Pregenerated sensors for CTRC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062478Ensembl transcript IDs: ENSMUST00000037059.12
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCAACCTGGAGCACGTGGTGTGGTTCACTATGGGCTGCAGACCCTaGTGGAGCACTTCAGCAATGGGACCGTTGGTCCAGAGGCGACCC | + |
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Preference number: 1 (lower is better) Translates to: SNLEHVVWFTMGCRP*WSTSAMGPLVQRRP Trigger: GGGTCGCCTCTGGACCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CCA 90 bp | AACCTGGAGCACGTGGTGTGGTTCACTATGGGCTGCAGACCCTGCTaGAGCACTTCAGCAATGGGACCGTTGGTCCAGAGGCGACCCCAG | + |
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Preference number: 1 (lower is better) Translates to: NLEHVVWFTMGCRPC*STSAMGPLVQRRPQ Trigger: CTGGGGTCGCCTCTGGACCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR TCA 90 bp | GCACTTCAGCAATGGGACCGTTGGTCCAGAGGCGACCCCAGCCAGTaGCATAGCAGGGATAGTCCCCAGGCAGCAAGGAATCTTGCTCTG | + |
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Preference number: 1 (lower is better) Translates to: ALQQWDRWSRGDPSQ*HSRDSPQAARNLAL Trigger: CAGAGCAAGATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTCACTGGCTGGGGTCGCCTCTGGACCAACGGTCCCATTGCTGAAGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR GCA 90 bp | AACCACCAGTCCAACCTGGAGCACGTGGTGTGGTTCACTATGGGCTaGAGACCCTGCTGGAGCACTTCAGCAATGGGACCGTTGGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: NHQSNLEHVVWFTMG*RPCWSTSAMGPLVQ Trigger: CTGGACCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGACTGGTGGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CCA 90 bp | TCCCGGACCTTGATGAACCACCAGTCCAACCTGGAGCACGTGGTGTaGTTCACTATGGGCTGCAGACCCTGCTGGAGCACTTCAGCAATG | + |
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Preference number: 1 (lower is better) Translates to: SRTLMNHQSNLEHVV*FTMGCRPCWSTSAM Trigger: CATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR-3UTR CCA 90 bp | CTGCTGGAGCACTTCAGCAATGGGACCGTTGGTCCAGAGGCGACCCCAGCCAGTTACAGGCCACCTGGATaGTGTCGCTCAGCTCCACAG | + |
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Preference number: 2 (lower is better) Translates to: LLEHFSNGTVGPEATPASYRPPG*CRSAPQ Trigger: CTGTGGAGCTGAGCGACACCATCCAGGTGGCCTGTA...ACTGGCTGGGGTCGCCTCTGGACCAACGGTCCCATTGCTGAAGTGCTCCAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CAA 90 bp | GAGATGACACCGTCACCACCAGCGCACACCATCGTCTCCCGGACCTaGATGAACCACCAGTCCAACCTGGAGCACGTGGTGTGGTTCACT | + |
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Preference number: 2 (lower is better) Translates to: EMTPSPPAHTIVSRT*MNHQSNLEHVVWFT Trigger: AGTGAACCACACCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR-3UTR GCA 90 bp | GCGCACACCATCGTCTCCCGGACCTTGATGAACCACCAGTCCAACCTGGAGCACATGGGCTGCAGACCCTaGTGGAGCACTTCAGCAATG | + |
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Preference number: 2 (lower is better) Translates to: AHTIVSRTLMNHQSNLEHMGCRP*WSTSAM Trigger: CATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCAT...GTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGATGACACCGTCACCACCAGCGCACACCATCGTCTCCCGGACCTTGATGTGGTGTGGTTCACTATaGGCTGCAGACCCTGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: AEMTPSPPAHTIVSRTLMWCGSL*AADPAG Trigger: TCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCA...CATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTCTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR-3UTR