Pregenerated sensors for CTNNBIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028988Ensembl transcript IDs: ENSMUST00000030839.13, ENSMUST00000105692.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAACAGGGAGGTGCCCCAGGGCTTGAACTCAAGACCTGCTGGCACTaGCATCCTGCACACTCCCTGCCACACGGGAGGCCGAAGCCCCAA | + |
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Preference number: 1 (lower is better) Translates to: QQGGAPGLELKTCWH*HPAHSLPHGRPKPQ Trigger: TTGGGGCTTCGGCCTCCCGTGTGGCAGGGAGTGTGCAGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 90 bp | GCTCTCCTCTCAGGCTCTTGCTGGTCAGGCTGGGGTTGGCGGAGCTaGTTCTCCACTGTCCTTGCTCCCTGGAGCTCAATGGCCAAAGCG | + |
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Preference number: 1 (lower is better) Translates to: ALLSGSCWSGWGWRS*FSTVLAPWSSMAKA Trigger: CGCTTTGGCCATTGAGCTCCAGGGAGCAAGGACAGTGGAGAATCAGCTCCGCCAACCCCAGCCTGACCAGCAAGAGCCTGAGAGGAGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 90 bp | CAGCTCTTAGAACTGAGTACATCAATCCTGCCTCCCGGTCACCCCTaGGCTCTGGGCTGCTGGCTCAGGAGAACACAAAGCCCCTTGGGG | + |
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Preference number: 1 (lower is better) Translates to: QLLELSTSILPPGHP*ALGCWLRRTQSPLG Trigger: CCCCAAGGGGCTTTGTGTTCTCCTGAGCCAGCAGCCCAGAGCTCAGGGGTGACCGGGAGGCAGGATTGATGTACTCAGTTCTAAGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 90 bp | GGGTCGGATGGGGTAAGGGGTGCAAAGGGTAAGAAGACGGTGGTTTaGTACCACTCAACCGGCAGAGGAGCCACACAGATCTCTTGGCCA | + |
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Preference number: 1 (lower is better) Translates to: GSDGVRGAKGKKTVV*YHSTGRGATQISWP Trigger: TGGCCAAGAGATCTGTGTGGCTCCTCTGCCGGTTGAGTGGTAGCAAACCACCGTCTTCTTACCCTTTGCACCCCTTACCCCATCCGACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
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| 3UTR GCA 90 bp | AGAACAAGCACGCGTCTGTCAGTCAGTGTGAGCTCATACCGTGCCTaGTCACACACGCTGCTCCTCCCCAGCAATGACGCTCTCCTCTCA | + |
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Preference number: 1 (lower is better) Translates to: RTSTRLSVSVSSYRA*SHTLLLPSNDALLS Trigger: TGAGAGGAGAGCGTCATTGCTGGGGAGGAGCAGCGTGTGTGAGCAGGCACGGTATGAGCTCACACTGACTGACAGACGCGTGCTTGTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 90 bp | CTGGGCTCAGGTAGAACACATCTGCTATCCGGGAACTACAGCCACTaGCAATGGACCCTGGGAAGCCTGGCTAGGTTGTGCTTGGAGCCA | + |
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Preference number: 1 (lower is better) Translates to: LGSGRTHLLSGNYSH*QWTLGSLARLCLEP Trigger: TGGCTCCAAGCACAACCTAGCCAGGCTTCCCAGGGTCCATTGCCAGTGGCTGTAGTTCCCGGATAGCAGATGTGTTCTACCTGAGCCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 90 bp | GTTGGCGGAGCTGATTCTCCACTGTCCTTGCTCCCTGGAGCTCAATaGCCAAAGCGAGCATGTTACTGTCAGCTAACAGGGCCGATGTGC | + |
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Preference number: 1 (lower is better) Translates to: VGGADSPLSLLPGAQ*PKRACYCQLTGPMC Trigger: GCACATCGGCCCTGTTAGCTGACAGTAACATGCTCGCTTTGGCCATTGAGCTCCAGGGAGCAAGGACAGTGGAGAATCAGCTCCGCCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 90 bp | ACTCCTGTACTTAGCATGGGCTGGCCAGAAAGGCCTGAAGAGCTCTaGACAATCCATTCGCTCCAGGAAACTGGCTGGCTGCCAGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: TPVLSMGWPERPEEL*TIHSLQETGWLPAL Trigger: AAGAGCTGGCAGCCAGCCAGTTTCCTGGAGCGAATGGATTGTGCAGAGCTCTTCAGGCCTTTCTGGCCAGCCCATGCTAAGTACAGGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 90 bp | AGGCCTGAAGAGCTCTGCACAATCCATTCGCTCCAGGAAACTGGCTaGCTGCCAGCTCTTAGAACTGAGTACATCAATCCTGCCTCCCGG | + |
