Pregenerated sensors for CTRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031896Ensembl transcript IDs: ENSMUST00000034368.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | GAGCCCCGAAGGCAGTGCCTCGTTTGTGGAAGCCAGGCAGACTGGTaGGACTTGTGCTGTGTACCGGGCTGGCGAGGCAAGCTTCAGGAG | + |
Preference number: 5 (lower is better) Translates to: EPRRQCLVCGSQADW*DLCCVPGWRGKLQE Trigger: CTCCTGAAGCTTGCCTCGCCAGCCCGGTACACAGCACAAGTCTCACCAGTCTGCCTGGCTTCCACAAACGAGGCACTGCCTTCGGGGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS TCA 90 bp | CATATCATGGCATCGGTAATGCGTGCACCCCAGTACTGCCGACACTaGTTCACAGTGACCAGGGGTAGAACAACTTGCTGCAGGCGAGCT | + |
Preference number: 5 (lower is better) Translates to: HIMASVMRAPQYCRH*FTVTRGRTTCCRRA Trigger: AGCTCGCCTGCAGCAAGTTGTTCTACCCCTGGTCACTGTGAATCAGTGTCGGCAGTACTGGGGTGCACGCATTACCGATGCCATGATATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS GCA 90 bp | ATTGTTCATGGTGTTGGCGTTCCAGTTAGGGTGTGTGATGGCCCTTaGGATCGAGAGGACCTGCACAGGTTCAGCATTGGAAGATCGGTC | + |
Preference number: 5 (lower is better) Translates to: IVHGVGVPVRVCDGP*DREDLHRFSIGRSV Trigger: GACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGGGCCATCACACACCCTAACTGGAACGCCAACACCATGAACAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS GCA 90 bp | GTTGATCCAGGTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTaGTTGTATGTTGCAGTTCTTAGTGCCCCAGGAGACAATCCCAAT | + |
Preference number: 5 (lower is better) Translates to: VDPGTELADPSVHGR*LYVAVLSAPGDNPN Trigger: ATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTACCTGGATCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS TCA 72 bp | AGGCAGTGCCTCGTTTGTGGAAGCCAGGCAGACTGGTaGGACTTGTGCTGTGTACCGGGCTGGCGAGGCAAG | + |
Preference number: 6 (lower is better) Translates to: RQCLVCGSQADW*DLCCVPGWRGK Trigger: CTTGCCTCGCCAGCCCGGTACACAGCACAAGTCTCACCAGTCTGCCTGGCTTCCACAAACGAGGCACTGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 72 bp | GGTAGAACAACTTGCTGCAGGCGAGCTGGTGTCACATaGCCCACACCACTGATTCGGCCCCAGCCAGTGGTG | + |
Preference number: 6 (lower is better) Translates to: GRTTCCRRAGVT*PTPLIRPQPVV Trigger: CACCACTGGCTGGGGCCGAATCAGTGGTGTGGGCAATGTGACACCAGCTCGCCTGCAGCAAGTTGTTCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 90 bp | GCTGTGTACCGGGCTGGCGAGGCAAGCTTCAGGAGAGTCAGGTCATaGTTCATGGTGTTGGCGTTCCAGTTAGGGTGTGTGATGGCCCTT | + |
Preference number: 6 (lower is better) Translates to: AVYRAGEASFRRVRS*FMVLAFQLGCVMAL Trigger: AAGGGCCATCACACACCCTAACTGGAACGCCAACACCATGAACAATGACCTGACTCTCCTGAAGCTTGCCTCGCCAGCCCGGTACACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS TCA 72 bp | GCATCGGTAATGCGTGCACCCCAGTACTGCCGACACTaGTTCACAGTGACCAGGGGTAGAACAACTTGCTGC | + |
Preference number: 6 (lower is better) Translates to: ASVMRAPQYCRH*FTVTRGRTTCC Trigger: GCAGCAAGTTGTTCTACCCCTGGTCACTGTGAATCAGTGTCGGCAGTACTGGGGTGCACGCATTACCGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CCA 72 bp | TTGGAAGATCGGTCATATTCTCCCAAAACGACAAAGTaGCGTCCAGGCGTGACTTGGCAGTGGGCAGCCGTG | + |
Preference number: 6 (lower is better) Translates to: LEDRSYSPKTTK*RPGVTWQWAAV Trigger: CACGGCTGCCCACTGCCAAGTCACGCCTGGACGCCACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS GCA 72 bp | ATTCTCCCCGTTGACAATTCTCTGATTGTAGCTCAGTaGAGGCGTGATGGCAGGAACACCACAGCCCCAGGA | + |
Preference number: 6 (lower is better) Translates to: ILPVDNSLIVAQ*RRDGRNTTAPG Trigger: TCCTGGGGCTGTGGTGTTCCTGCCATCACGCCTGCACTGAGCTACAATCAGAGAATTGTCAACGGGGAGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS GCA 72 bp | GGTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTaGTTGTATGTTGCAGTTCTTAGTGCCCCAGGAGAC | + |
Preference number: 6 (lower is better) Translates to: GTELADPSVHGR*LYVAVLSAPGD Trigger: GTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 90 bp | TGTGTGATGGCCCTTGCGATCGAGAGGACCTGCACAGGTTCAGCATaGGAAGATCGGTCATATTCTCCCAAAACGACAAAGTGGCGTCCA | + |
Preference number: 6 (lower is better) Translates to: CVMALAIERTCTGSA*EDRSYSPKTTKWRP Trigger: TGGACGCCACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGGGCCATCACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 90 bp | GTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTGCTTGTATGTaGCAGTTCTTAGTGCCCCAGGAGACAATCCCAATAAGCACCCAG | + |
Preference number: 6 (lower is better) Translates to: VLNLLTRVYMAGACM*QFLVPQETIPISTQ Trigger: CTGGGTGCTTATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 90 bp | GATCCAGGTACTGAACTTGCTGACCCGAGTGTACATGGCCGGTGCTaGTATGTTGCAGTTCTTAGTGCCCCAGGAGACAATCCCAATAAG | + |
Preference number: 6 (lower is better) Translates to: DPGTELADPSVHGRC*YVAVLSAPGDNPNK Trigger: CTTATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGTACCTGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 72 bp | TTGCTGACCCGAGTGTACATGGCCGGTGCTTGTATGTaGCAGTTCTTAGTGCCCCAGGAGACAATCCCAATA | + |
Preference number: 6 (lower is better) Translates to: LLTRVYMAGACM*QFLVPQETIPI Trigger: TATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CAA 72 bp | ACTGAACTTGCTGACCCGAGTGTACATGGCCGGTGCTaGTATGTTGCAGTTCTTAGTGCCCCAGGAGACAAT | + |
Preference number: 6 (lower is better) Translates to: TELADPSVHGRC*YVAVLSAPGDN Trigger: ATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCATGTACACTCGGGTCAGCAAGTTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |
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CDS CCA 72 bp | CCCTTGCGATCGAGAGGACCTGCACAGGTTCAGCATTaGAAGATCGGTCATATTCTCCCAAAACGACAAAGT | + |
Preference number: 6 (lower is better) Translates to: PLRSRGPAQVQH*KIGHILPKRQS Trigger: ACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034368.8 |