | CTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACGTACCCAGGCTGTTCTaGATGATCCAGTATTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: LIFTAVTRCFEMEVPLLYVPRLF*MIQYFL Trigger: CAGGAAATACTGGATCATCAAGAACAGCCTGGGTAC...GTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CAA 90 bp | CTCATATTCACTGCAGTGACCCGCTGTTTTGAAATGGAAGTGCCTCTTCTCTACAGGCCATTCTCCCCATaGTGCAGTTTGATCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: LIFTAVTRCFEMEVPLLYRPFSP*CSLIFF Trigger: GAAAAAGATCAAACTGCACAATGGGGAGAATGGCCT...GTAGAGAAGAGGCACTTCCATTTCAAAACAGCGGGTCACTGCAGTGAATATGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CAA 90 bp | GAAATGGAAGTGCCTCTTCTCTACATGGTGTCTTCTGTCCATTCCTTCCTTGTCGTAGAATTCTCTGGATaGTACCTGCATGATCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: EMEVPLLYMVSSVHSFLVVEFSG*YLHDPC Trigger: GCAAGGATCATGCAGGTACAATCCAGAGAATTCTAC...GACAAGGAAGGAATGGACAGAAGACACCATGTAGAGAAGAGGCACTTCCATTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS GCA 90 bp | TCCTTCTATGGCACCAGTAACAGAAATAGCCCAACAAGAATTACATaGAATCTGTGTCCGCACAGGAGTAACATAGCCTCTCTTTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: SFYGTSNRNSPTRIT*NLCPHRSNIASLFP Trigger: TGGAAAAAGAGAGGCTATGTTACTCCTGTGCGGACACAGATTGCATGTAATTCTTGTTGGGCTATTTCTGTTACTGGTGCCATAGAAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 |
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| CDS-3UTR CAA 90 bp | AACAGGAAAGATTCATGCCATGCATCGATTACAACAGAAATGGGCCCAAGACTTAGGCCATTCTCCCCATaGTGCAGTTTGATCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: NRKDSCHASITTEMGPRLRPFSP*CSLIFF Trigger: GAAAAAGATCAAACTGCACAATGGGGAGAATGGCCT...AAGTCTTGGGCCCATTTCTGTTGTAATCGATGCATGGCATGAATCTTTCCTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000224855.2 |
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| CDS CCA 90 bp | AGACAGACGTTTCTGGACACTTTTCCCTTTCTTGACAGTTGGGACTaGGATTTCAATCATCTCTTTCCTGAATTCTTCAAGTGTCATGTC | + |
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Preference number: 5 (lower is better) Translates to: RQTFLDTFPFLDSWD*DFNHLFPEFFKCHV Trigger: GACATGACACTTGAAGAATTCAGGAAAGAGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 ENSMUST00000224855.2 |
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| CDS CCA 72 bp | TTTATAAACTTGGGCAGGTTAACAGACAGACGTTTCTaGACACTTTTCCCTTTCTTGACAGTTGGGACTGGG | + |
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Preference number: 6 (lower is better) Translates to: FINLGRLTDRRF*TLFPFLTVGTG Trigger: CCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAACCTGCCCAAGTTTATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 ENSMUST00000224855.2 |
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| CDS CAA 90 bp | TTGGGCAGGTTAACAGACAGACGTTTCTGGACACTTTTCCCTTTCTaGACAGTTGGGACTGGGATTTCAATCATCTCTTTCCTGAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LGRLTDRRFWTLFPF*TVGTGISIISFLNS Trigger: AGAATTCAGGAAAGAGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAACCTGCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 ENSMUST00000224855.2 |
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| CDS CAA 72 bp | TTAACAGACAGACGTTTCTGGACACTTTTCCCTTTCTaGACAGTTGGGACTGGGATTTCAATCATCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LTDRRFWTLFPF*TVGTGISIISF Trigger: GAAAGAGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 ENSMUST00000224855.2 |
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| CDS CCA 72 bp | TTTCTGGACACTTTTCCCTTTCTTGACAGTTGGGACTaGGATTTCAATCATCTCTTTCCTGAATTCTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: FLDTFPFLDSWD*DFNHLFPEFFK Trigger: CTTGAAGAATTCAGGAAAGAGATGATTGAAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054702.9 ENSMUST00000223815.2 ENSMUST00000224855.2 |
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