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Preference number: 1 (lower is better) Translates to: RPEELCTIHSLQETG*LPALRTEYINPASR Trigger: CCGGGAGGCAGGATTGATGTACTCAGTTCTAAGAGCTGGCAGCCAGCCAGTTTCCTGGAGCGAATGGATTGTGCAGAGCTCTTCAGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 90 bp | TGGCCAAAGCGAGCATGTTACTGTCAGCTAACAGGGCCGATGTGCTaGGGGACCAGATGTTCACATTCTCCTCCTGGGACATGTCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: WPKRACYCQLTGPMC*GTRCSHSPPGTCLG Trigger: TCCCAGACATGTCCCAGGAGGAGAATGTGAACATCTGGTCCCTCAGCACATCGGCCCTGTTAGCTGACAGTAACATGCTCGCTTTGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 90 bp | CGGGAGTCAGGGGTGAGCCAATGGGAAACCAAACCCGCATCTTACTaGCAATCAAATCCAAACACAAACCCACTACGTGAAGGCAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: RESGVSQWETKPASY*QSNPNTNPLREGSS Trigger: GCTGCTGCCTTCACGTAGTGGGTTTGTGTTTGGATTTGATTGGCAGTAAGATGCGGGTTTGGTTTCCCATTGGCTCACCCCTGACTCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 90 bp | CTGTGGGGCCTACTGTGTGAAAGTCTAGCTGGTCTTCCAAGTGGGTaGTTCCTAATAAATAAGCCATGCTACTCCCCCTTCTATGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: LWGLLCESLAGLPSG*FLINKPCYSPFYAD Trigger: GTCAGCATAGAAGGGGGAGTAGCATGGCTTATTTATTAGGAAGCACCCACTTGGAAGACCAGCTAGACTTTCACACAGTAGGCCCCACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 90 bp | CCCAAACCCTGTTTTCTGCTTTCAGAACAGAGGAAGTCGGTGATGTaGACAGAACACCTACAGCCAATCAAAGAAAAGACCACGTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: PKPCFLLSEQRKSVM*TEHLQPIKEKTTSH Trigger: GTGGGACGTGGTCTTTTCTTTGATTGGCTGTAGGTGTTCTGTTCACATCACCGACTTCCTCTGTTCTGAAAGCAGAAAACAGGGTTTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 90 bp | ACCCGCATCTTACTGCCAATCAAATCCAAACACAAACCCACTACGTaGAGGCAGCAGCCAGCTCTTTGTGTAATAAATATTGCAAAGCTC | + |
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Preference number: 1 (lower is better) Translates to: TRILLPIKSKHKPTT*RQQPALCVINIAKL Trigger: GAGCTTTGCAATATTTATTACACAAAGAGCTGGCTGCTGCCTTCACGTAGTGGGTTTGTGTTTGGATTTGATTGGCAGTAAGATGCGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 90 bp | AATATCCCAAACCCTGTTTTCTGCTTTCAGAACAGAGGAAGTCGGTaGTGTGAACAGAACACCTACAGCCAATCAAAGAAAAGACCACGT | + |
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Preference number: 1 (lower is better) Translates to: NIPNPVFCFQNRGSR*CEQNTYSQSKKRPR Trigger: ACGTGGTCTTTTCTTTGATTGGCTGTAGGTGTTCTGTTCACATCACCGACTTCCTCTGTTCTGAAAGCAGAAAACAGGGTTTGGGATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR TCA 90 bp | TCCTCTCAGGCTCTTGCTGGTCAGGCTGGGGTTGGCGGAGCTGATTCTCCACTGCCTCCCGGTCACCCCTaGGCTCTGGGCTGCTGGCTC | + |
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Preference number: 2 (lower is better) Translates to: SSQALAGQAGVGGADSPLPPGHP*ALGCWL Trigger: GAGCCAGCAGCCCAGAGCTCAGGGGTGACCGGGAGG...CAGTGGAGAATCAGCTCCGCCAACCCCAGCCTGACCAGCAAGAGCCTGAGAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CCA 90 bp | CCTTGGGGGCCTGTTCTCCAGCTGTGGACCCCGCTCGCGCTCGCGTCCCTGGGGTGGTGGAGGCAGGTGTaGTCATTAAAGCACGTGCAT | + |
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Preference number: 2 (lower is better) Translates to: PWGPVLQLWTPLALASLGWWRQV*SLKHVH Trigger: ATGCACGTGCTTTAATGACCACACCTGCCTCCACCA...CCCCAGGGACGCGAGCGCGAGCGGGGTCCACAGCTGGAGAACAGGCCCCCAAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR TCA 90 bp | CTGTTCTCCAGCTGTGGACCCCGCTCGCGCTCGCGTCCCTGGGGTCCCTTCGCTAGGAAGTCGGTGATGTaGACAGAACACCTACAGCCA | + |
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Preference number: 2 (lower is better) Translates to: LFSSCGPRSRSRPWGPFARKSVM*TEHLQP Trigger: TGGCTGTAGGTGTTCTGTTCACATCACCGACTTCCT...AGCGAAGGGACCCCAGGGACGCGAGCGCGAGCGGGGTCCACAGCTGGAGAACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR TCA 90 bp | ACCGTCCACCAACAGGGAGGTGCCCCAGGGCTTGAACTCAAGACCTGCTGGCACCTGGCCAGAAAGGCCTaGAGAGCTCTGCACAATCCA | + |
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Preference number: 2 (lower is better) Translates to: TVHQQGGAPGLELKTCWHLARKA*RALHNP Trigger: TGGATTGTGCAGAGCTCTTCAGGCCTTTCTGGCCAG...GTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTGGTGGACGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CCA 90 bp | GTAGAACACATCTGCTATCCGGGAACTACAGCCACTGGCAATGGACCCTGGGAACTGCTGAGTGGCGGCTaGGTGGGGAGGGTCGGATGG | + |
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Preference number: 2 (lower is better) Translates to: VEHICYPGTTATGNGPWELLSGG*VGRVGW Trigger: CCATCCGACCCTCCCCACCCAGCCGCCACTCAGCAG...TTCCCAGGGTCCATTGCCAGTGGCTGTAGTTCCCGGATAGCAGATGTGTTCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR TCA 90 bp | TCCTCTCAGGCTCTTGCTGGTCAGGCTGGGGTTGGCGGAGCTGATTCTCCACTGAACGGGAGTCAGGGGTaGGCCAATGGGAAACCAAAC | + |