CCA 90 bp | AGCCGTCTTCCACTGGGCAGTTCAGTGGGCCACCAGAGTCTCCGTTACAGGCAGCTGGAGCACGTGGTGTaGTTCACTATGGGCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: SRLPLGSSVGHQSLRYRQLEHVV*FTMGCR Trigger: TCTGCAGCCCATAGTGAACCACACCACGTGCTCCAG...CTGCCTGTAACGGAGACTCTGGTGGCCCACTGAACTGCCCAGTGGAAGACGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR-3UTR CCA 90 bp | GCGCACACCATCGTCTCCCGGACCTTGATGAACCACCAGTCCAACCTGGAGCACCAAGGAATCTTGCTCTaGGATACAGGCCACCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: AHTIVSRTLMNHQSNLEHQGILL*DTGHLD Trigger: ATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTG...GTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR-3UTR GCA 90 bp | ACGGGCTTCTTGTATGTGTTGCAGCCTCTACTGGAACCAAAGCTCACGATGCCATGGTTCACTATGGGCTaGAGACCCTGCTGGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: TGFLYVLQPLLEPKLTMPWFTMG*RPCWST Trigger: AGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCA...TGGCATCGTGAGCTTTGGTTCCAGTAGAGGCTGCAACACATACAAGAAGCCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CAA 90 bp | TGTTGGGAGATGGGCGTCGAGACTTCTGGAACCGTCTCTTCACAGTaGTATTTTCTCCTTGATCCAGTCAATATAGGCAGACACACGGGT | + |
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Preference number: 2 (lower is better) Translates to: CWEMGVETSGTVSSQ*YFLLDPVNIGRHTG Trigger: ACCCGTGTGTCTGCCTATATTGACTGGATCAAGGAGAAAATACAACTGTGAAGAGACGGTTCCAGAAGTCTCGACGCCCATCTCCCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR TCA 72 bp | TCAGTGGGCCACCAGAGTCTCCGTTACAGGCAGAGATaGCACCGTCACCACCAGCGCACACCATCGTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: SVGHQSLRYRQR*HRHHQRTPSSP Trigger: GGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTCTGCCTGTAACGGAGACTCTGGTGGCCCACTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR TCA 72 bp | CAATGGGACCGTTGGTCCAGAGGCGACCCCAGCCAGTaGCATAGCAGGGATAGTCCCCAGGCAGCAAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: QWDRWSRGDPSQ*HSRDSPQAARN Trigger: ATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTCACTGGCTGGGGTCGCCTCTGGACCAACGGTCCCATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR GCA 72 bp | GAGCACGTGGTGTGGTTCACTATGGGCTGCAGACCCTaGTGGAGCACTTCAGCAATGGGACCGTTGGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: EHVVWFTMGCRP*WSTSAMGPLVQ Trigger: CTGGACCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR GCA 72 bp | TCCAACCTGGAGCACGTGGTGTGGTTCACTATGGGCTaGAGACCCTGCTGGAGCACTTCAGCAATGGGACCG | + |
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Preference number: 3 (lower is better) Translates to: SNLEHVVWFTMG*RPCWSTSAMGP Trigger: CGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CCA 72 bp | GGCAGCAAGGAATCTTGCTCTGGGATACAGGCCACCTaGATGGTGTCGCTCAGCTCCACAGGCTCAGCCAAC | + |
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Preference number: 3 (lower is better) Translates to: GSKESCSGIQAT*MVSLSSTGSAN Trigger: GTTGGCTGAGCCTGTGGAGCTGAGCGACACCATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTGCTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CCA 72 bp | CACGTGGTGTGGTTCACTATGGGCTGCAGACCCTGCTaGAGCACTTCAGCAATGGGACCGTTGGTCCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: HVVWFTMGCRPC*STSAMGPLVQR Trigger: CCTCTGGACCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CAA 72 bp | CCGTCACCACCAGCGCACACCATCGTCTCCCGGACCTaGATGAACCACCAGTCCAACCTGGAGCACGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: PSPPAHTIVSRT*MNHQSNLEHVV Trigger: CACCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR CCA 90 bp | CACAAGCCGTCTTCCACTGGGCAGTTCAGTGGGCCACCAGAGTCTCCGTTACAGCTCTGGCTGACAGGTTaGGTGGGAAGGTGGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: HKPSSTGQFSGPPESPLQLWLTG*VGRWGP Trigger: GGGACCCCACCTTCCCACCCAACCTGTCAGCCAGAG...CTGTAACGGAGACTCTGGTGGCCCACTGAACTGCCCAGTGGAAGACGGCTTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR CCA 90 bp | GCAGAGATGACACCGTCACCACCAGCGCACACCATCGTCTCCCGGACCTTGATGTGCCAAGGCCAGCTTTaGGGACAGCATCCTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AEMTPSPPAHTIVSRTLMCQGQL*GQHPLL Trigger: GAGGAGAGGATGCTGTCCCCAAAGCTGGCCTTGGCA...CATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR TCA 90 bp | TCCACTGGGCAGTTCAGTGGGCCACCAGAGTCTCCGTTACAGGCAGAGATGACATCATCCCTGAGGTACTaGAGAGAGACCTGCCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: STGQFSGPPESPLQAEMTSSLRY*RETCQG Trigger: GCCTTGGCAGGTCTCTCTTCAGTACCTCAGGGATGA...TGTCATCTCTGCCTGTAACGGAGACTCTGGTGGCCCACTGAACTGCCCAGTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR TCA 90 bp | AGCCGTCTTCCACTGGGCAGTTCAGTGGGCCACCAGAGTCTCCGTTACAGGCAGTCCAAGTGTCATCCCTaGGGTACTGAAGAGAGACCT | + |
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Preference number: 4 (lower is better) Translates to: SRLPLGSSVGHQSLRYRQSKCHP*GTEERP Trigger: AGGTCTCTCTTCAGTACCTCAGGGATGACACTTGGA...CTGCCTGTAACGGAGACTCTGGTGGCCCACTGAACTGCCCAGTGGAAGACGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR CCA 90 bp | CTCAGCTCCACAGGCTCAGCCAACTTGATGATGGCGATGTCGTTCCACAGCAGACTCCTCCTACCACTCTaGCTGACAGGTTGGGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LSSTGSANLMMAMSFHSRLLLPL*LTGWVG Trigger: TCCCACCCAACCTGTCAGCCAGAGTGGTAGGAGGAG...TCTGCTGTGGAACGACATCGCCATCATCAAGTTGGCTGAGCCTGTGGAGCTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CAA 72 bp | GACATAGCAGGGATAGTCCCCAGGCAGCAAGGAATCTaGCTCTGGGATACAGGCCACCTGGATGGTGTCGCT | + |
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Preference number: 4 (lower is better) Translates to: DIAGIVPRQQGI*LWDTGHLDGVA Trigger: AGCGACACCATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR GCA 90 bp | GATCCAGTCAATATAGGCAGACACACGGGTGAAGACCACGGGCTTCTTGTATGTCTGCCCCCACAGGTGTaGCTCCAAGTGTCATCCCTG | + |
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Preference number: 4 (lower is better) Translates to: DPVNIGRHTGEDHGLLVCLPPQV*LQVSSL Trigger: CAGGGATGACACTTGGAGGCACACCTGTGGGGGCAG...ACATACAAGAAGCCCGTGGTCTTCACCCGTGTGTCTGCCTATATTGACTGGATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| 3UTR CAA 72 bp | GACACACGGGTGAAGACCACGGGCTTCTTGTATGTGTaGCAGCCTCTACTGGAACCAAAGCTCACGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: DTRVKTTGFLYV*QPLLEPKLTMP Trigger: TGGCATCGTGAGCTTTGGTTCCAGTAGAGGCTGCAACACATACAAGAAGCCCGTGGTCTTCACCCGTGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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| CDS-3UTR CCA 90 bp | CACGGGCTTCTTGTATGTGTTGCAGCCTCTACTGGAACCAAAGCTCACGATGCCTTTGTGTTGATGCAGTaGGCAGCAGTGAGGACGTGG | + |
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Preference number: 4 (lower is better) Translates to: HGLLVCVAASTGTKAHDAFVLMQ*AAVRTW Trigger: CCACGTCCTCACTGCTGCCCACTGCATCAACACAAA...GGCATCGTGAGCTTTGGTTCCAGTAGAGGCTGCAACACATACAAGAAGCCCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037059.12 |
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