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Pregenerated sensors for CTRL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031896

Ensembl transcript IDs: ENSMUST00000034368.8

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GAGCCCCGAAGGCAGTGCCTCGTTTGTGGAAGCCAGGCAGACTGGTaGGACTTGTGCTGTGTACCGGGCTGGCGAGGCAAGCTTCAGGAG +
Preference number: 5 (lower is better)
Translates to: EPRRQCLVCGSQADW*DLCCVPGWRGKLQE
Trigger: CTCCTGAAGCTTGCCTCGCCAGCCCGGTACACAGCACAAGTCTCACCAGTCTGCCTGGCTTCCACAAACGAGGCACTGCCTTCGGGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS TCA 90 bp CATATCATGGCATCGGTAATGCGTGCACCCCAGTACTGCCGACACTaGTTCACAGTGACCAGGGGTAGAACAACTTGCTGCAGGCGAGCT +
Preference number: 5 (lower is better)
Translates to: HIMASVMRAPQYCRH*FTVTRGRTTCCRRA
Trigger: AGCTCGCCTGCAGCAAGTTGTTCTACCCCTGGTCACTGTGAATCAGTGTCGGCAGTACTGGGGTGCACGCATTACCGATGCCATGATATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS GCA 90 bp ATTGTTCATGGTGTTGGCGTTCCAGTTAGGGTGTGTGATGGCCCTTaGGATCGAGAGGACCTGCACAGGTTCAGCATTGGAAGATCGGTC +
Preference number: 5 (lower is better)
Translates to: IVHGVGVPVRVCDGP*DREDLHRFSIGRSV
Trigger: GACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGGGCCATCACACACCCTAACTGGAACGCCAACACCATGAACAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS GCA 90 bp GTTGATCCAGGTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTaGTTGTATGTTGCAGTTCTTAGTGCCCCAGGAGACAATCCCAAT +
Preference number: 5 (lower is better)
Translates to: VDPGTELADPSVHGR*LYVAVLSAPGDNPN
Trigger: ATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTACCTGGATCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS TCA 72 bp AGGCAGTGCCTCGTTTGTGGAAGCCAGGCAGACTGGTaGGACTTGTGCTGTGTACCGGGCTGGCGAGGCAAG +
Preference number: 6 (lower is better)
Translates to: RQCLVCGSQADW*DLCCVPGWRGK
Trigger: CTTGCCTCGCCAGCCCGGTACACAGCACAAGTCTCACCAGTCTGCCTGGCTTCCACAAACGAGGCACTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 72 bp GGTAGAACAACTTGCTGCAGGCGAGCTGGTGTCACATaGCCCACACCACTGATTCGGCCCCAGCCAGTGGTG +
Preference number: 6 (lower is better)
Translates to: GRTTCCRRAGVT*PTPLIRPQPVV
Trigger: CACCACTGGCTGGGGCCGAATCAGTGGTGTGGGCAATGTGACACCAGCTCGCCTGCAGCAAGTTGTTCTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 90 bp GCTGTGTACCGGGCTGGCGAGGCAAGCTTCAGGAGAGTCAGGTCATaGTTCATGGTGTTGGCGTTCCAGTTAGGGTGTGTGATGGCCCTT +
Preference number: 6 (lower is better)
Translates to: AVYRAGEASFRRVRS*FMVLAFQLGCVMAL
Trigger: AAGGGCCATCACACACCCTAACTGGAACGCCAACACCATGAACAATGACCTGACTCTCCTGAAGCTTGCCTCGCCAGCCCGGTACACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS TCA 72 bp GCATCGGTAATGCGTGCACCCCAGTACTGCCGACACTaGTTCACAGTGACCAGGGGTAGAACAACTTGCTGC +
Preference number: 6 (lower is better)
Translates to: ASVMRAPQYCRH*FTVTRGRTTCC
Trigger: GCAGCAAGTTGTTCTACCCCTGGTCACTGTGAATCAGTGTCGGCAGTACTGGGGTGCACGCATTACCGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CCA 72 bp TTGGAAGATCGGTCATATTCTCCCAAAACGACAAAGTaGCGTCCAGGCGTGACTTGGCAGTGGGCAGCCGTG +
Preference number: 6 (lower is better)
Translates to: LEDRSYSPKTTK*RPGVTWQWAAV
Trigger: CACGGCTGCCCACTGCCAAGTCACGCCTGGACGCCACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS GCA 72 bp ATTCTCCCCGTTGACAATTCTCTGATTGTAGCTCAGTaGAGGCGTGATGGCAGGAACACCACAGCCCCAGGA +
Preference number: 6 (lower is better)
Translates to: ILPVDNSLIVAQ*RRDGRNTTAPG
Trigger: TCCTGGGGCTGTGGTGTTCCTGCCATCACGCCTGCACTGAGCTACAATCAGAGAATTGTCAACGGGGAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS GCA 72 bp GGTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTaGTTGTATGTTGCAGTTCTTAGTGCCCCAGGAGAC +
Preference number: 6 (lower is better)
Translates to: GTELADPSVHGR*LYVAVLSAPGD
Trigger: GTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 90 bp TGTGTGATGGCCCTTGCGATCGAGAGGACCTGCACAGGTTCAGCATaGGAAGATCGGTCATATTCTCCCAAAACGACAAAGTGGCGTCCA +
Preference number: 6 (lower is better)
Translates to: CVMALAIERTCTGSA*EDRSYSPKTTKWRP
Trigger: TGGACGCCACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGGGCCATCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 90 bp GTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTGCTTGTATGTaGCAGTTCTTAGTGCCCCAGGAGACAATCCCAATAAGCACCCAG +
Preference number: 6 (lower is better)
Translates to: VLNLLTRVYMAGACM*QFLVPQETIPISTQ
Trigger: CTGGGTGCTTATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 90 bp GATCCAGGTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTGCTaGTATGTTGCAGTTCTTAGTGCCCCAGGAGACAATCCCAATAAG +
Preference number: 6 (lower is better)
Translates to: DPGTELADPSVHGRC*YVAVLSAPGDNPNK
Trigger: CTTATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTACCTGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 72 bp TTGCTGACCCGAGTGTACATGGCCGGTGCTTGTATGTaGCAGTTCTTAGTGCCCCAGGAGACAATCCCAATA +
Preference number: 6 (lower is better)
Translates to: LLTRVYMAGACM*QFLVPQETIPI
Trigger: TATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CAA 72 bp ACTGAACTTGCTGACCCGAGTGTACATGGCCGGTGCTaGTATGTTGCAGTTCTTAGTGCCCCAGGAGACAAT +
Preference number: 6 (lower is better)
Translates to: TELADPSVHGRC*YVAVLSAPGDN
Trigger: ATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8
CDS CCA 72 bp CCCTTGCGATCGAGAGGACCTGCACAGGTTCAGCATTaGAAGATCGGTCATATTCTCCCAAAACGACAAAGT +
Preference number: 6 (lower is better)
Translates to: PLRSRGPAQVQH*KIGHILPKRQS
Trigger: ACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034368.8