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Preference number: 2 (lower is better) Translates to: SSQALAGQAGVGGADSPLNGSQG*ANGKPN Trigger: GTTTGGTTTCCCATTGGCTCACCCCTGACTCCCGTT...CAGTGGAGAATCAGCTCCGCCAACCCCAGCCTGACCAGCAAGAGCCTGAGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGCTCAGGAGAACACAAAGCCCCTTGGGGGCCTGTTCTCCAGCTGTGGACGATCTCTTGGCCATCTaGAGCTTCCAGGGAGTTCCG | + |
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Preference number: 2 (lower is better) Translates to: CWLRRTQSPLGACSPAVDDLLAI*SFQGVP Trigger: CGGAACTCCCTGGAAGCTGCAGATGGCCAAGAGATC...GTCCACAGCTGGAGAACAGGCCCCCAAGGGGCTTTGTGTTCTCCTGAGCCAGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CCA 90 bp | ACCGTCCACCAACAGGGAGGTGCCCCAGGGCTTGAACTCAAGACCTGCTGGCACCTCCAGGAAACTGGCTaGCTGCCAGCTCTTAGAACT | + |
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Preference number: 2 (lower is better) Translates to: TVHQQGGAPGLELKTCWHLQETG*LPALRT Trigger: AGTTCTAAGAGCTGGCAGCCAGCCAGTTTCCTGGAG...GTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTGGTGGACGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CCA 90 bp | TCAGGTAGAACACATCTGCTATCCGGGAACTACAGCCACTGGCAATGGACCCTGCTGGGGTCCCTTCGCTaGTGGAGGCAGGTGTGGTCA | + |
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Preference number: 2 (lower is better) Translates to: SGRTHLLSGNYSHWQWTLLGSLR*WRQVWS Trigger: TGACCACACCTGCCTCCACCAGCGAAGGGACCCCAG...CAGGGTCCATTGCCAGTGGCTGTAGTTCCCGGATAGCAGATGTGTTCTACCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CCA 90 bp | TTGCATCTTTTTCCCTCAGAGGCTGAGCCGAGAACCACTGCTAAGACAGAGCACCCAGGGAAGGCATGGTaGGCATGGGACGACCACCCA | + |
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Preference number: 2 (lower is better) Translates to: LHLFPSEAEPRTTAKTEHPGKAW*AWDDHP Trigger: TGGGTGGTCGTCCCATGCCCACCATGCCTTCCCTGG...GTGCTCTGTCTTAGCAGTGGTTCTCGGCTCAGCCTCTGAGGGAAAAAGATGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR TCA 90 bp | CGATACTTGCATCTTTTTCCCTCAGAGGCTGAGCCGAGAACCACTGCTAAGACAAGGTGCCCCAGGGCTTaGACTCAAGACCTGCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: RYLHLFPSEAEPRTTAKTRCPRA*TQDLLA Trigger: TGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCT...TGTCTTAGCAGTGGTTCTCGGCTCAGCCTCTGAGGGAAAAAGATGCAAGTATCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR GCA 90 bp | GGAAGACTGAATGACCCCATCTCTGCCCACGGGCCCAGCCACATCTCCAGGCCAAAACCCGCATCTTACTaGCAATCAAATCCAAACACA | + |
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Preference number: 2 (lower is better) Translates to: GRLNDPISAHGPSHISRPKPASY*QSNPNT Trigger: TGTGTTTGGATTTGATTGGCAGTAAGATGCGGGTTT...TGGCCTGGAGATGTGGCTGGGCCCGTGGGCAGAGATGGGGTCATTCAGTCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CCA 90 bp | TCCTGCAGCCAATCTCAAGTCCATCCCTTTAAGCCAATCACAAACCACCTTGATGCCACACAGATCTCTTaGCCATCTGCAGCTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: SCSQSQVHPFKPITNHLDATQIS*PSAASR Trigger: CCTGGAAGCTGCAGATGGCCAAGAGATCTGTGTGGC...ATCAAGGTGGTTTGTGATTGGCTTAAAGGGATGGACTTGAGATTGGCTGCAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
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| 3UTR-3UTR CCA 90 bp | AAAATAAAAAGGTTTCTTCCTGCAGCCAATCTCAAGTCCATCCCTTTAAGCCAAGTGGGGAGGGTCGGATaGGGTAAGGGGTGCAAAGGG | + |
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Preference number: 2 (lower is better) Translates to: KIKRFLPAANLKSIPLSQVGRVG*GKGCKG Trigger: CCCTTTGCACCCCTTACCCCATCCGACCCTCCCCAC...TTGGCTTAAAGGGATGGACTTGAGATTGGCTGCAGGAAGAAACCTTTTTATTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCCATTAGATAGACTTTCAGTTAGAATAAGAAGCCACATCGATACTTGCATCGCTCCTCCCCAGCAATaGCGCTCTCCTCTCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: SPLDRLSVRIRSHIDTCIAPPQQ*RSPLRL Trigger: GAGCCTGAGAGGAGAGCGTCATTGCTGGGGAGGAGC...GATGCAAGTATCGATGTGGCTTCTTATTCTAACTGAAAGTCTATCTAATGGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 72 bp | TTCTCCAGCTGTGGACCCCGCTCGCGCTCGCGTCCCTaGGGTCCCTTCGCTGGTGGAGGCAGGTGTGGTCAT | + |
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Preference number: 3 (lower is better) Translates to: FSSCGPRSRSRP*GPFAGGGRCGH Trigger: ATGACCACACCTGCCTCCACCAGCGAAGGGACCCCAGGGACGCGAGCGCGAGCGGGGTCCACAGCTGGAGAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 72 bp | GGTGCCCCAGGGCTTGAACTCAAGACCTGCTGGCACTaGCATCCTGCACACTCCCTGCCACACGGGAGGCCG | + |
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Preference number: 3 (lower is better) Translates to: GAPGLELKTCWH*HPAHSLPHGRP Trigger: CGGCCTCCCGTGTGGCAGGGAGTGTGCAGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 72 bp | CAGGGAGGTGCCCCAGGGCTTGAACTCAAGACCTGCTaGCACTGGCATCCTGCACACTCCCTGCCACACGGG | + |
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Preference number: 3 (lower is better) Translates to: QGGAPGLELKTC*HWHPAHSLPHG Trigger: CCCGTGTGGCAGGGAGTGTGCAGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 72 bp | CCGTGCCTGCTCACACACGCTGCTCCTCCCCAGCAATaGCGCTCTCCTCTCAGGCTCTTGCTGGTCAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: PCLLTHAAPPQQ*RSPLRLLLVRL Trigger: CAGCCTGACCAGCAAGAGCCTGAGAGGAGAGCGTCATTGCTGGGGAGGAGCAGCGTGTGTGAGCAGGCACGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 72 bp | CAACAGGGAGGTGCCCCAGGGCTTGAACTCAAGACCTaGTGGCACTGGCATCCTGCACACTCCCTGCCACAC | + |
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Preference number: 3 (lower is better) Translates to: QQGGAPGLELKT*WHWHPAHSLPH Trigger: GTGTGGCAGGGAGTGTGCAGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 72 bp | GAAGTGAGACACAGGGGGCAGCAGAGAGGCTGGAGCTaGCGGTCAACACTCCTGTACTTAGCATGGGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: EVRHRGQQRGWS*RSTLLYLAWAG Trigger: GCCAGCCCATGCTAAGTACAGGAGTGTTGACCGGCAGCTCCAGCCTCTCTGCTGCCCCCTGTGTCTCACTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CAA 90 bp | CAACAGGGAGGTGCCCCAGGGCTTGAACTCAAGACCTGCTGGCACTGGCATCCTAGAACACAAAGCCCCTaGGGGGCCTGTTCTCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: QQGGAPGLELKTCWHWHPRTQSP*GACSPA Trigger: AGCTGGAGAACAGGCCCCCAAGGGGCTTTGTGTTCT...AGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 72 bp | TTGAACCGTCCACCAACAGGGAGGTGCCCCAGGGCTTaGACTCAAGACCTGCTGGCACTGGCATCCTGCACA | + |
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Preference number: 3 (lower is better) Translates to: LNRPPTGRCPRA*TQDLLALASCT Trigger: TGTGCAGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTGGTGGACGGTTCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 72 bp | ACGCGTCTGTCAGTCAGTGTGAGCTCATACCGTGCCTaGTCACACACGCTGCTCCTCCCCAGCAATGACGCT | + |
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Preference number: 3 (lower is better) Translates to: TRLSVSVSSYRA*SHTLLLPSNDA Trigger: AGCGTCATTGCTGGGGAGGAGCAGCGTGTGTGAGCAGGCACGGTATGAGCTCACACTGACTGACAGACGCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CAA 90 bp | GGAAGACTGAATGACCCCATCTCTGCCCACGGGCCCAGCCACATCTCCAGGCCACAATCACAAACCACCTaGATGCCAGCCCTGCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: GRLNDPISAHGPSHISRPQSQTT*MPALLS Trigger: ACTCAGCAGGGCTGGCATCAAGGTGGTTTGTGATTG...TGGCCTGGAGATGTGGCTGGGCCCGTGGGCAGAGATGGGGTCATTCAGTCTTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CAA 90 bp | TCCAGCTGTGGACCCCGCTCGCGCTCGCGTCCCTGGGGTCCCTTCGCTGGTGGAGCAGCAGCCAGCTCTTaGTGTAATAAATATTGCAAA | + |
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Preference number: 3 (lower is better) Translates to: SSCGPRSRSRPWGPFAGGAAASS*CNKYCK Trigger: TTTGCAATATTTATTACACAAAGAGCTGGCTGCTGC...TCCACCAGCGAAGGGACCCCAGGGACGCGAGCGCGAGCGGGGTCCACAGCTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 72 bp | GTTCACATTCTCCTCCTGGGACATGTCTGGGAAGCTTaGACCGTCCACCAACAGGGAGGTGCCCCAGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: VHILLLGHVWEA*TVHQQGGAPGL Trigger: AAGCCCTGGGGCACCTCCCTGTTGGTGGACGGTTCAAGCTTCCCAGACATGTCCCAGGAGGAGAATGTGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 72 bp | AGGCTGGGGTTGGCGGAGCTGATTCTCCACTGTCCTTaGTCCCTGGAGCTCAATGGCCAAAGCGAGCATGTT | + |
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Preference number: 3 (lower is better) Translates to: RLGLAELILHCP*SLELNGQSEHV Trigger: AACATGCTCGCTTTGGCCATTGAGCTCCAGGGAGCAAGGACAGTGGAGAATCAGCTCCGCCAACCCCAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR-3UTR CAA 90 bp | TTGCATCTTTTTCCCTCAGAGGCTGAGCCGAGAACCACTGCTAAGACAGAGCACGAGGTGCCCCAGGGCTaGAACTCAAGACCTGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: LHLFPSEAEPRTTAKTEHEVPQG*NSRPAG Trigger: GCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTC...GTGCTCTGTCTTAGCAGTGGTTCTCGGCTCAGCCTCTGAGGGAAAAAGATGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR TCA 72 bp | CCGGACTTTAGATACAATCTCACAGGGGAGGAAGACTaGATGACCCCATCTCTGCCCACGGGCCCAGCCACA | + |
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Preference number: 3 (lower is better) Translates to: PDFRYNLTGEED*MTPSLPTGPAT Trigger: TGTGGCTGGGCCCGTGGGCAGAGATGGGGTCATTCAGTCTTCCTCCCCTGTGAGATTGTATCTAAAGTCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR GCA 72 bp | GGGGTAAGGGGTGCAAAGGGTAAGAAGACGGTGGTTTaGTACCACTCAACCGGCAGAGGAGCCACACAGATC | + |
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Preference number: 3 (lower is better) Translates to: GVRGAKGKKTVV*YHSTGRGATQI Trigger: GATCTGTGTGGCTCCTCTGCCGGTTGAGTGGTAGCAAACCACCGTCTTCTTACCCTTTGCACCCCTTACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
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| 3UTR GCA 72 bp | CTTAGCATGGGCTGGCCAGAAAGGCCTGAAGAGCTCTaGACAATCCATTCGCTCCAGGAAACTGGCTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: LSMGWPERPEEL*TIHSLQETGWL Trigger: CAGCCAGCCAGTTTCCTGGAGCGAATGGATTGTGCAGAGCTCTTCAGGCCTTTCTGGCCAGCCCATGCTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
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| 3UTR CCA 72 bp | ACACATCTGCTATCCGGGAACTACAGCCACTGGCAATaGACCCTGGGAAGCCTGGCTAGGTTGTGCTTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: THLLSGNYSHWQ*TLGSLARLCLE Trigger: CTCCAAGCACAACCTAGCCAGGCTTCCCAGGGTCCATTGCCAGTGGCTGTAGTTCCCGGATAGCAGATGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CCA 72 bp | GGTAGAACACATCTGCTATCCGGGAACTACAGCCACTaGCAATGGACCCTGGGAAGCCTGGCTAGGTTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: GRTHLLSGNYSH*QWTLGSLARLC Trigger: GCACAACCTAGCCAGGCTTCCCAGGGTCCATTGCCAGTGGCTGTAGTTCCCGGATAGCAGATGTGTTCTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CCA 72 bp | CCGTTTCTCTCACTCCCAGGGAAGGCATGGTGGGCATaGGACGACCACCCATATCTTTCTTCTCAGTCGCTG | + |
|
Preference number: 3 (lower is better) Translates to: PFLSLPGKAWWA*DDHPYLSSQSL Trigger: CAGCGACTGAGAAGAAAGATATGGGTGGTCGTCCCATGCCCACCATGCCTTCCCTGGGAGTGAGAGAAACGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CCA 72 bp | CTGACACACAGGGTGATACACGGTGTAATGGGGGCCTaGGCTCAGGTAGAACACATCTGCTATCCGGGAACT | + |
|
Preference number: 3 (lower is better) Translates to: LTHRVIHGVMGA*AQVEHICYPGT Trigger: AGTTCCCGGATAGCAGATGTGTTCTACCTGAGCCCAGGCCCCCATTACACCGTGTATCACCCTGTGTGTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | GAGTGGAAGAAAGACCATAGCAACGGGAGTCAGGGGTaGGCCAATGGGAAACCAAACCCGCATCTTACTGCC | + |
|
Preference number: 3 (lower is better) Translates to: EWKKDHSNGSQG*ANGKPNPHLTA Trigger: GGCAGTAAGATGCGGGTTTGGTTTCCCATTGGCTCACCCCTGACTCCCGTTGCTATGGTCTTTCTTCCACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | CGAGCATGTTACTGTCAGCTAACAGGGCCGATGTGCTaGGGGACCAGATGTTCACATTCTCCTCCTGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: RACYCQLTGPMC*GTRCSHSPPGT Trigger: TGTCCCAGGAGGAGAATGTGAACATCTGGTCCCTCAGCACATCGGCCCTGTTAGCTGACAGTAACATGCTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | ACTTTAGATACAATCTCACAGGGGAGGAAGACTGAATaGCCCCATCTCTGCCCACGGGCCCAGCCACATCTC | + |
|
Preference number: 3 (lower is better) Translates to: TLDTISQGRKTE*PHLCPRAQPHL Trigger: GAGATGTGGCTGGGCCCGTGGGCAGAGATGGGGTCATTCAGTCTTCCTCCCCTGTGAGATTGTATCTAAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | CCAGGGCTTGGCCTCGAGGCAGTCACAGGAACCAACTaGAGCTGGCAACACCGGACTTTAGATACAATCTCA | + |
|
Preference number: 3 (lower is better) Translates to: PGLGLEAVTGTN*SWQHRTLDTIS Trigger: TGAGATTGTATCTAAAGTCCGGTGTTGCCAGCTTCAGTTGGTTCCTGTGACTGCCTCGAGGCCAAGCCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CCA 72 bp | GATGTGCTGAGGGACCAGATGTTCACATTCTCCTCCTaGGACATGTCTGGGAAGCTTGAACCGTCCACCAAC | + |
|
Preference number: 3 (lower is better) Translates to: DVLRDQMFTFSS*DMSGKLEPSTN Trigger: GTTGGTGGACGGTTCAAGCTTCCCAGACATGTCCCAGGAGGAGAATGTGAACATCTGGTCCCTCAGCACATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CCA 72 bp | GCTGATTCTCCACTGTCCTTGCTCCCTGGAGCTCAATaGCCAAAGCGAGCATGTTACTGTCAGCTAACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: ADSPLSLLPGAQ*PKRACYCQLTG Trigger: CCCTGTTAGCTGACAGTAACATGCTCGCTTTGGCCATTGAGCTCCAGGGAGCAAGGACAGTGGAGAATCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | TGGGAAGCCTGGCTAGGTTGTGCTTGGAGCCAAGTTTaGAACCTCTGGGGTTCTAGAAGTGAAACTGGGGTA | + |
|
Preference number: 3 (lower is better) Translates to: WEAWLGCAWSQV*NLWGSRSETGV Trigger: TACCCCAGTTTCACTTCTAGAACCCCAGAGGTTTCAAACTTGGCTCCAAGCACAACCTAGCCAGGCTTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CCA 72 bp | GAGCTCTGCACAATCCATTCGCTCCAGGAAACTGGCTaGCTGCCAGCTCTTAGAACTGAGTACATCAATCCT | + |
|
Preference number: 3 (lower is better) Translates to: ELCTIHSLQETG*LPALRTEYINP Trigger: AGGATTGATGTACTCAGTTCTAAGAGCTGGCAGCCAGCCAGTTTCCTGGAGCGAATGGATTGTGCAGAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR GCA 72 bp | GGGGTGAGCCAATGGGAAACCAAACCCGCATCTTACTaGCAATCAAATCCAAACACAAACCCACTACGTGAA | + |
|
Preference number: 3 (lower is better) Translates to: GVSQWETKPASY*QSNPNTNPLRE Trigger: TTCACGTAGTGGGTTTGTGTTTGGATTTGATTGGCAGTAAGATGCGGGTTTGGTTTCCCATTGGCTCACCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR GCA 72 bp | CTACTGTGTGAAAGTCTAGCTGGTCTTCCAAGTGGGTaGTTCCTAATAAATAAGCCATGCTACTCCCCCTTC | + |
|
Preference number: 3 (lower is better) Translates to: LLCESLAGLPSG*FLINKPCYSPF Trigger: GAAGGGGGAGTAGCATGGCTTATTTATTAGGAAGCACCCACTTGGAAGACCAGCTAGACTTTCACACAGTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR GCA 72 bp | AGACTTTCAGTTAGAATAAGAAGCCACATCGATACTTaGATCTTTTTCCCTCAGAGGCTGAGCCGAGAACCA | + |
|
Preference number: 3 (lower is better) Translates to: RLSVRIRSHIDT*IFFPQRLSREP Trigger: TGGTTCTCGGCTCAGCCTCTGAGGGAAAAAGATGCAAGTATCGATGTGGCTTCTTATTCTAACTGAAAGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | AACCCTGTTTTCTGCTTTCAGAACAGAGGAAGTCGGTaGTGTGAACAGAACACCTACAGCCAATCAAAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: NPVFCFQNRGSR*CEQNTYSQSKK Trigger: TTTCTTTGATTGGCTGTAGGTGTTCTGTTCACATCACCGACTTCCTCTGTTCTGAAAGCAGAAAACAGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR TCA 72 bp | TTACTGCCAATCAAATCCAAACACAAACCCACTACGTaGAGGCAGCAGCCAGCTCTTTGTGTAATAAATATT | + |
|
Preference number: 3 (lower is better) Translates to: LLPIKSKHKPTT*RQQPALCVINI Trigger: AATATTTATTACACAAAGAGCTGGCTGCTGCCTTCACGTAGTGGGTTTGTGTTTGGATTTGATTGGCAGTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR CCA 90 bp | TCCAGCTGTGGACCCCGCTCGCGCTCGCGTCCCTGGGGTCCCTTCGCTGGTGGAACGTCCTCTGCACCCTaGTCGATGGAGTGCTGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SSCGPRSRSRPWGPFAGGTSSAP*SMECCG Trigger: GCCACAGCACTCCATCGACCAGGGTGCAGAGGACGT...TCCACCAGCGAAGGGACCCCAGGGACGCGAGCGCGAGCGGGGTCCACAGCTGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR TCA 90 bp | TCCAGCTGTGGACCCCGCTCGCGCTCGCGTCCCTGGGGTCCCTTCGCTGGTGGAACGCGGACCTTCTGTTaGATGTACATCTCCTCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSCGPRSRSRPWGPFAGGTRTFC*MYISSG Trigger: TCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGT...TCCACCAGCGAAGGGACCCCAGGGACGCGAGCGCGAGCGGGGTCCACAGCTGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CAA 72 bp | CGCTCTCCTCTCAGGCTCTTGCTGGTCAGGCTGGGGTaGGCGGAGCTGATTCTCCACTGTCCTTGCTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: RSPLRLLLVRLG*AELILHCPCSL Trigger: CAGGGAGCAAGGACAGTGGAGAATCAGCTCCGCCAACCCCAGCCTGACCAGCAAGAGCCTGAGAGGAGAGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| 3UTR CAA 72 bp | CTTGAACCGTCCACCAACAGGGAGGTGCCCCAGGGCTaGAACTCAAGACCTGCTGGCACTGGCATCCTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: LEPSTNREVPQG*NSRPAGTGILH Trigger: GTGCAGGATGCCAGTGCCAGCAGGTCTTGAGTTCAAGCCCTGGGGCACCTCCCTGTTGGTGGACGGTTCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR GCA 90 bp | AGACGGTGGTTTGCTACCACTCAACCGGCAGAGGAGCCACACAGATCTCTTGGCCCCTGGTCGATGGAGTaGTGTGGCAGCTGGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: RRWFATTQPAEEPHRSLGPWSME*CGSWLS Trigger: GCTCAGCCAGCTGCCACAGCACTCCATCGACCAGGG...GCCAAGAGATCTGTGTGGCTCCTCTGCCGGTTGAGTGGTAGCAAACCACCGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| 3UTR CAA 72 bp | CTCAAGTCCATCCCTTTAAGCCAATCACAAACCACCTaGATGCCAGCCCTGCTGAGTGGCGGCTGGGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LKSIPLSQSQTT*MPALLSGGWVG Trigger: CCCCACCCAGCCGCCACTCAGCAGGGCTGGCATCAAGGTGGTTTGTGATTGGCTTAAAGGGATGGACTTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| 3UTR CAA 72 bp | TGTTCACATTCTCCTCCTGGGACATGTCTGGGAAGCTaGAACCGTCCACCAACAGGGAGGTGCCCCAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CSHSPPGTCLGS*NRPPTGRCPRA Trigger: AGCCCTGGGGCACCTCCCTGTTGGTGGACGGTTCAAGCTTCCCAGACATGTCCCAGGAGGAGAATGTGAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR TCA 90 bp | AGACGGTGGTTTGCTACCACTCAACCGGCAGAGGAGCCACACAGATCTCTTGGCACTGGCGGTCAGGTTTaGCCCCATCTTCCTCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: RRWFATTQPAEEPHRSLGTGGQV*PHLPQH Trigger: ATGCTGAGGAAGATGGGGTCAAACCTGACCGCCAGT...GCCAAGAGATCTGTGTGGCTCCTCTGCCGGTTGAGTGGTAGCAAACCACCGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| 3UTR CAA 72 bp | AGCCACTGGCAATGGACCCTGGGAAGCCTGGCTAGGTaGTGCTTGGAGCCAAGTTTGAAACCTCTGGGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SHWQWTLGSLAR*CLEPSLKPLGF Trigger: GAACCCCAGAGGTTTCAAACTTGGCTCCAAGCACAACCTAGCCAGGCTTCCCAGGGTCCATTGCCAGTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR CCA 90 bp | TCTCAAGTCCATCCCTTTAAGCCAATCACAAACCACCTTGATGCCAGCCCTGCTCTGCACCCTGGTCGATaGAGTGCTGTGGCAGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SQVHPFKPITNHLDASPALHPGR*SAVAAG Trigger: GCCAGCTGCCACAGCACTCCATCGACCAGGGTGCAG...AGCAGGGCTGGCATCAAGGTGGTTTGTGATTGGCTTAAAGGGATGGACTTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCTCAATGGCCAAAGCGAGCATGTTACTGTCAGCTAACAGGGCCGATGTGCCTTCCGTCTCCGATCTaGAAAACGCCATCACCACGT | + |
|
Preference number: 4 (lower is better) Translates to: GAQWPKRACYCQLTGPMCLPSPI*KTPSPR Trigger: ACGTGGTGATGGCGTTTTCCAGATCGGAGACGGAAG...GCACATCGGCCCTGTTAGCTGACAGTAACATGCTCGCTTTGGCCATTGAGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR GCA 90 bp | ATAAGAAGCCACATCGATACTTGCATCTTTTTCCCTCAGAGGCTGAGCCGAGAACCCTGGTCGATGGAGTaGTGTGGCAGCTGGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IRSHIDTCIFFPQRLSREPWSME*CGSWLS Trigger: GCTCAGCCAGCTGCCACAGCACTCCATCGACCAGGG...TTCTCGGCTCAGCCTCTGAGGGAAAAAGATGCAAGTATCGATGTGGCTTCTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR CCA 90 bp | AAAAGACCACGTCCCACTAGCCAGCCAATCATAACCCTTTTCCAGTTTAAGCAAGGCAGCTGGCTGAGCTaGCTGCTGACGACCCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: KRPRPTSQPIITLFQFKQGSWLS*LLTTPA Trigger: TGCTGGGGTCGTCAGCAGCCAGCTCAGCCAGCTGCC...TTGCTTAAACTGGAAAAGGGTTATGATTGGCTGGCTAGTGGGACGTGGTCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR CCA 90 bp | AAGGTTTCTTCCTGCAGCCAATCTCAAGTCCATCCCTTTAAGCCAATCACAAACGGCAGCTGGCTGAGCTaGCTGCTGACGACCCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: KVSSCSQSQVHPFKPITNGSWLS*LLTTPA Trigger: TGCTGGGGTCGTCAGCAGCCAGCTCAGCCAGCTGCC...GTTTGTGATTGGCTTAAAGGGATGGACTTGAGATTGGCTGCAGGAAGAAACCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS-3UTR CCA 90 bp | TGGGAAACCAAACCCGCATCTTACTGCCAATCAAATCCAAACACAAACCCACTACTGCACCCTGGTCGATaGAGTGCTGTGGCAGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: WETKPASYCQSNPNTNPLLHPGR*SAVAAG Trigger: GCCAGCTGCCACAGCACTCCATCGACCAGGGTGCAG...TAGTGGGTTTGTGTTTGGATTTGATTGGCAGTAAGATGCGGGTTTGGTTTCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS-3UTR TCA 90 bp | GTTTCTTCCTGCAGCCAATCTCAAGTCCATCCCTTTAAGCCAATCACAAACCACACTGGCGGTCAGGTTTaGCCCCATCTTCCTCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: VSSCSQSQVHPFKPITNHTGGQV*PHLPQH Trigger: ATGCTGAGGAAGATGGGGTCAAACCTGACCGCCAGT...GTGGTTTGTGATTGGCTTAAAGGGATGGACTTGAGATTGGCTGCAGGAAGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS-3UTR TCA 90 bp | TCCTGCAGCCAATCTCAAGTCCATCCCTTTAAGCCAATCACAAACCACCTTGATACGCGGACCTTCTGTTaGATGTACATCTCCTCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: SCSQSQVHPFKPITNHLDTRTFC*MYISSG Trigger: TCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGT...ATCAAGGTGGTTTGTGATTGGCTTAAAGGGATGGACTTGAGATTGGCTGCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS-3UTR CCA 90 bp | AAAAAGGTTTCTTCCTGCAGCCAATCTCAAGTCCATCCCTTTAAGCCAATCACACTTCCGTCTCCGATCTaGAAAACGCCATCACCACGT | + |
|
Preference number: 4 (lower is better) Translates to: KKVSSCSQSQVHPFKPITLPSPI*KTPSPR Trigger: ACGTGGTGATGGCGTTTTCCAGATCGGAGACGGAAG...TGTGATTGGCTTAAAGGGATGGACTTGAGATTGGCTGCAGGAAGAAACCTTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| 3UTR CAA 72 bp | ACACAAACCCACTACGTGAAGGCAGCAGCCAGCTCTTaGTGTAATAAATATTGCAAAGCTCACTTCATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TQTHYVKAAASS*CNKYCKAHFIS Trigger: AGAAATGAAGTGAGCTTTGCAATATTTATTACACAAAGAGCTGGCTGCTGCCTTCACGTAGTGGGTTTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030839.13 |
||
| CDS TCA 90 bp | TTTGACCCCATCTTCCTCAGCATGAGCAGCACGCGGACCTTCTGTTaGATGTACATCTCCTCCGGACTCTTCCCGGGTGCTCCCTCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: FDPIFLSMSSTRTFC*MYISSGLFPGAPSR Trigger: CCGCGAGGGAGCACCCGGGAAGAGTCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGTGCTGCTCATGCTGAGGAAGATGGGGTCAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS TCA 90 bp | ATTCCTCCTCACTGGCGGTCAGGTTTGACCCCATCTTCCTCAGCATaGGCAGCACGCGGACCTTCTGTTGAATGTACATCTCCTCCGGAC | + |
|
Preference number: 5 (lower is better) Translates to: IPPHWRSGLTPSSSA*AARGPSVECTSPPD Trigger: GTCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGTGCTGCTCATGCTGAGGAAGATGGGGTCAAACCTGACCGCCAGTGAGGAGGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS-3UTR CAA 90 bp | AGCCAATCTCAAGTCCATCCCTTTAAGCCAATCACAAACCACCTTGATGCCAGCCACGCGGACCTTCTGTaGAATGTACATCTCCTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: SQSQVHPFKPITNHLDASHADLL*NVHLLR Trigger: CCGGAGGAGATGTACATTCAACAGAAGGTCCGCGTG...GCTGGCATCAAGGTGGTTTGTGATTGGCTTAAAGGGATGGACTTGAGATTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS TCA 72 bp | GGTGCGCAGAAATTCCTCCTCACTGGCGGTCAGGTTTaGCCCCATCTTCCTCAGCATGAGCAGCACGCGGAC | + |
|
Preference number: 6 (lower is better) Translates to: GAQKFLLTGGQV*PHLPQHEQHAD Trigger: GTCCGCGTGCTGCTCATGCTGAGGAAGATGGGGTCAAACCTGACCGCCAGTGAGGAGGAATTTCTGCGCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS CAA 72 bp | CATCTTCCTCAGCATGAGCAGCACGCGGACCTTCTGTaGAATGTACATCTCCTCCGGACTCTTCCCGGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: HLPQHEQHADLL*NVHLLRTLPGC Trigger: GCACCCGGGAAGAGTCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGTGCTGCTCATGCTGAGGAAGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS TCA 72 bp | ATCTTCCTCAGCATGAGCAGCACGCGGACCTTCTGTTaGATGTACATCTCCTCCGGACTCTTCCCGGGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: IFLSMSSTRTFC*MYISSGLFPGA Trigger: AGCACCCGGGAAGAGTCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGTGCTGCTCATGCTGAGGAAGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
||
| CDS TCA 72 bp | CACTGGCGGTCAGGTTTGACCCCATCTTCCTCAGCATaGGCAGCACGCGGACCTTCTGTTGAATGTACATCT | + |
|
Preference number: 6 (lower is better) Translates to: HWRSGLTPSSSA*AARGPSVECTS Trigger: AGATGTACATTCAACAGAAGGTCCGCGTGCTGCTCATGCTGAGGAAGATGGGGTCAAACCTGACCGCCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030839.13 ENSMUST00000105692.2 |
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